MD03G1070800.v1.1

nudC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0013389
Physical Location & Seq
Reverse (-)
5781114 .. 5782824
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1070800.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGCCGAGAAATTGGCACCGGAGAAGCGCCATAGCTTCGTTCACAATGGTCAGAAAGTGTTTGAATGGGATCAAACCCTAGAGGAGGTAAATATGTACATAAGTTTACCCCTAAATGTTCCTTCAAAGCATTTTTTCTGCAAAATTCAGTCGAAACACGTTGAAGTCGGCATCAAAGGCAATCCTCCGTACCTCAATCATGACCTTACTTGCCCGGTGAAGACGGACTGTTCTTTCTGGACACTAGAGGATGATATAATGCACATAACACTGCAAAAGAGGGACAAAGGTCAGACATGGGCATCACCTATAGTGGGCGAGGGTCAGCTCGATCCTTACTCCACGGATCTTGAACAGAAGCGCCTTATGCTGCAGAGATTTCAAGAAGAGAACCCGGGGTTTGATTTCTCACACGCCCAGTTCACCGGAGGCTGCCCTGATCCAAGGACCTTTATGGGCGGTATCCGCTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CS

Protein Analysis

159

Amino Acids

18.18

Weight (kDa)

5.78

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 21 - 93 2.3e-18 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58740
fragaria_vesca FvH4_3g38540
malus_domestica MD03G1070800.v1.1 MD11G1074800.v1.1
prunus_persica Prupe.6G057600_v2.0.a1 Prupe.6G057600_v2.0.a1
pyrus_communis pycom03g05710
rosa_chinensis RchiOBHm_Chr5g0069441
rosa_laevigata RLG00000036053
rosa_multiflora Rmu_sc0002658.1_g000032 Rmu_sc0019422.1_g000002
rosa_roxburghii Rroxscaffold_1G00011510
rosa_rugosa Rorug05G0397600
rosa_samantha Rh5AG454900 Rh5BG473900 Rh5CG496300 Rh5DG485700
rosa_wichuraiana Rw5G042430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 16
AccBSI CCGCTC 1 cut(s) 468
AciI CCGC 2 cut(s) 459, 466
AclWI GGATC 4 cut(s) 78, 326, 354, 434
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 2 cut(s) 98, 191
AfiI CCNNNNNNNGG 2 cut(s) 85, 314
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 5 cut(s) 65, 126, 164, 353, 383
AluBI AGCT 2 cut(s) 36, 328
AluI AGCT 2 cut(s) 36, 328
AlwI GGATC 4 cut(s) 78, 326, 354, 434
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 370, 432
ApoI RAATTY 1 cut(s) 144
AspLEI GCGC 2 cut(s) 30, 363
AspS9I GGNCC 1 cut(s) 447
AsuC2I CCSGG 3 cut(s) 215, 395, 396
AsuHPI GGTGA 3 cut(s) 229, 297, 415
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 357, 419
BciVI GTATCC 1 cut(s) 473
BcnI CCSGG 3 cut(s) 215, 395, 396
BfaI CTAG 2 cut(s) 80, 245
BfmI CTRYAG 2 cut(s) 309, 371
BfoI RGCGCY 2 cut(s) 31, 364
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 2 cut(s) 371, 433
BlsI GCNGC 2 cut(s) 372, 434
Bme1390I CCNGG 3 cut(s) 215, 395, 396
Bme18I GGWCC 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 447
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 3 cut(s) 215, 395, 396
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 2 cut(s) 180, 311
BmuI ACTGGG 1 cut(s) 412
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 227
BpuMI CCSGG 3 cut(s) 215, 395, 396
BsaJI CCNNGG 4 cut(s) 342, 394, 395, 443
BsaWI WCCGGW 2 cut(s) 19, 425
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 314
Bse1I ACTGG 1 cut(s) 418
BseDI CCNNGG 4 cut(s) 342, 394, 395, 443
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 2 cut(s) 85, 314
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 357, 419
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 4 cut(s) 20, 215, 395, 426
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 85, 314
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 394
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 4 cut(s) 70, 331, 346, 439
BspACI CCGC 2 cut(s) 459, 466
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 4 cut(s) 78, 326, 354, 434
BspT107I GGYRCC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 4 cut(s) 342, 394, 395, 443
BssMI GATC 4 cut(s) 70, 331, 346, 439
BssT1I CCWWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 256
BstH2I RGCGCY 2 cut(s) 31, 364
BstHHI GCGC 2 cut(s) 30, 363
BstKTI GATC 4 cut(s) 73, 334, 349, 442
BstMBI GATC 4 cut(s) 70, 331, 346, 439
BstMWI GCNNNNNNNGC 3 cut(s) 177, 367, 465
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 213, 393, 394
BstSFI CTRYAG 2 cut(s) 309, 371
BstV1I GCAGC 2 cut(s) 357, 419
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 30, 363
Cfr13I GGNCC 1 cut(s) 447
Cfr9I CCCGGG 1 cut(s) 394
Csp6I GTAC 2 cut(s) 97, 190
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 2 cut(s) 200, 297
CviJI RGCY 4 cut(s) 5, 36, 328, 432
CviKI_1 RGCY 4 cut(s) 5, 36, 328, 432
CviQI GTAC 2 cut(s) 97, 190
DpnI GATC 4 cut(s) 72, 333, 348, 441
DpnII GATC 4 cut(s) 70, 331, 346, 439
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 2 cut(s) 203, 300
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 199, 296
Fnu4HI GCNGC 2 cut(s) 371, 433
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 371, 433
FspBI CTAG 2 cut(s) 80, 245
GlaI GCGC 2 cut(s) 29, 362
GluI GCNGC 2 cut(s) 371, 433
HaeII RGCGCY 2 cut(s) 31, 364
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 20, 215, 395, 426
HhaI GCGC 2 cut(s) 30, 363
Hin1II CATG 2 cut(s) 203, 300
Hin6I GCGC 2 cut(s) 28, 361
HinP1I GCGC 2 cut(s) 28, 361
HpaII CCGG 4 cut(s) 20, 215, 395, 426
HphI GGTGA 3 cut(s) 229, 297, 415
Hpy166II GTNNAC 3 cut(s) 43, 107, 423
Hpy188I TCNGA 3 cut(s) 54, 294, 472
Hpy188III TCNNGA 4 cut(s) 200, 238, 350, 383
Hpy8I GTNNAC 3 cut(s) 43, 107, 423
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 4 cut(s) 141, 262, 274, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 367, 465
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 2 cut(s) 203, 300
HspAI GCGC 2 cut(s) 28, 361
Kzo9I GATC 4 cut(s) 70, 331, 346, 439
LpnPI CCDG 7 cut(s) 33, 223, 228, 408, 431, 439, 450
Lsp1109I GCAGC 2 cut(s) 357, 419
LweI GCATC 2 cut(s) 180, 311
MaeI CTAG 2 cut(s) 80, 245
MaeII ACGT 1 cut(s) 159
MalI GATC 4 cut(s) 72, 333, 348, 441
MbiI CCGCTC 1 cut(s) 468
MboI GATC 4 cut(s) 70, 331, 346, 439
MboII GAAGA 2 cut(s) 232, 398
MflI RGATCY 1 cut(s) 346
MluCI AATT 2 cut(s) 11, 144
MnlI CCTC 8 cut(s) 76, 79, 195, 203, 241, 273, 313, 422
MspI CCGG 4 cut(s) 20, 215, 395, 426
MspR9I CCNGG 3 cut(s) 215, 395, 396
MwoI GCNNNNNNNGC 3 cut(s) 177, 367, 465
NciI CCSGG 3 cut(s) 215, 395, 396
NdeII GATC 4 cut(s) 70, 331, 346, 439
NlaIII CATG 2 cut(s) 203, 300
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 31
PagI TCATGA 1 cut(s) 199
PkrI GCNGC 2 cut(s) 372, 434
PpuMI RGGWCCY 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 447
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 447
PspPPI RGGWCCY 1 cut(s) 447
PstI CTGCAG 1 cut(s) 375
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 2 cut(s) 98, 191
RsaNI GTAC 2 cut(s) 97, 190
SatI GCNGC 2 cut(s) 371, 433
Sau3AI GATC 4 cut(s) 70, 331, 346, 439
Sau96I GGNCC 1 cut(s) 447
ScrFI CCNGG 3 cut(s) 215, 395, 396
SetI ASST 9 cut(s) 38, 90, 162, 195, 207, 292, 310, 330, 452
SfaNI GCATC 2 cut(s) 180, 311
SfcI CTRYAG 2 cut(s) 309, 371
SinI GGWCC 1 cut(s) 447
SmaI CCCGGG 1 cut(s) 396
Sse9I AATT 2 cut(s) 11, 144
SsiI CCGC 2 cut(s) 459, 466
SspMI CTAG 2 cut(s) 80, 245
StyD4I CCNGG 3 cut(s) 213, 393, 394
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 152, 330
TasI AATT 2 cut(s) 11, 144
TatI WGTACW 1 cut(s) 96
TscAI CASTG 1 cut(s) 276
TseI GCWGC 2 cut(s) 370, 432
TspGWI ACGGA 3 cut(s) 177, 239, 359
TspMI CCCGGG 1 cut(s) 394
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 1 cut(s) 144
XmaI CCCGGG 1 cut(s) 394
XspI CTAG 2 cut(s) 80, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.