Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0020166

Physical Location & Seq

Genomic Coordinates Reverse (-)

35733424 .. 35733903

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1269700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATTTTCAGCCAAATACTTCTCTTCGTCTAAACCTACCCAACAACCGACTAAACTTGGAGCTTGTCCTGGAGCCATCATCCACTTCTTCCTCATCATCTTCTTTCAGTCCAACATTAGAACCCCAGCGCATGTTTTCATGCAACTACTGCCAAAGAAAGTTTTACAGCTCTCAAGCACTTGGGGGCCACCAAAATGCTCACAAACTTGAGCGCACATTAGCCAAGAAAAGCAGAGAGCAGCAGTTAAGCTCCGCGGCCCGAGCTCACAGTAGCATGAACCAACGGCCAGGATCTAATTACAGCTGCAGCAGCGATTCAAGTATTAGTCATGCAAGGGATATTCCGCAGGCACATCTTGGTGGGTTGAAAGTACGTCAAGGACATGCCGGTAGGTTTGTCGGTGAGATGAACTGTGGATTCAGACCTGAGAATGTTGAGGAAGATATTTGCCACCTTGACTTGTCTCTGAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

8.95

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57520
malus_domestica	MD00G1113500.v1.1 MD13G1269700.v1.1
prunus_persica	Prupe.1G088000_v2.0.a1
pyrus_communis	pycom13g22270 pycom16g22100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AciI	CCGC	3 cut(s)	255, 257, 347
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	287
AfaI	GTAC	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	321, 370
AjnI	CCWGG	2 cut(s)	69, 289
AluBI	AGCT	5 cut(s)	64, 171, 252, 266, 306
AluI	AGCT	5 cut(s)	64, 171, 252, 266, 306
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	3 cut(s)	187, 258, 287
ApeKI	GCWGC	4 cut(s)	241, 306, 309, 312
AspLEI	GCGC	2 cut(s)	132, 216
AspS9I	GGNCC	2 cut(s)	187, 259
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	4 cut(s)	253, 293, 321, 324
BccI	CCATC	1 cut(s)	85
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	71, 291
BcoDI	GTCTC	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	5 cut(s)	242, 258, 307, 310, 313
BlsI	GCNGC	5 cut(s)	243, 259, 308, 311, 314
Bme1390I	CCNGG	2 cut(s)	71, 291
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	187, 259
BmiI	GGNNCC	2 cut(s)	75, 188
BmrFI	CCNGG	2 cut(s)	71, 291
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	159, 230
BsaJI	CCNNGG	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	71, 291
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	420, 461
BseXI	GCAGC	4 cut(s)	253, 293, 321, 324
BseYI	CCCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	189, 260, 289
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	189, 260, 289
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	3 cut(s)	255, 257, 347
BspANI	GGCC	3 cut(s)	189, 260, 289
BspCNI	CTCAG	2 cut(s)	421, 462
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	2 cut(s)	75, 188
BspMAI	CTGCAG	1 cut(s)	311
BspPI	GGATC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	71, 291
Bst4CI	ACNGT	2 cut(s)	272, 416
Bst6I	CTCTTC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	429, 470
BstDSI	CCRYGG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	132, 216
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 263, 312
BstNI	CCWGG	2 cut(s)	71, 291
BstNSI	RCATGY	2 cut(s)	136, 389
BstSCI	CCNGG	2 cut(s)	69, 289
BstSFI	CTRYAG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	4 cut(s)	253, 293, 321, 324
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	189, 260, 289
BtgI	CCRYGG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	132, 216
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	187, 259
Cfr42I	CCGCGG	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	5 cut(s)	133, 141, 277, 332, 386
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	429, 470
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	69, 289
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	5 cut(s)	136, 144, 280, 335, 389
FaiI	YATR	5 cut(s)	134, 142, 278, 333, 387
FatI	CATG	5 cut(s)	132, 140, 276, 331, 385
Fnu4HI	GCNGC	5 cut(s)	242, 258, 307, 310, 313
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	242, 258, 307, 310, 313
GlaI	GCGC	2 cut(s)	131, 215
GluI	GCNGC	5 cut(s)	242, 258, 307, 310, 313
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	189, 260, 289
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	2 cut(s)	132, 216
Hin1II	CATG	5 cut(s)	136, 144, 280, 335, 389
Hin6I	GCGC	2 cut(s)	130, 214
HinP1I	GCGC	2 cut(s)	130, 214
HinfI	GANTC	2 cut(s)	317, 420
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	425, 471
HpyCH4III	ACNGT	2 cut(s)	272, 416
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	144, 309, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 263, 312
HpyF3I	CTNAG	2 cut(s)	429, 470
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	5 cut(s)	136, 144, 280, 335, 389
HspAI	GCGC	2 cut(s)	130, 214
KspI	CCGCGG	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	61, 73, 257
LpnPI	CCDG	8 cut(s)	56, 83, 140, 276, 303, 335, 403, 441
Lsp1109I	GCAGC	4 cut(s)	253, 293, 321, 324
MaeII	ACGT	1 cut(s)	376
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	4 cut(s)	17, 81, 93, 455
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	103, 433, 465
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	195, 360
MspA1I	CMGCKG	2 cut(s)	257, 306
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	71, 291
MvaI	CCWGG	2 cut(s)	71, 291
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	150, 263, 312
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	5 cut(s)	136, 144, 280, 335, 389
NlaIV	GGNNCC	2 cut(s)	75, 188
NspI	RCATGY	2 cut(s)	136, 389
PfeI	GAWTC	2 cut(s)	317, 420
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	5 cut(s)	243, 259, 308, 311, 314
Psp124BI	GAGCTC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	69, 289
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	2 cut(s)	69, 289
PspN4I	GGNNCC	2 cut(s)	75, 188
PspPI	GGNCC	2 cut(s)	187, 259
PstI	CTGCAG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	2 cut(s)	195, 360
SacI	GAGCTC	1 cut(s)	268
SacII	CCGCGG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	5 cut(s)	242, 258, 307, 310, 313
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	2 cut(s)	187, 259
ScrFI	CCNGG	2 cut(s)	71, 291
SduI	GDGCHC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	307
Sfr303I	CCGCGG	1 cut(s)	258
SgrBI	CCGCGG	1 cut(s)	258
SmiMI	CAYNNNNRTG	2 cut(s)	195, 360
SmlI	CTYRAG	2 cut(s)	174, 209
SmoI	CTYRAG	2 cut(s)	174, 209
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	3 cut(s)	255, 257, 347
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	2 cut(s)	69, 289
TaaI	ACNGT	2 cut(s)	272, 416
TaiI	ACGT	1 cut(s)	379
TasI	AATT	1 cut(s)	298
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	317, 420
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TseI	GCWGC	4 cut(s)	241, 306, 309, 312
TspDTI	ATGAA	3 cut(s)	129, 293, 425
XceI	RCATGY	2 cut(s)	136, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.