Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0020166

Physical Location & Seq

Genomic Coordinates Forward (+)

24055637 .. 24055978

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1113500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTTTTCATGCAACTACTGCCAAAGAAAGTTTTACAGCTCCCAAGCACTTGGAGGCCACCAAAATGCTCACAAACTCGAGCGCACTTTAGCCAAGAAAAGCAGAGAGCGGCTAAGTTCCGCGGCCCGAACTCATGATAGCATGAACCAACGAGCCGTATCTAACTACAGCTGCAGCAGCGATTCAGGTGCTAGTCATGCGGAGTTTCCGCAGGCACATCTTGGCGGGTTGAAAGTACATCAAGGACATGCCGGTAGGTTTGTTGGTCAAATGAACCGTGGATACAGATCTGAGAATGCTGAGGAGGACATTTGCCACCTTGACTTATCTCTGAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060860 GO:0060862 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.62

Weight (kDa)

9.27

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57520
malus_domestica	MD00G1113500.v1.1 MD13G1269700.v1.1
prunus_persica	Prupe.1G088000_v2.0.a1
pyrus_communis	pycom13g22270 pycom16g22100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	122
AciI	CCGC	6 cut(s)	109, 120, 122, 200, 209, 225
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	2 cut(s)	39, 171
AluI	AGCT	2 cut(s)	39, 171
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	55, 123
ApeKI	GCWGC	3 cut(s)	171, 174, 177
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	158, 186, 189
BceAI	ACGGC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciVI	GTATCC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	2 cut(s)	166, 172
BfuI	GTATCC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	5 cut(s)	110, 123, 172, 175, 178
BlsI	GCNGC	5 cut(s)	111, 124, 173, 176, 179
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	286
BsaJI	CCNNGG	2 cut(s)	120, 277
Bse118I	RCCGGY	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	120, 277
BseJI	GATNNNNATC	1 cut(s)	286
BseMII	CTCAG	3 cut(s)	282, 291, 323
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	158, 186, 189
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	57, 125
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	252
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	57, 125
BsoBI	CYCGRG	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	6 cut(s)	109, 120, 122, 200, 209, 225
BspANI	GGCC	2 cut(s)	57, 125
BspCNI	CTCAG	3 cut(s)	283, 292, 324
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	120, 277
BssMI	GATC	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	113, 291, 300, 332
BstDSI	CCRYGG	2 cut(s)	120, 277
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 177, 197
BstNSI	RCATGY	1 cut(s)	251
BstSFI	CTRYAG	2 cut(s)	166, 172
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	158, 186, 189
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	57, 125
BtgI	CCRYGG	2 cut(s)	120, 277
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	124
Cfr42I	CCGCGG	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	5 cut(s)	9, 134, 142, 197, 248
CviJI	RGCY	8 cut(s)	39, 57, 92, 112, 125, 155, 171, 337
CviKI_1	RGCY	8 cut(s)	39, 57, 92, 112, 125, 155, 171, 337
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	4 cut(s)	113, 291, 300, 332
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	77
FaeI	CATG	5 cut(s)	12, 137, 145, 200, 251
FaiI	YATR	5 cut(s)	10, 135, 143, 198, 249
FatI	CATG	5 cut(s)	8, 133, 141, 196, 247
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	5 cut(s)	110, 123, 172, 175, 178
Fsp4HI	GCNGC	5 cut(s)	110, 123, 172, 175, 178
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	5 cut(s)	110, 123, 172, 175, 178
HaeIII	GGCC	2 cut(s)	57, 125
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	12, 137, 145, 200, 251
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	292, 333
Hpy188III	TCNNGA	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	12, 174
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 177, 197
HpyF3I	CTNAG	4 cut(s)	113, 291, 300, 332
Hsp92II	CATG	5 cut(s)	12, 137, 145, 200, 251
HspAI	GCGC	1 cut(s)	82
KspI	CCGCGG	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	3 cut(s)	171, 197, 265
Lsp1109I	GCAGC	3 cut(s)	158, 186, 189
MaeI	CTAG	1 cut(s)	192
MalI	GATC	1 cut(s)	289
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	287
MflI	RGATCY	1 cut(s)	287
MnlI	CCTC	4 cut(s)	47, 295, 298, 327
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	2 cut(s)	122, 171
MspI	CCGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	18, 177, 197
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	12, 137, 145, 200, 251
NspI	RCATGY	1 cut(s)	251
PaeR7I	CTCGAG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	111, 124, 173, 176, 179
PspPI	GGNCC	1 cut(s)	124
PspXI	VCTCGAGB	1 cut(s)	77
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	63
SacII	CCGCGG	1 cut(s)	123
SatI	GCNGC	5 cut(s)	110, 123, 172, 175, 178
Sau3AI	GATC	1 cut(s)	287
Sau96I	GGNCC	1 cut(s)	124
SetI	ASST	5 cut(s)	41, 173, 190, 260, 321
SfcI	CTRYAG	2 cut(s)	166, 172
Sfr274I	CTCGAG	1 cut(s)	77
Sfr303I	CCGCGG	1 cut(s)	123
SgrBI	CCGCGG	1 cut(s)	123
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SsiI	CCGC	6 cut(s)	109, 120, 122, 200, 209, 225
SspMI	CTAG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	2 cut(s)	112, 125
TfiI	GAWTC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	171, 174, 177
TspDTI	ATGAA	2 cut(s)	158, 287
XceI	RCATGY	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	77
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.