pycom03g04850

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
3781563 .. 3784042
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04850.1

Sequence Viewer

Length: 1452 bp
ATGCCTCCAAATCTCCGCACACTCCTCTTCCTCTTGGCGACCACGGCCTCAACCTGCGGAGCCATAGGCGTGAACTGGGGCACGACGGCGTCGCACCCACTACCGCCGACCAAGGTGGTGGAGCTGCTGACGTCCAACAATGTCACCAAGGTCAAGCTGTTCGACGCGGACCCAGGCGTCCTCGAAGCGCTTTCTGGGTCCAAACTTAGCGTCACTGTGGGCATTCCCAATGCGTTGCTTAAAGTTCTCAACTCTTCCAAGAAGGCTGCCGAGAGTTGGGTCCATGACAATGTCACTCGCTACTTCTCCAATAGCGGCGGCGGCGGTGTTAAAATTGAGTATGTTGCTGTTGGAGATGAGCCATTGCTTCAGAGTTATGGTGAGCAATTTCACCCATTCGTCATAGGAGCGGCAATGAATATTCACGCAGCTTTGGCCAGAGCAAAGTTGGAGAGCAATGTGAAAGTGGTCGTGCCTTGTAGTTTTGATTCCTTCCTATCAGAGTCTGGCCATCCTTCAAAAGGACACTTTCGGGCAGACCTCAATAGAACCATGATTGAACTGCTCATGTTTCTCAGCAAGCACAATTCACCATTCTTTGCAACCATTTCCCCCTTCATAAGTCTCCGCCAAAGCAAAAACATTTCCCTCGACTTCACTCTATTTAAAGAGAATGCAAAACCTCATAATGACAGCAGCAGAACATACAAAAACAGCTTCGACTTGATCTATGACACCTTGGTTACAGCTTTGTCAACAGTAGGATTCCCTAAGATGGAAATTGTTGTGTCACAGATTGGTTGGCCTACAGATGGAGCGGCAAACGCAACCTCTTCCACTGCAGAGACCTTCATGAAAGGCCTGATGGGGCACCTTCGTAGCAAATCAGGAACCCCACTCAGGCCTCATAATCCTCCAGTCGAAACATACATTTTTAGCCTCTTAGACGAGGACCAAAGAAGCATAAGCACGGGAAATTTCGAGCGACATTGGGGTGTGTTCACTTTTGATGGTCAAGCCAAGTACCATTTTGATTTCATTCTAGGTTCGAAAAATCTGGTGGACGCTCAAAACGTTGAGTACCTTCCTGCCAAGTGGTGTGTGGTGAACAATAATAGGGACTTATCTAATGCAACTGCTAGTGCTTTAGAGGCATGTTTGCATGCTGATTGCAGTGCAATGTCTCCTGGTGGGTCTTGCTCCAATATCAGTTGGCCGGGTAACATATCATATGCATTTAACAGCTACTATCAGCAGCATAATCAGAGTGCAGACAGCTGTGAATTTGGCGGCTTGGGTTTAATCACAACCGTTGATCCATCTGTGGATAATTGTAAGTTTTCGGTTCAACTACGCACCTCTCTTTCAGGTTCTCTCCATCCGGCCTACCTTCCTCTGTGGATGACCTTGCTAGTACCAACCTTTTTGTTATCCTTACCCAGATTTACGTAG

Protein Analysis

484

Amino Acids

52.62

Weight (kDa)

6.73

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 22 - 346 1.3e-66 Glycosyl hydrolases family 17
X8 PF07983 365 - 433 1.4e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 870
AccBSI CCGCTC 2 cut(s) 410, 818
AccII CGCG 1 cut(s) 167
AclI AACGTT 1 cut(s) 1074
AclWI GGATC 1 cut(s) 1310
AcoI YGGCCR 3 cut(s) 435, 508, 1214
AcsI RAATTY 2 cut(s) 976, 1283
AcuI CTGAAG 1 cut(s) 353
AcyI GRCGYC 3 cut(s) 89, 131, 177
AfaI GTAC 3 cut(s) 1025, 1082, 1416
AfeI AGCGCT 1 cut(s) 189
AfiI CCNNNNNNNGG 5 cut(s) 276, 521, 775, 812, 900
AgsI TTSAA 3 cut(s) 519, 560, 1349
AjnI CCWGG 2 cut(s) 172, 1186
AluBI AGCT 7 cut(s) 124, 157, 431, 717, 749, 1245, 1278
AluI AGCT 7 cut(s) 124, 157, 431, 717, 749, 1245, 1278
Alw26I GTCTC 3 cut(s) 629, 839, 1188
AlwI GGATC 1 cut(s) 1310
AlwNI CAGNNNCTG 1 cut(s) 506
Aor51HI AGCGCT 1 cut(s) 189
AoxI GGCC 8 cut(s) 45, 435, 508, 803, 859, 902, 1214, 1383
ApeKI GCWGC 5 cut(s) 124, 266, 428, 696, 1255
ApoI RAATTY 2 cut(s) 976, 1283
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 4 cut(s) 169, 198, 280, 952
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 5 cut(s) 136, 383, 392, 582, 1117
AsuII TTCGAA 1 cut(s) 1049
AvaII GGWCC 4 cut(s) 169, 198, 280, 952
BaeGI GKGCMC 2 cut(s) 83, 873
BalI TGGCCA 2 cut(s) 437, 510
BanI GGYRCC 1 cut(s) 870
BbvI GCAGC 5 cut(s) 111, 253, 440, 708, 1267
BccI CCATC 7 cut(s) 519, 769, 806, 859, 1004, 1327, 1386
BceAI ACGGC 2 cut(s) 60, 102
BciT130I CCWGG 2 cut(s) 174, 1188
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 3 cut(s) 629, 839, 1188
BfaI CTAG 3 cut(s) 1043, 1140, 1412
BfmI CTRYAG 2 cut(s) 807, 840
BfoI RGCGCY 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 62
Bme1390I CCNGG 3 cut(s) 174, 1188, 1218
Bme18I GGWCC 4 cut(s) 169, 198, 280, 952
BmgT120I GGNCC 4 cut(s) 169, 198, 280, 952
BmiI GGNNCC 6 cut(s) 61, 171, 199, 281, 872, 892
BmrFI CCNGG 3 cut(s) 174, 1188, 1218
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 900
Bpu14I TTCGAA 1 cut(s) 1049
BpuMI CCSGG 1 cut(s) 1218
BsaAI YACGTR 1 cut(s) 1449
BsaHI GRCGYC 3 cut(s) 89, 131, 177
BsaI GGTCTC 1 cut(s) 839
BsaJI CCNNGG 5 cut(s) 42, 111, 147, 172, 738
Bsc4I CCNNNNNNNGG 5 cut(s) 276, 521, 775, 812, 900
Bse1I ACTGG 2 cut(s) 80, 917
Bse3DI GCAATG 4 cut(s) 362, 420, 463, 1185
BseBI CCWGG 2 cut(s) 174, 1188
BseDI CCNNGG 5 cut(s) 42, 111, 147, 172, 738
BseGI GGATG 3 cut(s) 511, 1378, 1407
BseLI CCNNNNNNNGG 5 cut(s) 276, 521, 775, 812, 900
BseMI GCAATG 4 cut(s) 362, 420, 463, 1185
BseMII CTCAG 2 cut(s) 589, 913
BseNI ACTGG 2 cut(s) 80, 917
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 2 cut(s) 83, 873
BseXI GCAGC 5 cut(s) 111, 253, 440, 708, 1267
BsgI GTGCAG 1 cut(s) 1290
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 8 cut(s) 47, 437, 510, 805, 861, 904, 1216, 1385
BshNI GGYRCC 1 cut(s) 870
BsiSI CCGG 2 cut(s) 1217, 1382
BslFI GGGAC 1 cut(s) 1133
BslI CCNNNNNNNGG 5 cut(s) 276, 521, 775, 812, 900
BsmAI GTCTC 3 cut(s) 629, 839, 1188
BsmFI GGGAC 1 cut(s) 1133
BsmI GAATGC 2 cut(s) 222, 679
BsnI GGCC 8 cut(s) 47, 437, 510, 805, 861, 904, 1216, 1385
Bso31I GGTCTC 1 cut(s) 839
Bsp119I TTCGAA 1 cut(s) 1049
Bsp1286I GDGCHC 2 cut(s) 83, 873
Bsp143I GATC 2 cut(s) 726, 1315
BspANI GGCC 8 cut(s) 47, 437, 510, 805, 861, 904, 1216, 1385
BspCNI CTCAG 2 cut(s) 588, 912
BspFNI CGCG 1 cut(s) 167
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 6 cut(s) 61, 171, 199, 281, 872, 892
BspMAI CTGCAG 1 cut(s) 844
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 1 cut(s) 1310
BspT104I TTCGAA 1 cut(s) 1049
BspT107I GGYRCC 1 cut(s) 870
BspTNI GGTCTC 1 cut(s) 839
BsrBI CCGCTC 2 cut(s) 410, 818
BsrDI GCAATG 4 cut(s) 362, 420, 463, 1185
BsrI ACTGG 2 cut(s) 80, 917
BssECI CCNNGG 5 cut(s) 42, 111, 147, 172, 738
BssMI GATC 2 cut(s) 726, 1315
BssNI GRCGYC 3 cut(s) 89, 131, 177
BssT1I CCWWGG 3 cut(s) 111, 147, 738
Bst2UI CCWGG 2 cut(s) 174, 1188
Bst4CI ACNGT 3 cut(s) 217, 760, 1312
Bst6I CTCTTC 3 cut(s) 32, 259, 838
BstACI GRCGYC 3 cut(s) 89, 131, 177
BstBAI YACGTR 1 cut(s) 1449
BstBI TTCGAA 1 cut(s) 1049
BstC8I GCNNGC 2 cut(s) 581, 1164
BstDEI CTNAG 5 cut(s) 206, 575, 771, 899, 943
BstDSI CCRYGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 3 cut(s) 511, 1378, 1407
BstFNI CGCG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 729, 1318
BstMAI GTCTC 3 cut(s) 629, 839, 1188
BstMBI GATC 2 cut(s) 726, 1315
BstMWI GCNNNNNNNGC 5 cut(s) 44, 321, 434, 824, 1151
BstNI CCWGG 2 cut(s) 174, 1188
BstNSI RCATGY 2 cut(s) 1158, 1166
BstSCI CCNGG 3 cut(s) 172, 1186, 1216
BstSFI CTRYAG 2 cut(s) 807, 840
BstSLI GKGCMC 2 cut(s) 83, 873
BstSNI TACGTA 1 cut(s) 1449
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 5 cut(s) 111, 253, 440, 708, 1267
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 8 cut(s) 47, 437, 510, 805, 861, 904, 1216, 1385
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 3 cut(s) 511, 1378, 1407
BtsI GCAGTG 2 cut(s) 837, 1180
BtsIMutI CAGTG 3 cut(s) 213, 837, 1180
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 581, 1164
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 852
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 169, 198, 280, 952
CseI GACGC 5 cut(s) 78, 166, 173, 199, 1073
Csp6I GTAC 3 cut(s) 1024, 1081, 1415
CviAII CATG 6 cut(s) 284, 553, 568, 853, 1155, 1163
CviQI GTAC 3 cut(s) 1024, 1081, 1415
DdeI CTNAG 5 cut(s) 206, 575, 771, 899, 943
DpnI GATC 2 cut(s) 728, 1317
DpnII GATC 2 cut(s) 726, 1315
DraI TTTAAA 1 cut(s) 667
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 3 cut(s) 435, 508, 1214
Eam1104I CTCTTC 3 cut(s) 32, 259, 838
EarI CTCTTC 3 cut(s) 32, 259, 838
EciI GGCGGA 1 cut(s) 617
Eco105I TACGTA 1 cut(s) 1449
Eco130I CCWWGG 3 cut(s) 111, 147, 738
Eco147I AGGCCT 2 cut(s) 861, 904
Eco31I GGTCTC 1 cut(s) 839
Eco47I GGWCC 4 cut(s) 169, 198, 280, 952
Eco47III AGCGCT 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 353
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 172, 1186
EcoT14I CCWWGG 3 cut(s) 111, 147, 738
EcoT22I ATGCAT 1 cut(s) 1237
ErhI CCWWGG 3 cut(s) 111, 147, 738
FaeI CATG 6 cut(s) 287, 556, 571, 856, 1158, 1166
FaqI GGGAC 1 cut(s) 1133
FatI CATG 6 cut(s) 283, 552, 567, 852, 1154, 1162
FauNDI CATATG 1 cut(s) 1231
FokI GGATG 3 cut(s) 498, 1365, 1414
FspBI CTAG 3 cut(s) 1043, 1140, 1412
GlaI GCGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 900
HaeII RGCGCY 1 cut(s) 191
HaeIII GGCC 8 cut(s) 47, 437, 510, 805, 861, 904, 1216, 1385
HapII CCGG 2 cut(s) 1217, 1382
HgaI GACGC 5 cut(s) 78, 166, 173, 199, 1073
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 3 cut(s) 89, 131, 177
Hin1II CATG 6 cut(s) 287, 556, 571, 856, 1158, 1166
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HinfI GANTC 3 cut(s) 488, 503, 765
HpaII CCGG 2 cut(s) 1217, 1382
HphI GGTGA 5 cut(s) 136, 383, 392, 582, 1117
Hpy166II GTNNAC 5 cut(s) 73, 756, 1002, 1063, 1108
Hpy188I TCNGA 3 cut(s) 372, 502, 1266
Hpy188III TCNNGA 2 cut(s) 853, 888
Hpy8I GTNNAC 5 cut(s) 73, 756, 1002, 1063, 1108
Hpy99I CGWCG 3 cut(s) 88, 94, 167
HpyAV CCTTC 8 cut(s) 256, 502, 525, 625, 859, 884, 1094, 1400
HpyCH4III ACNGT 3 cut(s) 217, 760, 1312
HpyCH4IV ACGT 3 cut(s) 131, 1074, 1448
HpyCH4V TGCA 9 cut(s) 602, 677, 842, 1133, 1162, 1173, 1178, 1235, 1271
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 321, 434, 824, 1151
HpyF3I CTNAG 5 cut(s) 206, 575, 771, 899, 943
HpySE526I ACGT 3 cut(s) 131, 1074, 1448
Hsp92I GRCGYC 3 cut(s) 89, 131, 177
Hsp92II CATG 6 cut(s) 287, 556, 571, 856, 1158, 1166
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 726, 1315
LmnI GCTCC 5 cut(s) 59, 121, 407, 815, 1205
Lsp1109I GCAGC 5 cut(s) 111, 253, 440, 708, 1267
MaeI CTAG 3 cut(s) 1043, 1140, 1412
MaeII ACGT 3 cut(s) 131, 1074, 1448
MaeIII GTNAC 6 cut(s) 142, 211, 292, 742, 789, 1220
MalI GATC 2 cut(s) 728, 1317
MbiI CCGCTC 2 cut(s) 410, 818
MboI GATC 2 cut(s) 726, 1315
MboII GAAGA 3 cut(s) 19, 246, 825
MhlI GDGCHC 2 cut(s) 83, 873
MlsI TGGCCA 2 cut(s) 437, 510
MluCI AATT 7 cut(s) 333, 386, 586, 780, 976, 1283, 1330
MluNI TGGCCA 2 cut(s) 437, 510
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 3 cut(s) 159, 331, 429
Mox20I TGGCCA 2 cut(s) 437, 510
Mph1103I ATGCAT 1 cut(s) 1237
MscI TGGCCA 2 cut(s) 437, 510
MseI TTAA 5 cut(s) 240, 330, 666, 1239, 1301
MslI CAYNNNNRTG 3 cut(s) 68, 288, 993
Msp20I TGGCCA 2 cut(s) 437, 510
MspA1I CMGCKG 1 cut(s) 1278
MspI CCGG 2 cut(s) 1217, 1382
MspR9I CCNGG 3 cut(s) 174, 1188, 1218
Mva1269I GAATGC 2 cut(s) 222, 679
MvaI CCWGG 2 cut(s) 174, 1188
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 5 cut(s) 44, 321, 434, 824, 1151
NciI CCSGG 1 cut(s) 1218
NdeI CATATG 1 cut(s) 1231
NdeII GATC 2 cut(s) 726, 1315
NlaIII CATG 6 cut(s) 287, 556, 571, 856, 1158, 1166
NlaIV GGNNCC 6 cut(s) 61, 171, 199, 281, 872, 892
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 4 cut(s) 142, 211, 292, 789
NsiI ATGCAT 1 cut(s) 1237
NspI RCATGY 2 cut(s) 1158, 1166
NspV TTCGAA 1 cut(s) 1049
PaeI GCATGC 1 cut(s) 1166
PagI TCATGA 1 cut(s) 852
PceI AGGCCT 2 cut(s) 861, 904
PcsI WCGNNNNNNNCGW 1 cut(s) 1071
PctI GAATGC 2 cut(s) 222, 679
PfeI GAWTC 2 cut(s) 488, 765
PflFI GACNNNGTC 2 cut(s) 88, 290
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
Ppu21I YACGTR 1 cut(s) 1449
Psp1406I AACGTT 1 cut(s) 1074
Psp6I CCWGG 2 cut(s) 172, 1186
PspGI CCWGG 2 cut(s) 172, 1186
PspN4I GGNNCC 6 cut(s) 61, 171, 199, 281, 872, 892
PspPI GGNCC 4 cut(s) 169, 198, 280, 952
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 506
PsyI GACNNNGTC 2 cut(s) 88, 290
PvuII CAGCTG 1 cut(s) 1278
RsaI GTAC 3 cut(s) 1025, 1082, 1416
RsaNI GTAC 3 cut(s) 1024, 1081, 1415
RseI CAYNNNNRTG 3 cut(s) 68, 288, 993
SaqAI TTAA 5 cut(s) 240, 330, 666, 1239, 1301
Sau3AI GATC 2 cut(s) 726, 1315
Sau96I GGNCC 4 cut(s) 169, 198, 280, 952
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 3 cut(s) 174, 1188, 1218
SduI GDGCHC 2 cut(s) 83, 873
SfcI CTRYAG 2 cut(s) 807, 840
SfuI TTCGAA 1 cut(s) 1049
SinI GGWCC 4 cut(s) 169, 198, 280, 952
SmiMI CAYNNNNRTG 3 cut(s) 68, 288, 993
SnaBI TACGTA 1 cut(s) 1449
SphI GCATGC 1 cut(s) 1166
Sse9I AATT 7 cut(s) 333, 386, 586, 780, 976, 1283, 1330
SseBI AGGCCT 2 cut(s) 861, 904
SspI AATATT 1 cut(s) 421
SspMI CTAG 3 cut(s) 1043, 1140, 1412
StuI AGGCCT 2 cut(s) 861, 904
StyD4I CCNGG 3 cut(s) 172, 1186, 1216
StyI CCWWGG 3 cut(s) 111, 147, 738
TaaI ACNGT 3 cut(s) 217, 760, 1312
TaiI ACGT 3 cut(s) 134, 1077, 1451
TaqI TCGA 7 cut(s) 162, 183, 651, 720, 921, 981, 1049
TasI AATT 7 cut(s) 333, 386, 586, 780, 976, 1283, 1330
TauI GCSGC 6 cut(s) 318, 321, 324, 413, 821, 1293
TfiI GAWTC 2 cut(s) 488, 765
Tru1I TTAA 5 cut(s) 240, 330, 666, 1239, 1301
Tru9I TTAA 5 cut(s) 240, 330, 666, 1239, 1301
TscAI CASTG 3 cut(s) 220, 844, 1180
TseFI GTSAC 4 cut(s) 142, 211, 292, 789
TseI GCWGC 5 cut(s) 124, 266, 428, 696, 1255
Tsp45I GTSAC 4 cut(s) 142, 211, 292, 789
TspDTI ATGAA 5 cut(s) 431, 607, 841, 869, 1027
TspRI CASTG 3 cut(s) 220, 844, 1180
Tth111I GACNNNGTC 2 cut(s) 88, 290
VpaK11BI GGWCC 4 cut(s) 169, 198, 280, 952
XagI CCTNNNNNAGG 1 cut(s) 519
XapI RAATTY 2 cut(s) 976, 1283
XceI RCATGY 2 cut(s) 1158, 1166
XcmI CCANNNNNNNNNTGG 2 cut(s) 445, 1099
XspI CTAG 3 cut(s) 1043, 1140, 1412
ZraI GACGTC 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.