Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011293

Physical Location & Seq

Genomic Coordinates Forward (+)

77367403 .. 77368800

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036197

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCAAGAAGAGTTAGAAAATCAATGTTTGTGGCAGGAGTTTCATAGGTCGCCTACTCAACAGCCTCATAAAGTAACCACATACTACTTGTTTTGTTTATTTAATCCAGATACAAGGGACGTTGCTCGTCCAAGAGATTGCTGTTTCCTTTTGTATTTATTGGTGGCTAACTCGAATGATTCCAGGTATGTTGCTGTGGGAGATGAACCATTTCTCCAGAGTTATGGTGAGCAATTTCACCCCTTTGTGCTTGGAGCAGCAATCAATATCCAAACAGCTTTGACGCAAGCAAACTTGGACAGCAACGTGAAAGTAGTGGTTCCTTGCAGTTTTGATTCCTATTTGTCAGAGACTAGCCTTCCTTCAAAAGGACATTTCCGAGCCGATGTCAACAGGACCATGATTCAACTGCTGACGTTTCTCAGCAAGCACAACTCACCATTTTTTGCAACCATTTCCCCGTTCCTAGCTTTCCAACAGAACAAGAACATTTCCCTTGACTTTACTCTCTTCAAAGTATACACCAGAGCTCATAACGACAGTCGCAGAATGTACAAAAACAGCTTTGACTTGAACTATGACATCTTGGTTAATGCATTGTCAACGGTAGGGTTTCCTAAGATTGATATTGTTGTGTCACAGATTGGTTGGCCTACAGATGGAGGACCAAATGCTACTTCATATGCTGCAGAGACCTTCATGAAAGGCCTGATGAACCGCCTTCGTAGCAAATTGGGGACCCCACTTAGACCTCGAGATCCTCCAGTTGAAACATACATTTTTAGCCTCTTAGATGAAGATCAAAGAAGCATAAGCACTGGAAATTTTGAGAGACATTGGGGCGTTTTCACTTTTGATGGTCAAGCCAAGTACCGTTTTGATTTTACCCAAGGTTCAAACAGCCTTTTGAATGCACAGAATGTTGAGTACCTTCCTTCCAAGTGGTGTGTGGTGAACAATAACAGGGACTTATCTAACGCAACTGTGAGTGCATTAAATGCATGTTCCCTTGCTGATTGTAGTGCACTGTCTCCTGGTGGATCTTGTTCCAACATCAGTTGGCCTGGGAATATCTCGTATGCGTTTAATAACTACTATCAGCAGCGTAATCAGAGTGCAGACAGCTGCGACTTTGGTGGCCTTGGTTTGATCACAACTGTTAATCCATCTGTGGATAACTGCAGGTTTTTGGTTCAACTGAACACTTCGCTTTCAGATACTGTTCATCCGGCCTCTGTTTCCCAGTGGATTACCTTGCTAGTGACAGCCATTTTGTTACTTTTACCACGATTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

433

Amino Acids

48.56

Weight (kDa)

6.07

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	60 - 295	8.6e-43	Glycosyl hydrolases family 17
X8	PF07983	314 - 382	1.9e-14	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58480
fragaria_vesca	FvH4_3g39500
malus_domestica	MD03G1060400.v1.1 MD11G1063500.v1.1
prunus_persica	Prupe.6G050800_v2.0.a1 Prupe.6G050800_v2.0.a1 Prupe.6G050800_v2.0.a1
pyrus_communis	pycom03g04850 pycom11g05320
rosa_chinensis	RchiOBHm_Chr5g0071271
rosa_laevigata	RLG00000036197
rosa_multiflora	Rmu_sc0000637.1_g000002 Rmu_sc0006990.1_g000012
rosa_roxburghii	Rroxscaffold_1G00009870
rosa_rugosa	Rorug05G0411000
rosa_samantha	Rh5AG467100 Rh5BG485700 Rh5CG510100 Rh5DG496900
rosa_wichuraiana	Rw5G043400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1173
AccI	GTMKAC	1 cut(s)	519
AciI	CCGC	1 cut(s)	718
AclWI	GGATC	2 cut(s)	752, 1048
AcsI	RAATTY	1 cut(s)	823
AfaI	GTAC	3 cut(s)	554, 872, 929
AfiI	CCNNNNNNNGG	2 cut(s)	368, 659
AgsI	TTSAA	8 cut(s)	366, 407, 514, 574, 770, 897, 910, 1196
AjnI	CCWGG	3 cut(s)	182, 1033, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	5 cut(s)	278, 470, 530, 564, 1125
AluI	AGCT	5 cut(s)	278, 470, 530, 564, 1125
Alw21I	GWGCWC	2 cut(s)	532, 1027
Alw26I	GTCTC	4 cut(s)	344, 686, 826, 1035
Alw44I	GTGCAC	1 cut(s)	1023
AlwI	GGATC	2 cut(s)	752, 1048
AlwNI	CAGNNNCTG	1 cut(s)	1220
Ama87I	CYCGRG	1 cut(s)	753
AoxI	GGCC	5 cut(s)	650, 706, 1061, 1138, 1230
ApaLI	GTGCAC	1 cut(s)	1023
ApeKI	GCWGC	4 cut(s)	257, 686, 1102, 1125
ApoI	RAATTY	1 cut(s)	823
ArsI	GACNNNNNNTTYG	2 cut(s)	1255, 1287
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	396, 665, 738
AsuHPI	GGTGA	4 cut(s)	230, 239, 429, 964
AvaI	CYCGRG	1 cut(s)	753
AvaII	GGWCC	3 cut(s)	396, 665, 738
BaeGI	GKGCMC	1 cut(s)	1027
BanII	GRGCYC	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	532, 1027
BbvI	GCAGC	4 cut(s)	269, 673, 1112, 1114
BccI	CCATC	3 cut(s)	653, 851, 1174
BciT130I	CCWGG	3 cut(s)	184, 1035, 1065
BclI	TGATCA	1 cut(s)	1149
BcoDI	GTCTC	4 cut(s)	344, 686, 826, 1035
BfaI	CTAG	4 cut(s)	354, 467, 1259, 1297
BfmI	CTRYAG	3 cut(s)	654, 687, 1180
BfuAI	ACCTGC	1 cut(s)	1173
BisI	GCNGC	4 cut(s)	258, 687, 1103, 1126
BlsI	GCNGC	4 cut(s)	259, 688, 1104, 1127
Bme1390I	CCNGG	3 cut(s)	184, 1035, 1065
Bme18I	GGWCC	3 cut(s)	396, 665, 738
BmeT110I	CYCGRG	1 cut(s)	753
BmgT120I	GGNCC	3 cut(s)	396, 665, 738
BmiI	GGNNCC	3 cut(s)	321, 739, 740
BmrFI	CCNGG	3 cut(s)	184, 1035, 1065
BmrI	ACTGGG	1 cut(s)	1237
BmuI	ACTGGG	1 cut(s)	1237
BpmI	CTGGAG	2 cut(s)	200, 747
BsaBI	GATNNNNATC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	3 cut(s)	889, 1064, 1141
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	368, 659
Bse1I	ACTGG	3 cut(s)	764, 823, 1243
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	3 cut(s)	184, 1035, 1065
BseDI	CCNNGG	3 cut(s)	889, 1064, 1141
BseGI	GGATG	1 cut(s)	1225
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	368, 659
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	3 cut(s)	764, 823, 1243
BseSI	GKGCMC	1 cut(s)	1027
BseXI	GCAGC	4 cut(s)	269, 673, 1112, 1114
BsgI	GTGCAG	1 cut(s)	1137
BshFI	GGCC	5 cut(s)	652, 708, 1063, 1140, 1232
BsiHKAI	GWGCWC	2 cut(s)	532, 1027
BsiHKCI	CYCGRG	1 cut(s)	753
BsiSI	CCGG	1 cut(s)	1229
BslFI	GGGAC	3 cut(s)	131, 751, 980
BslI	CCNNNNNNNGG	2 cut(s)	368, 659
BsmAI	GTCTC	4 cut(s)	344, 686, 826, 1035
BsmFI	GGGAC	3 cut(s)	131, 751, 980
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	5 cut(s)	652, 708, 1063, 1140, 1232
Bso31I	GGTCTC	1 cut(s)	686
BsoBI	CYCGRG	1 cut(s)	753
Bsp1286I	GDGCHC	2 cut(s)	532, 1027
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	4 cut(s)	757, 799, 1040, 1149
BspACI	CCGC	1 cut(s)	718
BspANI	GGCC	5 cut(s)	652, 708, 1063, 1140, 1232
BspCNI	CTCAG	1 cut(s)	435
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	3 cut(s)	321, 739, 740
BspMAI	CTGCAG	2 cut(s)	691, 1184
BspMI	ACCTGC	1 cut(s)	1173
BspPI	GGATC	2 cut(s)	752, 1048
BspTNI	GGTCTC	1 cut(s)	686
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	3 cut(s)	764, 823, 1243
BssECI	CCNNGG	3 cut(s)	889, 1064, 1141
BssMI	GATC	4 cut(s)	757, 799, 1040, 1149
BssNAI	GTATAC	1 cut(s)	520
BssT1I	CCWWGG	2 cut(s)	889, 1141
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	3 cut(s)	184, 1035, 1065
Bst4CI	ACNGT	7 cut(s)	542, 607, 875, 985, 1029, 1159, 1222
Bst6I	CTCTTC	2 cut(s)	3, 515
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	2 cut(s)	288, 428
BstDEI	CTNAG	4 cut(s)	422, 618, 746, 790
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	1225
BstKTI	GATC	4 cut(s)	760, 802, 1043, 1152
BstMAI	GTCTC	4 cut(s)	344, 686, 826, 1035
BstMBI	GATC	4 cut(s)	757, 799, 1040, 1149
BstMWI	GCNNNNNNNGC	2 cut(s)	726, 998
BstNI	CCWGG	3 cut(s)	184, 1035, 1065
BstNSI	RCATGY	1 cut(s)	1005
BstSCI	CCNGG	3 cut(s)	182, 1033, 1063
BstSFI	CTRYAG	3 cut(s)	654, 687, 1180
BstSLI	GKGCMC	1 cut(s)	1027
BstV1I	GCAGC	4 cut(s)	269, 673, 1112, 1114
BstX2I	RGATCY	2 cut(s)	757, 1040
BstXI	CCANNNNNNTGG	1 cut(s)	224
BstYI	RGATCY	2 cut(s)	757, 1040
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	5 cut(s)	652, 708, 1063, 1140, 1232
BtsCI	GGATG	1 cut(s)	1225
BtsIMutI	CAGTG	3 cut(s)	816, 1025, 1250
BveI	ACCTGC	1 cut(s)	1173
Cac8I	GCNNGC	2 cut(s)	288, 428
CaiI	CAGNNNCTG	1 cut(s)	1220
CciI	TCATGA	1 cut(s)	699
Cfr13I	GGNCC	3 cut(s)	396, 665, 738
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	553, 871, 928
CspCI	CAANNNNNGTGG	2 cut(s)	11, 46
CviAII	CATG	3 cut(s)	400, 700, 1002
CviQI	GTAC	3 cut(s)	553, 871, 928
DdeI	CTNAG	4 cut(s)	422, 618, 746, 790
DpnI	GATC	4 cut(s)	759, 801, 1042, 1151
DpnII	GATC	4 cut(s)	757, 799, 1040, 1149
Eam1104I	CTCTTC	2 cut(s)	3, 515
EarI	CTCTTC	2 cut(s)	3, 515
Ecl136II	GAGCTC	1 cut(s)	530
Eco130I	CCWWGG	2 cut(s)	889, 1141
Eco147I	AGGCCT	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	3 cut(s)	396, 665, 738
Eco53kI	GAGCTC	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	753
EcoICRI	GAGCTC	1 cut(s)	530
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	738
EcoRII	CCWGG	3 cut(s)	182, 1033, 1063
EcoT14I	CCWWGG	2 cut(s)	889, 1141
EcoT22I	ATGCAT	2 cut(s)	598, 1003
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	2 cut(s)	889, 1141
FaeI	CATG	3 cut(s)	403, 703, 1005
FaqI	GGGAC	3 cut(s)	131, 751, 980
FatI	CATG	3 cut(s)	399, 699, 1001
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	1149
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	4 cut(s)	258, 687, 1103, 1126
FokI	GGATG	1 cut(s)	1212
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	4 cut(s)	258, 687, 1103, 1126
FspBI	CTAG	4 cut(s)	354, 467, 1259, 1297
GluI	GCNGC	4 cut(s)	258, 687, 1103, 1126
GsuI	CTGGAG	2 cut(s)	200, 747
HaeIII	GGCC	5 cut(s)	652, 708, 1063, 1140, 1232
HapII	CCGG	1 cut(s)	1229
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	403, 703, 1005
HincII	GTYRAC	2 cut(s)	391, 603
HindII	GTYRAC	2 cut(s)	391, 603
HinfI	GANTC	3 cut(s)	179, 335, 403
HpaII	CCGG	1 cut(s)	1229
HphI	GGTGA	4 cut(s)	230, 239, 429, 964
Hpy166II	GTNNAC	5 cut(s)	391, 520, 603, 955, 1025
Hpy188I	TCNGA	4 cut(s)	349, 380, 1113, 1216
Hpy188III	TCNNGA	4 cut(s)	107, 217, 700, 755
Hpy8I	GTNNAC	5 cut(s)	391, 520, 603, 955, 1025
HpyAV	CCTTC	6 cut(s)	368, 372, 706, 731, 941, 945
HpyCH4III	ACNGT	7 cut(s)	542, 607, 875, 985, 1029, 1159, 1222
HpyCH4IV	ACGT	3 cut(s)	120, 306, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	726, 998
HpyF3I	CTNAG	4 cut(s)	422, 618, 746, 790
HpySE526I	ACGT	3 cut(s)	120, 306, 416
Hsp92II	CATG	3 cut(s)	403, 703, 1005
KflI	GGGWCCC	1 cut(s)	738
Ksp22I	TGATCA	1 cut(s)	1149
Kzo9I	GATC	4 cut(s)	757, 799, 1040, 1149
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	4 cut(s)	269, 673, 1112, 1114
MaeI	CTAG	4 cut(s)	354, 467, 1259, 1297
MaeII	ACGT	3 cut(s)	120, 306, 416
MaeIII	GTNAC	4 cut(s)	73, 636, 1261, 1275
MalI	GATC	4 cut(s)	759, 801, 1042, 1151
MboI	GATC	4 cut(s)	757, 799, 1040, 1149
MboII	GAAGA	3 cut(s)	20, 502, 809
MflI	RGATCY	2 cut(s)	757, 1040
MhlI	GDGCHC	2 cut(s)	532, 1027
MluCI	AATT	3 cut(s)	233, 731, 823
MmeI	TCCRAC	2 cut(s)	499, 1074
MnlI	CCTC	6 cut(s)	75, 656, 762, 771, 797, 1243
Mph1103I	ATGCAT	2 cut(s)	598, 1003
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	5 cut(s)	102, 591, 995, 1086, 1161
MspA1I	CMGCKG	1 cut(s)	1125
MspI	CCGG	1 cut(s)	1229
MspR9I	CCNGG	3 cut(s)	184, 1035, 1065
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	3 cut(s)	184, 1035, 1065
MwoI	GCNNNNNNNGC	2 cut(s)	726, 998
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	4 cut(s)	757, 799, 1040, 1149
NlaIII	CATG	3 cut(s)	403, 703, 1005
NlaIV	GGNNCC	3 cut(s)	321, 739, 740
NmuCI	GTSAC	2 cut(s)	636, 1261
NsiI	ATGCAT	2 cut(s)	598, 1003
NspI	RCATGY	1 cut(s)	1005
PaeR7I	CTCGAG	1 cut(s)	753
PagI	TCATGA	1 cut(s)	699
PceI	AGGCCT	1 cut(s)	708
PctI	GAATGC	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	3 cut(s)	179, 335, 403
PkrI	GCNGC	4 cut(s)	259, 688, 1104, 1127
PpuMI	RGGWCCY	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	532
Psp5II	RGGWCCY	1 cut(s)	738
Psp6I	CCWGG	3 cut(s)	182, 1033, 1063
PspGI	CCWGG	3 cut(s)	182, 1033, 1063
PspN4I	GGNNCC	3 cut(s)	321, 739, 740
PspPI	GGNCC	3 cut(s)	396, 665, 738
PspPPI	RGGWCCY	1 cut(s)	738
PstI	CTGCAG	2 cut(s)	691, 1184
PstNI	CAGNNNCTG	1 cut(s)	1220
PsuI	RGATCY	2 cut(s)	757, 1040
PvuII	CAGCTG	1 cut(s)	1125
RsaI	GTAC	3 cut(s)	554, 872, 929
RsaNI	GTAC	3 cut(s)	553, 871, 928
SacI	GAGCTC	1 cut(s)	532
SaqAI	TTAA	5 cut(s)	102, 591, 995, 1086, 1161
SatI	GCNGC	4 cut(s)	258, 687, 1103, 1126
Sau3AI	GATC	4 cut(s)	757, 799, 1040, 1149
Sau96I	GGNCC	3 cut(s)	396, 665, 738
ScrFI	CCNGG	3 cut(s)	184, 1035, 1065
SduI	GDGCHC	2 cut(s)	532, 1027
SfcI	CTRYAG	3 cut(s)	654, 687, 1180
Sfr274I	CTCGAG	1 cut(s)	753
SinI	GGWCC	3 cut(s)	396, 665, 738
SlaI	CTCGAG	1 cut(s)	753
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
Sse9I	AATT	3 cut(s)	233, 731, 823
SseBI	AGGCCT	1 cut(s)	708
SsiI	CCGC	1 cut(s)	718
SspMI	CTAG	4 cut(s)	354, 467, 1259, 1297
SstI	GAGCTC	1 cut(s)	532
StuI	AGGCCT	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	182, 1033, 1063
StyI	CCWWGG	2 cut(s)	889, 1141
TaaI	ACNGT	7 cut(s)	542, 607, 875, 985, 1029, 1159, 1222
TaiI	ACGT	3 cut(s)	123, 309, 419
TaqI	TCGA	2 cut(s)	173, 754
TasI	AATT	3 cut(s)	233, 731, 823
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	179, 335, 403
Tru1I	TTAA	5 cut(s)	102, 591, 995, 1086, 1161
Tru9I	TTAA	5 cut(s)	102, 591, 995, 1086, 1161
TscAI	CASTG	3 cut(s)	823, 1032, 1250
TseFI	GTSAC	2 cut(s)	636, 1261
TseI	GCWGC	4 cut(s)	257, 686, 1102, 1125
Tsp45I	GTSAC	2 cut(s)	636, 1261
TspDTI	ATGAA	8 cut(s)	32, 219, 669, 688, 716, 728, 810, 1214
TspRI	CASTG	3 cut(s)	823, 1032, 1250
VneI	GTGCAC	1 cut(s)	1023
VpaK11BI	GGWCC	3 cut(s)	396, 665, 738
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	1 cut(s)	1005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XhoI	CTCGAG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	4 cut(s)	354, 467, 1259, 1297
Zsp2I	ATGCAT	2 cut(s)	598, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.