FvH4_3g38540

nudC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013389
Physical Location & Seq
Forward (+)
32892614 .. 32894467
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38540.t1

Sequence Viewer

Length: 477 bp
ATGGCCGAGAAATTGGCTCCGGAGAAGCGCCATAGCTTCATCCACAACGGTCAAAAGGTATTCGAATGGGACCAAACCCTAGAGGAAGTGAACATGTACATCACTCTACCCCCAAATGTTCCTCCGAAGCAATTCTACTGCAAGCTTCAGTCCAAGCACGTCGAAGTCGGCATCAAAGGAAACCCTCCATATCTCAATCATGATCTTACTAGCCCTGTGAAGACGGACTGTTCTTTTTGGACACTAGAGGATGATATAATGCACATAACACTGCAAAAGAGGGACAAAGGTCAGACATGGGCTTCCCCTATAGTGGGTGATTGCCAGCTGGATCCTTACGCCACCGATCTTGAACAGAAGCGCCTTATGCTTCAGAGGTTTCAAGAAGAGAACCCTGGTTTTGACTTTTCACAAGCTCAGTTCAATGGGGGATGCCCTGATCCACGTACGTTCATGGGTGGTATCCGCTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CS

Protein Analysis

159

Amino Acids

18.22

Weight (kDa)

5.51

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 21 - 93 7e-20 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013389)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58740
fragaria_vesca FvH4_3g38540
malus_domestica MD03G1070800.v1.1 MD11G1074800.v1.1
prunus_persica Prupe.6G057600_v2.0.a1 Prupe.6G057600_v2.0.a1
pyrus_communis pycom03g05710
rosa_chinensis RchiOBHm_Chr5g0069441
rosa_laevigata RLG00000036053
rosa_multiflora Rmu_sc0002658.1_g000032 Rmu_sc0019422.1_g000002
rosa_roxburghii Rroxscaffold_1G00011510
rosa_rugosa Rorug05G0397600
rosa_samantha Rh5AG454900 Rh5BG473900 Rh5CG496300 Rh5DG485700
rosa_wichuraiana Rw5G042430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 468
AccIII TCCGGA 1 cut(s) 19
AciI CCGC 1 cut(s) 466
AclWI GGATC 3 cut(s) 326, 339, 434
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 131, 356
AfaI GTAC 2 cut(s) 98, 448
AfiI CCNNNNNNNGG 2 cut(s) 313, 314
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 3 cut(s) 353, 383, 424
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 4 cut(s) 36, 145, 328, 416
AluI AGCT 4 cut(s) 36, 145, 328, 416
AlwI GGATC 3 cut(s) 326, 339, 434
Aor13HI TCCGGA 1 cut(s) 19
AoxI GGCC 1 cut(s) 3
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 30, 363
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 329
AsuII TTCGAA 1 cut(s) 63
AvaII GGWCC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 331
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
BbsI GAAGAC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 396
BciVI GTATCC 1 cut(s) 473
BfaI CTAG 3 cut(s) 80, 210, 245
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 2 cut(s) 31, 364
BfuI GTATCC 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 18, 71, 333
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 2 cut(s) 180, 422
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 314
BseAI TCCGGA 1 cut(s) 19
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 394
BseGI GGATG 3 cut(s) 39, 256, 437
BseLI CCNNNNNNNGG 2 cut(s) 313, 314
BseMII CTCAG 1 cut(s) 431
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 20
BsiWI CGTACG 1 cut(s) 446
BslFI GGGAC 2 cut(s) 83, 296
BslI CCNNNNNNNGG 2 cut(s) 313, 314
BsmFI GGGAC 2 cut(s) 83, 296
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 63
Bsp13I TCCGGA 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 4 cut(s) 202, 331, 346, 439
BspACI CCGC 1 cut(s) 466
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 430
BspEI TCCGGA 1 cut(s) 19
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 18, 71, 333
BspPI GGATC 3 cut(s) 326, 339, 434
BspT104I TTCGAA 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 4 cut(s) 202, 331, 346, 439
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 50, 230
Bst6I CTCTTC 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 143, 326
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 39, 256, 437
BstH2I RGCGCY 2 cut(s) 31, 364
BstHHI GCGC 2 cut(s) 30, 363
BstKTI GATC 4 cut(s) 205, 334, 349, 442
BstMBI GATC 4 cut(s) 202, 331, 346, 439
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 97
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 309
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 3 cut(s) 39, 256, 437
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 143, 326
CciI TCATGA 1 cut(s) 199
CfoI GCGC 2 cut(s) 30, 363
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 97, 447
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 94, 200, 297, 454
CviJI RGCY 8 cut(s) 5, 17, 36, 145, 213, 302, 328, 416
CviKI_1 RGCY 8 cut(s) 5, 17, 36, 145, 213, 302, 328, 416
CviQI GTAC 2 cut(s) 97, 447
DdeI CTNAG 1 cut(s) 417
DpnI GATC 4 cut(s) 204, 333, 348, 441
DpnII GATC 4 cut(s) 202, 331, 346, 439
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 2 cut(s) 131, 356
EcoRII CCWGG 1 cut(s) 394
FaeI CATG 4 cut(s) 97, 203, 300, 457
FaqI GGGAC 2 cut(s) 83, 296
FatI CATG 4 cut(s) 93, 199, 296, 453
FokI GGATG 3 cut(s) 26, 263, 444
FspBI CTAG 3 cut(s) 80, 210, 245
GlaI GCGC 2 cut(s) 29, 362
HaeII RGCGCY 2 cut(s) 31, 364
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 30, 363
Hin1II CATG 4 cut(s) 97, 203, 300, 457
Hin6I GCGC 2 cut(s) 28, 361
HinP1I GCGC 2 cut(s) 28, 361
HindIII AAGCTT 1 cut(s) 143
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 126, 294, 375, 472
Hpy188III TCNNGA 4 cut(s) 20, 200, 350, 383
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 50, 230
HpyCH4IV ACGT 3 cut(s) 159, 445, 449
HpyCH4V TGCA 3 cut(s) 141, 262, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 3 cut(s) 159, 445, 449
Hsp92II CATG 4 cut(s) 97, 203, 300, 457
HspAI GCGC 2 cut(s) 28, 361
Kpn2I TCCGGA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 202, 331, 346, 439
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 33, 228, 314, 338, 381, 408, 450
LweI GCATC 2 cut(s) 180, 422
MaeI CTAG 3 cut(s) 80, 210, 245
MaeII ACGT 3 cut(s) 159, 445, 449
MalI GATC 4 cut(s) 204, 333, 348, 441
MbiI CCGCTC 1 cut(s) 468
MboI GATC 4 cut(s) 202, 331, 346, 439
MboII GAAGA 2 cut(s) 232, 398
MflI RGATCY 1 cut(s) 331
MluCI AATT 2 cut(s) 11, 131
MnlI CCTC 6 cut(s) 76, 132, 195, 241, 273, 369
MroI TCCGGA 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 4 cut(s) 202, 331, 346, 439
NlaIII CATG 4 cut(s) 97, 203, 300, 457
NlaIV GGNNCC 3 cut(s) 18, 71, 333
NmeAIII GCCGAG 1 cut(s) 31
NspI RCATGY 1 cut(s) 97
NspV TTCGAA 1 cut(s) 63
PagI TCATGA 1 cut(s) 199
PciI ACATGT 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 131
Pfl23II CGTACG 1 cut(s) 446
Ppu21I YACGTR 1 cut(s) 446
PscI ACATGT 1 cut(s) 93
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspLI CGTACG 1 cut(s) 446
PspN4I GGNNCC 3 cut(s) 18, 71, 333
PspPI GGNCC 1 cut(s) 70
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 2 cut(s) 98, 448
RsaNI GTAC 2 cut(s) 97, 447
Sau3AI GATC 4 cut(s) 202, 331, 346, 439
Sau96I GGNCC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 2 cut(s) 180, 422
SfcI CTRYAG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 1 cut(s) 70
Sse9I AATT 2 cut(s) 11, 131
SsiI CCGC 1 cut(s) 466
SspMI CTAG 3 cut(s) 80, 210, 245
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 2 cut(s) 50, 230
TaiI ACGT 3 cut(s) 162, 448, 452
TaqI TCGA 2 cut(s) 63, 162
TasI AATT 2 cut(s) 11, 131
TatI WGTACW 1 cut(s) 96
TscAI CASTG 1 cut(s) 276
TspDTI ATGAA 2 cut(s) 28, 442
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 3 cut(s) 80, 210, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.