AT5G58480

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
23640973 .. 23642853
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58480.1

Sequence Viewer

Length: 1431 bp
ATGGCTCGTCGGCTGTTTCTCCTCCTCCTCGCCGTCACGGCAGGGTTGAGCTTGACGGGAACAACCGTCAGAGCAGTTGGCATAAATTGGGGGACAGAAGCGTCGCACCCTCTTCCGCCTTCAAAGGTTGTAGAGCTTCTGAAATCAAACGGCATTGTCAAAGTGAAGCTCTTCGATGCCGACCCAAAAGTTCTCCGAGCTCTCTCTGGTTCTAATATTGGTGTCACTATCGGAATCCAAAATTCGATGCTCAAGAGCTTGAATGCATCCGTAAAGGTAGCAGAGAGCTGGGTACATGACAATGTCACTCGTTACTTCAACGGTGGAAACAGAGTTCGAATCGAGTATGTAGCAGTTGGAGAAGAGCCATTTCTCCAGAGCTATGGCAATCAGTATAAGCCTTTTGTGATTGGGGCAGCTATGAATATCCAAAATGCTTTAGTTAAGGCGAACTTGGCAAATGAAGTGAAGGTTGTAGTCCCCTCAAGCTTTGATTCCTTTCTTTCTGAATCTGGTCGACCTTCTTCAGGACACTTTAGGGCTGACCTCAACAAGACGATGATTGAACTCCTCTCCTTTCTCACAAAGCACCACTCTCCTTTTTTTGTGACAATCTCTCCTTTCCTAAGCTTTCACCAGAACAAGAACATCTCCCTTGACTTTAGCCTCTTTAAAGAAACAGCAAAGGCTCACAAAGACGGACGTAAAACCTACAGAAACAGCTTTGATCTAAGCTATGACACACTTGTCTCTGCATTGTTCACAATTGGGTTTTCGGAGGTGGATATCGTTGTGTCAAAGATCGGTTGGCCTACAGATGGAGCAGAAAATGCAACATCACTGACTGCTGAGGCGTTCTTTAAAGGACTGATAGTTCACTTGGAGAAAAAGACGGCCTCTCTCCCGCGTCCTCCTGTTGAAACCTACATTGAAAGTCTCTTGGACGAAGATCAGAGAAACTTATCTGCTGGGAACTTTGAGAGGCACTGGGGAGTGTTCACTTTCGACGGTCAAGCCAAATACAATTTCAGTTTCAACCATAAGAATCAGGTAAACGCGCAGAATGTTCAGTACCTTCCTCCTAAGTGGTGTGTGGTGAACAATAACAAGGACTTGTCAAACGCGTCAGCAAGAGCATTAGAAGCGTGTGCTGTTGCGGACTGTACATCGATACTTCCTGGCGGGTCGTGTTCAGGCATCAGATGGCCAGGCAACGTTTCATACGCGTTCAATAGCTTGTACCAGCAAAATGATCACAGTGCAGAAAGCTGCAACTTTGGTGGACTTGGTTTGATCACTACTGTTGATCCTTCTGAGGATAATTGCCGGTTCTCGATTCAACTTGACACTTCTCATTCATCTTCGCAAACTCCAAATTTCTTTCAGAGCTGGCCTCTCCTCTTATTGTTCCTACTGTCCGGACTCTTTTAA

Protein Analysis

476

Amino Acids

52.37

Weight (kDa)

7.67

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 345 9.2e-63 Glycosyl hydrolases family 17
X8 PF07983 362 - 430 3.5e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 100, 746
AccI GTMKAC 1 cut(s) 517
AccII CGCG 4 cut(s) 907, 1058, 1124, 1226
AccIII TCCGGA 1 cut(s) 1418
AciI CCGC 4 cut(s) 116, 905, 1157, 1182
AclI AACGTT 1 cut(s) 1215
AclWI GGATC 1 cut(s) 1301
AcoI YGGCCR 1 cut(s) 1205
AcsI RAATTY 2 cut(s) 241, 1375
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 4 cut(s) 294, 1073, 1165, 1241
AfiI CCNNNNNNNGG 2 cut(s) 527, 818
AflIII ACRYGT 2 cut(s) 1122, 1224
AgsI TTSAA 9 cut(s) 123, 262, 319, 566, 920, 932, 1036, 1231, 1340
AjnI CCWGG 2 cut(s) 1177, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 1010, 1042
AloI GAACNNNNNNTCC 4 cut(s) 318, 350, 858, 890
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 754, 941
AlwI GGATC 1 cut(s) 1301
Aor13HI TCCGGA 1 cut(s) 1418
AoxI GGCC 4 cut(s) 809, 894, 1205, 1391
ApeKI GCWGC 2 cut(s) 416, 1269
ApoI RAATTY 2 cut(s) 241, 1375
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 1060
AsuHPI GGTGA 2 cut(s) 626, 1108
AsuII TTCGAA 1 cut(s) 337
BalI TGGCCA 1 cut(s) 1207
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 202
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 2 cut(s) 428, 1256
BccI CCATC 2 cut(s) 812, 1197
BceAI ACGGC 4 cut(s) 17, 54, 166, 909
BciT130I CCWGG 2 cut(s) 1179, 1209
BclI TGATCA 2 cut(s) 1252, 1293
BcoDI GTCTC 2 cut(s) 754, 941
BfmI CTRYAG 2 cut(s) 712, 813
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 2 cut(s) 417, 1270
BlsI GCNGC 2 cut(s) 418, 1271
Bme1390I CCNGG 2 cut(s) 1179, 1209
BmrFI CCNGG 2 cut(s) 1179, 1209
BmrI ACTGGG 1 cut(s) 997
BmsI GCATC 4 cut(s) 166, 237, 275, 1206
BmuI ACTGGG 1 cut(s) 997
BplI GAGNNNNNCTC 2 cut(s) 1378, 1410
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 2 cut(s) 626, 849
Bpu14I TTCGAA 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 236, 469
Bsa29I ATCGAT 1 cut(s) 1169
BsaWI WCCGGW 1 cut(s) 1418
BsaXI ACNNNNNCTCC 2 cut(s) 601, 631
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 818
Bse118I RCCGGY 1 cut(s) 1326
Bse1I ACTGG 1 cut(s) 992
BseAI TCCGGA 1 cut(s) 1418
BseBI CCWGG 2 cut(s) 1179, 1209
BseCI ATCGAT 1 cut(s) 1169
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 2 cut(s) 527, 818
BseMII CTCAG 2 cut(s) 840, 1305
BseNI ACTGG 1 cut(s) 992
BseRI GAGGAG 5 cut(s) 11, 14, 17, 560, 1388
BseXI GCAGC 2 cut(s) 428, 1256
BseYI CCCAGC 2 cut(s) 288, 968
BsgI GTGCAG 1 cut(s) 1281
Bsh1236I CGCG 4 cut(s) 907, 1058, 1124, 1226
BshFI GGCC 4 cut(s) 811, 896, 1207, 1393
BshVI ATCGAT 1 cut(s) 1169
BsiHKAI GWGCWC 1 cut(s) 202
BsiSI CCGG 2 cut(s) 1327, 1419
BslFI GGGAC 2 cut(s) 106, 464
BslI CCNNNNNNNGG 2 cut(s) 527, 818
BsmAI GTCTC 2 cut(s) 754, 941
BsmFI GGGAC 2 cut(s) 106, 464
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 4 cut(s) 811, 896, 1207, 1393
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 202
Bsp13I TCCGGA 1 cut(s) 1418
Bsp1407I TGTACA 1 cut(s) 1163
Bsp143I GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
BspACI CCGC 4 cut(s) 116, 905, 1157, 1182
BspANI GGCC 4 cut(s) 811, 896, 1207, 1393
BspCNI CTCAG 2 cut(s) 841, 1306
BspDI ATCGAT 1 cut(s) 1169
BspEI TCCGGA 1 cut(s) 1418
BspFNI CGCG 4 cut(s) 907, 1058, 1124, 1226
BspPI GGATC 1 cut(s) 1301
BspQI GCTCTTC 2 cut(s) 176, 357
BspT104I TTCGAA 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 1326
BsrGI TGTACA 1 cut(s) 1163
BsrI ACTGG 1 cut(s) 992
BssAI RCCGGY 1 cut(s) 1326
BssMI GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
Bst2UI CCWGG 2 cut(s) 1179, 1209
Bst4CI ACNGT 7 cut(s) 67, 323, 1010, 1163, 1259, 1303, 1416
Bst6I CTCTTC 3 cut(s) 117, 176, 357
BstAPI GCANNNNNTGC 1 cut(s) 830
BstAUI TGTACA 1 cut(s) 1163
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 1391
BstDEI CTNAG 5 cut(s) 626, 731, 849, 1083, 1314
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 4 cut(s) 907, 1058, 1124, 1226
BstHHI GCGC 1 cut(s) 1060
BstKTI GATC 6 cut(s) 730, 804, 952, 1255, 1296, 1309
BstMAI GTCTC 2 cut(s) 754, 941
BstMBI GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
BstMWI GCNNNNNNNGC 4 cut(s) 38, 455, 830, 1142
BstNI CCWGG 2 cut(s) 1179, 1209
BstSCI CCNGG 2 cut(s) 1177, 1207
BstSFI CTRYAG 2 cut(s) 712, 813
BstUI CGCG 4 cut(s) 907, 1058, 1124, 1226
BstV1I GCAGC 2 cut(s) 428, 1256
BstXI CCANNNNNNTGG 1 cut(s) 383
Bsu15I ATCGAT 1 cut(s) 1169
BsuRI GGCC 4 cut(s) 811, 896, 1207, 1393
BsuTUI ATCGAT 1 cut(s) 1169
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 3 cut(s) 839, 985, 1264
Cac8I GCNNGC 1 cut(s) 1391
CfoI GCGC 1 cut(s) 1060
Cfr10I RCCGGY 1 cut(s) 1326
ClaI ATCGAT 1 cut(s) 1169
CseI GACGC 3 cut(s) 90, 896, 1113
Csp6I GTAC 4 cut(s) 293, 1072, 1164, 1240
CspCI CAANNNNNGTGG 2 cut(s) 1261, 1296
CviAII CATG 1 cut(s) 296
CviQI GTAC 4 cut(s) 293, 1072, 1164, 1240
DdeI CTNAG 5 cut(s) 626, 731, 849, 1083, 1314
DpnI GATC 6 cut(s) 729, 803, 951, 1254, 1295, 1308
DpnII GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
DraI TTTAAA 2 cut(s) 673, 862
DrdI GACNNNNNNGTC 2 cut(s) 100, 746
DseDI GACNNNNNNGTC 2 cut(s) 100, 746
EaeI YGGCCR 1 cut(s) 1205
Eam1104I CTCTTC 3 cut(s) 117, 176, 357
EarI CTCTTC 3 cut(s) 117, 176, 357
EciI GGCGGA 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 787
Eco53kI GAGCTC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 200
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoRII CCWGG 2 cut(s) 1177, 1207
EcoRV GATATC 1 cut(s) 787
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 202
FaeI CATG 1 cut(s) 299
FaiI YATR 9 cut(s) 83, 297, 348, 384, 396, 422, 738, 1041, 1222
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 2 cut(s) 106, 464
FatI CATG 1 cut(s) 295
FauI CCCGC 2 cut(s) 912, 1175
FbaI TGATCA 2 cut(s) 1252, 1293
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 417, 1270
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 202
Fsp4HI GCNGC 2 cut(s) 417, 1270
GlaI GCGC 1 cut(s) 1059
GluI GCNGC 2 cut(s) 417, 1270
GsaI CCCAGC 2 cut(s) 292, 972
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 4 cut(s) 811, 896, 1207, 1393
HapII CCGG 2 cut(s) 1327, 1419
HgaI GACGC 3 cut(s) 90, 896, 1113
HhaI GCGC 1 cut(s) 1060
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 1 cut(s) 1058
HinP1I GCGC 1 cut(s) 1058
HincII GTYRAC 1 cut(s) 518
HindII GTYRAC 1 cut(s) 518
HindIII AAGCTT 2 cut(s) 487, 628
HinfI GANTC 7 cut(s) 234, 339, 494, 509, 1045, 1336, 1422
HpaII CCGG 2 cut(s) 1327, 1419
HphI GGTGA 2 cut(s) 626, 1108
Hpy166II GTNNAC 7 cut(s) 518, 762, 877, 999, 1054, 1099, 1283
Hpy188III TCNNGA 5 cut(s) 253, 376, 528, 1333, 1419
Hpy8I GTNNAC 7 cut(s) 518, 762, 877, 999, 1054, 1099, 1283
Hpy99I CGWCG 3 cut(s) 12, 106, 1010
HpyAV CCTTC 5 cut(s) 129, 463, 531, 1085, 1320
HpyCH4III ACNGT 7 cut(s) 67, 323, 1010, 1163, 1259, 1303, 1416
HpyCH4IV ACGT 2 cut(s) 703, 1215
HpyCH4V TGCA 5 cut(s) 266, 755, 833, 1262, 1272
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 455, 830, 1142
HpyF3I CTNAG 5 cut(s) 626, 731, 849, 1083, 1314
HpySE526I ACGT 2 cut(s) 703, 1215
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 1 cut(s) 1058
Kpn2I TCCGGA 1 cut(s) 1418
Ksp22I TGATCA 2 cut(s) 1252, 1293
Kzo9I GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
LguI GCTCTTC 2 cut(s) 176, 357
LmnI GCTCC 1 cut(s) 821
Lsp1109I GCAGC 2 cut(s) 428, 1256
LweI GCATC 4 cut(s) 166, 237, 275, 1206
MaeII ACGT 2 cut(s) 703, 1215
MaeIII GTNAC 5 cut(s) 34, 223, 304, 311, 607
MalI GATC 6 cut(s) 729, 803, 951, 1254, 1295, 1308
MboI GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
MboII GAAGA 6 cut(s) 104, 163, 374, 516, 959, 1353
MfeI CAATTG 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 202
MlsI TGGCCA 1 cut(s) 1207
MluCI AATT 6 cut(s) 85, 241, 765, 1024, 1321, 1375
MluI ACGCGT 2 cut(s) 1122, 1224
MluNI TGGCCA 1 cut(s) 1207
MlyI GAGTC 1 cut(s) 1416
MmeI TCCRAC 1 cut(s) 337
Mox20I TGGCCA 1 cut(s) 1207
Mph1103I ATGCAT 1 cut(s) 268
MroI TCCGGA 1 cut(s) 1418
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 1207
MseI TTAA 4 cut(s) 444, 672, 861, 1429
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 1207
MspI CCGG 2 cut(s) 1327, 1419
MspR9I CCNGG 2 cut(s) 1179, 1209
MunI CAATTG 1 cut(s) 765
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 2 cut(s) 1179, 1209
MvnI CGCG 4 cut(s) 907, 1058, 1124, 1226
MwoI GCNNNNNNNGC 4 cut(s) 38, 455, 830, 1142
NdeII GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
NlaIII CATG 1 cut(s) 299
NmuCI GTSAC 4 cut(s) 34, 223, 304, 607
NsiI ATGCAT 1 cut(s) 268
NspV TTCGAA 1 cut(s) 337
PciSI GCTCTTC 2 cut(s) 176, 357
PctI GAATGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 6 cut(s) 234, 339, 494, 509, 1045, 1336
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 2 cut(s) 418, 1271
PleI GAGTC 1 cut(s) 1416
PpsI GAGTC 1 cut(s) 1416
Psp124BI GAGCTC 1 cut(s) 202
Psp1406I AACGTT 1 cut(s) 1215
Psp6I CCWGG 2 cut(s) 1177, 1207
PspFI CCCAGC 2 cut(s) 288, 968
PspGI CCWGG 2 cut(s) 1177, 1207
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 4 cut(s) 294, 1073, 1165, 1241
RsaNI GTAC 4 cut(s) 293, 1072, 1164, 1240
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 202
SalI GTCGAC 1 cut(s) 516
SapI GCTCTTC 2 cut(s) 176, 357
SaqAI TTAA 4 cut(s) 444, 672, 861, 1429
SatI GCNGC 2 cut(s) 417, 1270
Sau3AI GATC 6 cut(s) 727, 801, 949, 1252, 1293, 1306
SchI GAGTC 1 cut(s) 1416
ScrFI CCNGG 2 cut(s) 1179, 1209
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 4 cut(s) 166, 237, 275, 1206
SfcI CTRYAG 2 cut(s) 712, 813
SfuI TTCGAA 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 251, 484
SmoI CTYRAG 2 cut(s) 251, 484
Sse9I AATT 6 cut(s) 85, 241, 765, 1024, 1321, 1375
SsiI CCGC 4 cut(s) 116, 905, 1157, 1182
SspI AATATT 1 cut(s) 217
SstI GAGCTC 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 1177, 1207
TaaI ACNGT 7 cut(s) 67, 323, 1010, 1163, 1259, 1303, 1416
TaiI ACGT 2 cut(s) 706, 1218
TaqI TCGA 8 cut(s) 174, 245, 337, 342, 517, 1005, 1169, 1334
TasI AATT 6 cut(s) 85, 241, 765, 1024, 1321, 1375
TatI WGTACW 1 cut(s) 1163
TfiI GAWTC 6 cut(s) 234, 339, 494, 509, 1045, 1336
Tru1I TTAA 4 cut(s) 444, 672, 861, 1429
Tru9I TTAA 4 cut(s) 444, 672, 861, 1429
TscAI CASTG 3 cut(s) 846, 992, 1264
TseFI GTSAC 4 cut(s) 34, 223, 304, 607
TseI GCWGC 2 cut(s) 416, 1269
Tsp45I GTSAC 4 cut(s) 34, 223, 304, 607
TspDTI ATGAA 4 cut(s) 437, 477, 1209, 1347
TspGWI ACGGA 2 cut(s) 259, 714
TspRI CASTG 3 cut(s) 846, 992, 1264
Tth111I GACNNNGTC 1 cut(s) 302
XagI CCTNNNNNAGG 1 cut(s) 525
XapI RAATTY 2 cut(s) 241, 1375
XmiI GTMKAC 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.