AT5G58740

nudC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013389
Physical Location & Seq
Reverse (-)
23725675 .. 23727628
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58740.1

Sequence Viewer

Length: 477 bp
ATGGCGGAGAAGCTTGCGCCAGAGAAGAGACACGATTTCATTCACAATGGTCAAAAGGTATTTGAGTGGGATCAAACCCTGGAAGAAGTGAACATGTACATAACTTTGCCGCCAAATGTTCATCCAAAGTCATTCCACTGCAAAATCCAGTCGAAACATATCGAAGTTGGCATCAAAGGCAACCCTCCCTATCTCAATCACGATCTTAGTGCTCCTGTGAAGACTGATTGCTCGTTCTGGACTCTAGAGGATGATATAATGCACATTACCCTGCAGAAGAGGGAGAAAGGGCAAACATGGGCATCACCGATTCTGGGACAGGGTCAGTTAGATCCTTACGCCACTGATCTTGAGCAGAAGCGGCTCATGCTCCAGAGGTTTCAAGAAGAGAACCCGGGATTCGACTTCTCGCAAGCTCAGTTCTCGGGTAATTGTCCAGATCCAAGGAGCTTCATGGGCGGTATTCGTTCTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CS

Protein Analysis

158

Amino Acids

18.21

Weight (kDa)

5.78

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 21 - 93 2.3e-21 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58740
fragaria_vesca FvH4_3g38540
malus_domestica MD03G1070800.v1.1 MD11G1074800.v1.1
prunus_persica Prupe.6G057600_v2.0.a1 Prupe.6G057600_v2.0.a1
pyrus_communis pycom03g05710
rosa_chinensis RchiOBHm_Chr5g0069441
rosa_laevigata RLG00000036053
rosa_multiflora Rmu_sc0002658.1_g000032 Rmu_sc0019422.1_g000002
rosa_roxburghii Rroxscaffold_1G00011510
rosa_rugosa Rorug05G0397600
rosa_samantha Rh5AG454900 Rh5BG473900 Rh5CG496300 Rh5DG485700
rosa_wichuraiana Rw5G042430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 110, 361, 459
AclWI GGATC 3 cut(s) 78, 326, 434
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 3 cut(s) 13, 416, 450
AluI AGCT 3 cut(s) 13, 416, 450
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 3 cut(s) 78, 326, 434
Ama87I CYCGRG 2 cut(s) 394, 424
AspLEI GCGC 1 cut(s) 19
AsuC2I CCSGG 2 cut(s) 395, 396
AsuHPI GGTGA 1 cut(s) 297
AvaI CYCGRG 2 cut(s) 394, 424
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 80
BcnI CCSGG 2 cut(s) 395, 396
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 272
BisI GCNGC 2 cut(s) 110, 362
BlsI GCNGC 2 cut(s) 111, 363
Bme1390I CCNGG 3 cut(s) 80, 395, 396
BmeT110I CYCGRG 2 cut(s) 394, 424
BmrFI CCNGG 3 cut(s) 80, 395, 396
BmsI GCATC 2 cut(s) 180, 311
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 395, 396
BsaJI CCNNGG 3 cut(s) 78, 394, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 3 cut(s) 78, 394, 443
BseGI GGATG 2 cut(s) 121, 256
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 214
BsiHKCI CYCGRG 2 cut(s) 394, 424
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 330
BsoBI CYCGRG 2 cut(s) 394, 424
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 70, 202, 331, 346, 439
BspACI CCGC 4 cut(s) 5, 110, 361, 459
BspCNI CTCAG 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 3 cut(s) 78, 326, 434
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 3 cut(s) 78, 394, 443
BssMI GATC 5 cut(s) 70, 202, 331, 346, 439
BssT1I CCWWGG 1 cut(s) 443
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 3 cut(s) 20, 272, 381
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 15, 414
BstDEI CTNAG 2 cut(s) 206, 417
BstF5I GGATG 2 cut(s) 121, 256
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 5 cut(s) 73, 205, 334, 349, 442
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 5 cut(s) 70, 202, 331, 346, 439
BstMWI GCNNNNNNNGC 4 cut(s) 177, 361, 367, 456
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 3 cut(s) 78, 393, 394
BstSFI CTRYAG 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 331, 439
BstYI RGATCY 2 cut(s) 331, 439
BtsCI GGATG 2 cut(s) 121, 256
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 342
Cac8I GCNNGC 2 cut(s) 15, 414
CfoI GCGC 1 cut(s) 19
Cfr9I CCCGGG 1 cut(s) 394
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 94, 297, 367, 454
CviJI RGCY 4 cut(s) 13, 364, 416, 450
CviKI_1 RGCY 4 cut(s) 13, 364, 416, 450
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 206, 417
DpnI GATC 5 cut(s) 72, 204, 333, 348, 441
DpnII GATC 5 cut(s) 70, 202, 331, 346, 439
Eam1104I CTCTTC 3 cut(s) 20, 272, 381
EarI CTCTTC 3 cut(s) 20, 272, 381
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 443
Eco88I CYCGRG 2 cut(s) 394, 424
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 4 cut(s) 97, 300, 370, 457
FaiI YATR 7 cut(s) 95, 101, 159, 257, 298, 368, 455
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 93, 296, 366, 453
Fnu4HI GCNGC 2 cut(s) 110, 362
FokI GGATG 2 cut(s) 108, 263
Fsp4HI GCNGC 2 cut(s) 110, 362
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 110, 362
GsuI CTGGAG 1 cut(s) 356
HapII CCGG 1 cut(s) 395
HhaI GCGC 1 cut(s) 19
Hin1II CATG 4 cut(s) 97, 300, 370, 457
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 241, 310, 399
HpaII CCGG 1 cut(s) 395
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 7 cut(s) 200, 238, 245, 350, 373, 383, 437
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 141, 262, 274
HpyF10VI GCNNNNNNNGC 4 cut(s) 177, 361, 367, 456
HpyF3I CTNAG 2 cut(s) 206, 417
Hsp92II CATG 4 cut(s) 97, 300, 370, 457
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 5 cut(s) 70, 202, 331, 346, 439
LmnI GCTCC 3 cut(s) 217, 375, 447
LweI GCATC 2 cut(s) 180, 311
MaeI CTAG 1 cut(s) 245
MalI GATC 5 cut(s) 72, 204, 333, 348, 441
MboI GATC 5 cut(s) 70, 202, 331, 346, 439
MboII GAAGA 5 cut(s) 37, 95, 232, 289, 398
MflI RGATCY 2 cut(s) 331, 439
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 430
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 4 cut(s) 195, 241, 273, 369
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 80, 395, 396
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 4 cut(s) 177, 361, 367, 456
NciI CCSGG 2 cut(s) 395, 396
NdeII GATC 5 cut(s) 70, 202, 331, 346, 439
NlaIII CATG 4 cut(s) 97, 300, 370, 457
NspI RCATGY 1 cut(s) 97
PciI ACATGT 1 cut(s) 93
PfeI GAWTC 2 cut(s) 310, 399
PflFI GACNNNGTC 1 cut(s) 321
PkrI GCNGC 2 cut(s) 111, 363
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PscI ACATGT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 2 cut(s) 331, 439
PsyI GACNNNGTC 1 cut(s) 321
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SatI GCNGC 2 cut(s) 110, 362
Sau3AI GATC 5 cut(s) 70, 202, 331, 346, 439
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 3 cut(s) 80, 395, 396
SduI GDGCHC 1 cut(s) 214
SetI ASST 5 cut(s) 15, 60, 380, 418, 452
SfaNI GCATC 2 cut(s) 180, 311
SfcI CTRYAG 1 cut(s) 272
SmaI CCCGGG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 430
SsiI CCGC 4 cut(s) 5, 110, 361, 459
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 3 cut(s) 78, 393, 394
StyI CCWWGG 1 cut(s) 443
TaqI TCGA 3 cut(s) 152, 162, 402
TasI AATT 1 cut(s) 430
TatI WGTACW 1 cut(s) 96
TauI GCSGC 2 cut(s) 112, 364
TfiI GAWTC 2 cut(s) 310, 399
TscAI CASTG 2 cut(s) 143, 349
TspDTI ATGAA 3 cut(s) 28, 110, 442
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 2 cut(s) 143, 349
Tth111I GACNNNGTC 1 cut(s) 321
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 97
XmaI CCCGGG 1 cut(s) 394
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.