Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0020166

Physical Location & Seq

Genomic Coordinates Forward (+)

6561504 .. 6562675

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G088000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTTTCAGCCCAATACTTCTCTTCATCTGAACCTACCCAACGACCAAGTCAATTTAGATCTTGTCCTGGAGCCATCATACACGTCTTCCTCATCATCTTTCAGTCCTTCAGAACAACCGCGCGTGTTTTCTTGCAACTATTGTCAGAGAAAGTTTTATAGCTCACAAGCACTTGGAGGCCACCAAAATGCTCACAAGCTCGAGCGGACTTTAGCCAAGAAAAGCAGAGAGCAGCTAAGCTCCGCTGCCCGAGCTCATGGTGGCTCGAACCAGAGGCCTGCAGGGTCTAATAGCCTCAGCGATTCAAGTCATCCAAGGCAAATTCACGAGGCACATAATCTTGGTGGGTTGAAAGAACATCAAGGACATGCTGGTAGGTTTGCTGGCCATATGAACTGTGGATATAGGCCTGACAATAATGTTGAGGAGGAGACTGGCCACCTTGACTTGTCTTTAAGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.12

Weight (kDa)

7.19

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57520
malus_domestica	MD00G1113500.v1.1 MD13G1269700.v1.1
prunus_persica	Prupe.1G088000_v2.0.a1
pyrus_communis	pycom13g22270 pycom16g22100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	124, 126
AciI	CCGC	3 cut(s)	122, 208, 246
AcoI	YGGCCR	2 cut(s)	388, 439
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	309, 355
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	5 cut(s)	165, 202, 238, 243, 257
AluI	AGCT	5 cut(s)	165, 202, 238, 243, 257
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	428
Ama87I	CYCGRG	2 cut(s)	203, 252
AoxI	GGCC	5 cut(s)	181, 278, 388, 410, 439
ApeKI	GCWGC	2 cut(s)	235, 248
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	126
AvaI	CYCGRG	2 cut(s)	203, 252
BalI	TGGCCA	2 cut(s)	390, 441
BanII	GRGCYC	1 cut(s)	259
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	235, 247
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	236, 249
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	2 cut(s)	237, 250
Bme1390I	CCNGG	1 cut(s)	71
BmeT110I	CYCGRG	2 cut(s)	203, 252
BmgBI	CACGTC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	2 cut(s)	443, 446
BseXI	GCAGC	2 cut(s)	235, 247
Bsh1236I	CGCG	2 cut(s)	124, 126
BshFI	GGCC	5 cut(s)	183, 280, 390, 412, 441
BsiHKAI	GWGCWC	1 cut(s)	259
BsiHKCI	CYCGRG	2 cut(s)	203, 252
BsmAI	GTCTC	1 cut(s)	428
BsnI	GGCC	5 cut(s)	183, 280, 390, 412, 441
BsoBI	CYCGRG	2 cut(s)	203, 252
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	61
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	3 cut(s)	122, 208, 246
BspANI	GGCC	5 cut(s)	183, 280, 390, 412, 441
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	124, 126
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	286
BsrBI	CCGCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	282, 388
BstDEI	CTNAG	2 cut(s)	239, 299
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	2 cut(s)	124, 126
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	2 cut(s)	124, 126
BstV1I	GCAGC	2 cut(s)	235, 247
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	5 cut(s)	183, 280, 390, 412, 441
BtrI	CACGTC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	282, 388
CfoI	GCGC	1 cut(s)	126
CviAII	CATG	2 cut(s)	260, 371
DdeI	CTNAG	2 cut(s)	239, 299
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	388, 439
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	317
Eco147I	AGGCCT	2 cut(s)	280, 412
Eco24I	GRGCYC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	203, 252
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	263, 374
FaiI	YATR	8 cut(s)	82, 162, 261, 339, 372, 393, 395, 408
FatI	CATG	2 cut(s)	259, 370
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	236, 249
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	236, 249
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	236, 249
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	5 cut(s)	183, 280, 390, 412, 441
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	263, 374
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	33, 115, 150
Hpy188III	TCNNGA	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	138, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	239, 299
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	2 cut(s)	263, 374
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	73, 248
LpnPI	CCDG	9 cut(s)	56, 83, 270, 287, 294, 360, 372, 423, 426
Lsp1109I	GCAGC	2 cut(s)	235, 247
MaeII	ACGT	1 cut(s)	86
MalI	GATC	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	17, 81
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	2 cut(s)	390, 441
MluCI	AATT	2 cut(s)	55, 324
MluNI	TGGCCA	2 cut(s)	390, 441
MnlI	CCTC	7 cut(s)	103, 173, 270, 308, 325, 421, 424
Mox20I	TGGCCA	2 cut(s)	390, 441
MscI	TGGCCA	2 cut(s)	390, 441
MseI	TTAA	2 cut(s)	458, 466
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	2 cut(s)	390, 441
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	124, 126
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	263, 374
NlaIV	GGNNCC	1 cut(s)	75
NspI	RCATGY	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	203
PceI	AGGCCT	2 cut(s)	280, 412
PfeI	GAWTC	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	50
PfoI	TCCNGGA	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	237, 250
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	75
PspXI	VCTCGAGB	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	458, 466
SatI	GCNGC	2 cut(s)	236, 249
Sau3AI	GATC	1 cut(s)	61
SbfI	CCTGCAGG	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	71
SdaI	CCTGCAGG	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	9 cut(s)	39, 89, 167, 204, 240, 245, 259, 383, 447
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	203
SlaI	CTCGAG	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse8387I	CCTGCAGG	1 cut(s)	286
Sse9I	AATT	2 cut(s)	55, 324
SseBI	AGGCCT	2 cut(s)	280, 412
SsiI	CCGC	3 cut(s)	122, 208, 246
SstI	GAGCTC	1 cut(s)	259
StuI	AGGCCT	2 cut(s)	280, 412
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	204, 269
TasI	AATT	2 cut(s)	55, 324
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	458, 466
Tru9I	TTAA	2 cut(s)	458, 466
TseI	GCWGC	2 cut(s)	235, 248
TspDTI	ATGAA	2 cut(s)	17, 410
Tth111I	GACNNNGTC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.