Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006990.1

Orthogroup ID

OG0011293

Physical Location & Seq

Genomic Coordinates Reverse (-)

45511 .. 46851

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006990.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atggtagatgctgagtctgagtccttgctagggctagttagcaatgcaagaagagttagaaaatcaatgtatgttgctgtgggagatgaaccatttctccagagttatggtgagcaatttcacccctttgtgcttggagcagcaatcaatatccaaacagctttgacccaagcaaacttggacagcaaggtgaaagtagtggttccctgcagttttgattcctatttgtcagagactagccttccttcaaaaggacatttccgagctgatgtcaacaggaccgtgattcaactgctgacgtttctcagcaagcacaactcaccattttttgcaaccatttccccgttcctagctttccaacagaacaagaacatttccctcgactttactctcttcaaaatatacaccaaagctcataacgacagtcgcagaatgtacaaaaacagctttgacttgaactatgacatcttggttaatgcattgtcaacagtagggtttcctaagattgaaattgttgtgtcacagattggttggcctacagatggaggaccaaatgctacttcatatgctgcagagaccttcatgaaaggcctgatgaaccgccttcgtagcaaattggggaccccacttagacctcgagatcctccagttgaaacatacatttttagcctcttagatgaagatcaaagaagcataagcactggaaattttgagagacattggggcgttttcacttttgatggtcaagccaagtaccgttttgattttacccaaggttcaaacagccttgtgaatgcacagaatgttgagtaccttccttccaagtggtgtgtggtgaacaataacagggacttatctaacgcgactgcgagtgcattaaatgcatgttcccttgctgattgtagtgcactgtctcctggtggatcttgttccaacatcagttggcctgggaatatctcgtatgcgtttaatagctactatcagcagcgtaatcagagtgcagacagctgcgactttggtggccttggtttgatcacaactgttaatccatcagtggataactgcaggtttttggttcaactgaacacttccctttcagatacccttcatccggcctctgtttcccagtggattaccttgctagtgacagccattttattacttttaccacgatttacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

393

Amino Acids

43.55

Weight (kDa)

6.99

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58480
fragaria_vesca	FvH4_3g39500
malus_domestica	MD03G1060400.v1.1 MD11G1063500.v1.1
prunus_persica	Prupe.6G050800_v2.0.a1 Prupe.6G050800_v2.0.a1 Prupe.6G050800_v2.0.a1
pyrus_communis	pycom03g04850 pycom11g05320
rosa_chinensis	RchiOBHm_Chr5g0071271
rosa_laevigata	RLG00000036197
rosa_multiflora	Rmu_sc0000637.1_g000002 Rmu_sc0006990.1_g000012
rosa_roxburghii	Rroxscaffold_1G00009870
rosa_rugosa	Rorug05G0411000
rosa_samantha	Rh5AG467100 Rh5BG485700 Rh5CG510100 Rh5DG496900
rosa_wichuraiana	Rw5G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1056
AccII	CGCG	1 cut(s)	863
AciI	CCGC	1 cut(s)	601
AclWI	GGATC	2 cut(s)	635, 931
AcsI	RAATTY	1 cut(s)	706
AfaI	GTAC	3 cut(s)	437, 755, 812
AfiI	CCNNNNNNNGG	4 cut(s)	30, 251, 542, 1111
AgsI	TTSAA	8 cut(s)	249, 290, 397, 457, 509, 653, 780, 1079
AjnI	CCWGG	2 cut(s)	916, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	544, 576
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	7 cut(s)	161, 266, 353, 413, 447, 975, 1008
AluI	AGCT	7 cut(s)	161, 266, 353, 413, 447, 975, 1008
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	4 cut(s)	227, 569, 709, 918
Alw44I	GTGCAC	1 cut(s)	906
AlwI	GGATC	2 cut(s)	635, 931
Ama87I	CYCGRG	1 cut(s)	636
AoxI	GGCC	5 cut(s)	533, 589, 944, 1021, 1113
ApaLI	GTGCAC	1 cut(s)	906
ApeKI	GCWGC	4 cut(s)	140, 569, 985, 1008
ApoI	RAATTY	1 cut(s)	706
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	3 cut(s)	279, 548, 621
AsuHPI	GGTGA	5 cut(s)	113, 122, 202, 312, 847
AvaI	CYCGRG	1 cut(s)	636
AvaII	GGWCC	3 cut(s)	279, 548, 621
BaeGI	GKGCMC	1 cut(s)	910
Bbv12I	GWGCWC	1 cut(s)	910
BbvI	GCAGC	4 cut(s)	152, 556, 995, 997
BccI	CCATC	3 cut(s)	536, 734, 1057
BciT130I	CCWGG	2 cut(s)	918, 948
BclI	TGATCA	1 cut(s)	1032
BcoDI	GTCTC	4 cut(s)	227, 569, 709, 918
BfaI	CTAG	6 cut(s)	29, 35, 237, 350, 1142, 1180
BfmI	CTRYAG	4 cut(s)	208, 537, 570, 1063
BfuAI	ACCTGC	1 cut(s)	1056
BisI	GCNGC	4 cut(s)	141, 570, 986, 1009
BlsI	GCNGC	4 cut(s)	142, 571, 987, 1010
Bme1390I	CCNGG	2 cut(s)	918, 948
Bme18I	GGWCC	3 cut(s)	279, 548, 621
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	279, 548, 621
BmiI	GGNNCC	3 cut(s)	204, 622, 623
BmrFI	CCNGG	2 cut(s)	918, 948
BmrI	ACTGGG	1 cut(s)	1120
BmuI	ACTGGG	1 cut(s)	1120
BpmI	CTGGAG	2 cut(s)	83, 630
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	772, 947, 1024
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 251, 542, 1111
Bse1I	ACTGG	3 cut(s)	647, 706, 1126
Bse3DI	GCAATG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	2 cut(s)	918, 948
BseDI	CCNNGG	3 cut(s)	772, 947, 1024
BseGI	GGATG	1 cut(s)	1108
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	4 cut(s)	30, 251, 542, 1111
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	9, 319
BseNI	ACTGG	3 cut(s)	647, 706, 1126
BseSI	GKGCMC	1 cut(s)	910
BseXI	GCAGC	4 cut(s)	152, 556, 995, 997
BsgI	GTGCAG	1 cut(s)	1020
Bsh1236I	CGCG	1 cut(s)	863
BshFI	GGCC	5 cut(s)	535, 591, 946, 1023, 1115
BsiHKAI	GWGCWC	1 cut(s)	910
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	1112
BslFI	GGGAC	2 cut(s)	634, 863
BslI	CCNNNNNNNGG	4 cut(s)	30, 251, 542, 1111
BsmAI	GTCTC	4 cut(s)	227, 569, 709, 918
BsmFI	GGGAC	2 cut(s)	634, 863
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	5 cut(s)	535, 591, 946, 1023, 1115
Bso31I	GGTCTC	1 cut(s)	569
BsoBI	CYCGRG	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	640, 682, 923, 1032
BspACI	CCGC	1 cut(s)	601
BspANI	GGCC	5 cut(s)	535, 591, 946, 1023, 1115
BspCNI	CTCAG	3 cut(s)	4, 10, 318
BspFNI	CGCG	1 cut(s)	863
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	204, 622, 623
BspMAI	CTGCAG	3 cut(s)	212, 574, 1067
BspMI	ACCTGC	1 cut(s)	1056
BspPI	GGATC	2 cut(s)	635, 931
BspTNI	GGTCTC	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	3 cut(s)	647, 706, 1126
BssECI	CCNNGG	3 cut(s)	772, 947, 1024
BssMI	GATC	4 cut(s)	640, 682, 923, 1032
BssT1I	CCWWGG	2 cut(s)	772, 1024
Bst2UI	CCWGG	2 cut(s)	918, 948
Bst4CI	ACNGT	6 cut(s)	283, 425, 490, 758, 912, 1042
Bst6I	CTCTTC	2 cut(s)	46, 398
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	6 cut(s)	12, 18, 305, 501, 629, 673
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	1108
BstFNI	CGCG	1 cut(s)	863
BstKTI	GATC	4 cut(s)	643, 685, 926, 1035
BstMAI	GTCTC	4 cut(s)	227, 569, 709, 918
BstMBI	GATC	4 cut(s)	640, 682, 923, 1032
BstMWI	GCNNNNNNNGC	2 cut(s)	609, 881
BstNI	CCWGG	2 cut(s)	918, 948
BstNSI	RCATGY	1 cut(s)	888
BstSCI	CCNGG	2 cut(s)	916, 946
BstSFI	CTRYAG	4 cut(s)	208, 537, 570, 1063
BstSLI	GKGCMC	1 cut(s)	910
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	4 cut(s)	152, 556, 995, 997
BstX2I	RGATCY	2 cut(s)	640, 923
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	2 cut(s)	640, 923
BsuRI	GGCC	5 cut(s)	535, 591, 946, 1023, 1115
BtsCI	GGATG	1 cut(s)	1108
BtsIMutI	CAGTG	4 cut(s)	699, 908, 1059, 1133
BveI	ACCTGC	1 cut(s)	1056
Cac8I	GCNNGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	582
Cfr13I	GGNCC	3 cut(s)	279, 548, 621
Csp6I	GTAC	3 cut(s)	436, 754, 811
CviAII	CATG	2 cut(s)	583, 885
CviQI	GTAC	3 cut(s)	436, 754, 811
DdeI	CTNAG	6 cut(s)	12, 18, 305, 501, 629, 673
DpnI	GATC	4 cut(s)	642, 684, 925, 1034
DpnII	GATC	4 cut(s)	640, 682, 923, 1032
Eam1104I	CTCTTC	2 cut(s)	46, 398
EarI	CTCTTC	2 cut(s)	46, 398
Eco130I	CCWWGG	2 cut(s)	772, 1024
Eco147I	AGGCCT	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	569
Eco47I	GGWCC	3 cut(s)	279, 548, 621
Eco88I	CYCGRG	1 cut(s)	636
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	916, 946
EcoT14I	CCWWGG	2 cut(s)	772, 1024
EcoT22I	ATGCAT	2 cut(s)	481, 886
ErhI	CCWWGG	2 cut(s)	772, 1024
FaeI	CATG	2 cut(s)	586, 888
FaqI	GGGAC	2 cut(s)	634, 863
FatI	CATG	2 cut(s)	582, 884
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	1 cut(s)	1032
Fnu4HI	GCNGC	4 cut(s)	141, 570, 986, 1009
FokI	GGATG	1 cut(s)	1095
Fsp4HI	GCNGC	4 cut(s)	141, 570, 986, 1009
FspBI	CTAG	6 cut(s)	29, 35, 237, 350, 1142, 1180
GluI	GCNGC	4 cut(s)	141, 570, 986, 1009
GsuI	CTGGAG	2 cut(s)	83, 630
HaeIII	GGCC	5 cut(s)	535, 591, 946, 1023, 1115
HapII	CCGG	1 cut(s)	1112
Hin1II	CATG	2 cut(s)	586, 888
HincII	GTYRAC	2 cut(s)	274, 486
HindII	GTYRAC	2 cut(s)	274, 486
HinfI	GANTC	4 cut(s)	14, 20, 218, 286
HpaII	CCGG	1 cut(s)	1112
HphI	GGTGA	5 cut(s)	113, 122, 202, 312, 847
Hpy166II	GTNNAC	4 cut(s)	274, 486, 838, 908
Hpy188I	TCNGA	5 cut(s)	19, 232, 263, 996, 1099
Hpy188III	TCNNGA	3 cut(s)	100, 583, 638
Hpy8I	GTNNAC	4 cut(s)	274, 486, 838, 908
HpyAV	CCTTC	7 cut(s)	251, 255, 589, 614, 824, 828, 1115
HpyCH4III	ACNGT	6 cut(s)	283, 425, 490, 758, 912, 1042
HpyCH4IV	ACGT	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	609, 881
HpyF3I	CTNAG	6 cut(s)	12, 18, 305, 501, 629, 673
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	586, 888
KflI	GGGWCCC	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	1032
Kzo9I	GATC	4 cut(s)	640, 682, 923, 1032
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	4 cut(s)	152, 556, 995, 997
MaeI	CTAG	6 cut(s)	29, 35, 237, 350, 1142, 1180
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	519, 1144
MalI	GATC	4 cut(s)	642, 684, 925, 1034
MboI	GATC	4 cut(s)	640, 682, 923, 1032
MboII	GAAGA	3 cut(s)	63, 385, 692
MflI	RGATCY	2 cut(s)	640, 923
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	4 cut(s)	116, 510, 614, 706
MlyI	GAGTC	2 cut(s)	23, 29
MmeI	TCCRAC	2 cut(s)	382, 957
MnlI	CCTC	6 cut(s)	389, 539, 645, 654, 680, 1126
Mph1103I	ATGCAT	2 cut(s)	481, 886
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	4 cut(s)	474, 878, 969, 1044
MspA1I	CMGCKG	1 cut(s)	1008
MspI	CCGG	1 cut(s)	1112
MspR9I	CCNGG	2 cut(s)	918, 948
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	2 cut(s)	918, 948
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	2 cut(s)	609, 881
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	4 cut(s)	640, 682, 923, 1032
NlaIII	CATG	2 cut(s)	586, 888
NlaIV	GGNNCC	3 cut(s)	204, 622, 623
NmuCI	GTSAC	2 cut(s)	519, 1144
NsiI	ATGCAT	2 cut(s)	481, 886
NspI	RCATGY	1 cut(s)	888
PaeR7I	CTCGAG	1 cut(s)	636
PagI	TCATGA	1 cut(s)	582
PceI	AGGCCT	1 cut(s)	591
PctI	GAATGC	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	218, 286
PkrI	GCNGC	4 cut(s)	142, 571, 987, 1010
PleI	GAGTC	2 cut(s)	22, 28
PpsI	GAGTC	2 cut(s)	22, 28
PpuMI	RGGWCCY	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	916, 946
PspGI	CCWGG	2 cut(s)	916, 946
PspN4I	GGNNCC	3 cut(s)	204, 622, 623
PspPI	GGNCC	3 cut(s)	279, 548, 621
PspPPI	RGGWCCY	1 cut(s)	621
PstI	CTGCAG	3 cut(s)	212, 574, 1067
PsuI	RGATCY	2 cut(s)	640, 923
PvuII	CAGCTG	1 cut(s)	1008
RsaI	GTAC	3 cut(s)	437, 755, 812
RsaNI	GTAC	3 cut(s)	436, 754, 811
SaqAI	TTAA	4 cut(s)	474, 878, 969, 1044
SatI	GCNGC	4 cut(s)	141, 570, 986, 1009
Sau3AI	GATC	4 cut(s)	640, 682, 923, 1032
Sau96I	GGNCC	3 cut(s)	279, 548, 621
SchI	GAGTC	2 cut(s)	23, 29
ScrFI	CCNGG	2 cut(s)	918, 948
SduI	GDGCHC	1 cut(s)	910
SfcI	CTRYAG	4 cut(s)	208, 537, 570, 1063
Sfr274I	CTCGAG	1 cut(s)	636
SinI	GGWCC	3 cut(s)	279, 548, 621
SlaI	CTCGAG	1 cut(s)	636
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	4 cut(s)	116, 510, 614, 706
SseBI	AGGCCT	1 cut(s)	591
SsiI	CCGC	1 cut(s)	601
SspMI	CTAG	6 cut(s)	29, 35, 237, 350, 1142, 1180
StuI	AGGCCT	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	916, 946
StyI	CCWWGG	2 cut(s)	772, 1024
TaaI	ACNGT	6 cut(s)	283, 425, 490, 758, 912, 1042
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	381, 637
TasI	AATT	4 cut(s)	116, 510, 614, 706
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	218, 286
Tru1I	TTAA	4 cut(s)	474, 878, 969, 1044
Tru9I	TTAA	4 cut(s)	474, 878, 969, 1044
TscAI	CASTG	4 cut(s)	706, 915, 1059, 1133
TseFI	GTSAC	2 cut(s)	519, 1144
TseI	GCWGC	4 cut(s)	140, 569, 985, 1008
Tsp45I	GTSAC	2 cut(s)	519, 1144
TspDTI	ATGAA	7 cut(s)	102, 552, 571, 599, 611, 693, 1097
TspRI	CASTG	4 cut(s)	706, 915, 1059, 1133
VneI	GTGCAC	1 cut(s)	906
VpaK11BI	GGWCC	3 cut(s)	279, 548, 621
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	706
XceI	RCATGY	1 cut(s)	888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XhoI	CTCGAG	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	6 cut(s)	29, 35, 237, 350, 1142, 1180
Zsp2I	ATGCAT	2 cut(s)	481, 886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.