Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0022046

Physical Location & Seq

Genomic Coordinates Reverse (-)

24671770 .. 24673657

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGATGTCCACCACAGTCAGATTAAACAGGTTTACGTATCTAACGAGTACTGCAAAACTGACACGTTACTTTTGCTCTCACCATTTAGTTGACCGATCGGAAACGGCGTTGCATGAAGTTATTCGGATAGTTTCTTCTCCAGTTGGTGGTCTAGATGACCTTGAAGAAAACTTGAACCAGGTTTCTGTTTCTCCATCATCAAACCTTGTTACCCAAGTGATTGAGTCTTGCAAGAACGAGACTTCACCGAGAAGGCTGTTGAGGTTTTTCTCCTGGTCGTGTAAAAGCTTGGGATCTAGTTTACACGACAAGGAATTCAACTATGTCCTAAGAGTTTTGGCTGAGAAGAAGGATCACACAGCTATGCAGATACTCTTATCAGATCTCAGGAAGGAGAATCGGGCGATGGACAAGCAAACGTTTAGCATTGTCGCTGAAACTCTGGTTAAGGTTGGTAAGGAAGAAGATGCAATAGGTATCTTCAAGATCTTGGACAAATTTTCTTGCCCACAAGATGGTTTCACTGTGACGGCTATTATAAGCGCTCTTTGTTCCAGAGGACATGTGAAGAGAGCATTGGGAGTTATGCATCATCACAAGGATGTAATATCCGGGAATGAATTGTCTGTGTATAGAAGTCTTTTATTCGGGTGGTCGGTACAAAGAAACGTGAAGGAAGCAAGAAGAGTTATACAAGATATGAAATCAGCAGGGATTACACCGGATTTGTTCTGTTTCAACTCGTTGCTGACCTGCCTTTGCGAAAGAAACGTGAATCGAAACCCGTCTGGGCTTGTTCCTGAAGCTTTGAATATTATGTTGGAGATGAGGTCTTACAAAATCCAACCTACGTCTATGAGTTACAACATTTTGCTCTCTTGTTTGGGAAGGACTAGGAGGGTGAGAGAGTCCTGCCAGATTTTAGAACAGATGAAAAGATCGGGATGTGATCCGGATACAGGGAGCTATTACTTCGTTGTGAGGGTCCTGTATTTGACAGGAAGGTTTGGTAAAGGCAACCAAATTGTGGATGAGATGATCGAGAGAGGATTTAGACCCGAACGCAAATTCTATTATGATCTGATCGGGGTTCTTTGTGGGGTCGAGCGGGTTAACTTTGCTCTTCAATTGTTTGAGAAGATGAAGAGAAGCTCAGTGGGTGGTTATGGTCAGGTTTATGATCTGCTCATACCAAAACTATGTAAAGGAGGAAACTTTGAGAAAGGAAGAGAGCTTTGGGAAGAGGCATTGTCAATTGATGTTACACTTAGTTGCTCCATTAGTTTGCTTGATCCATCTGTCACAGAGGTTTTCAAACCTATGAAGATGAAAGAAGAAGCTGCAATGGTGGATCGTCGTGCTCTTAACTTGAAGATTCACGCTAGAATGAACAAAACAAAGCCAAAACTGAAACTAAAACCGAAACGCAGGAGCAAGACAAAGAAGAAGAATCTGCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

487

Amino Acids

55.55

Weight (kDa)

9.53

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	211 - 254	3.9e-07	PPR repeat family
PPR_2	PF13041	283 - 326	6.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61370
malus_domestica	MD06G1197500.v1.1
prunus_persica	Prupe.5G198200_v2.0.a1
pyrus_communis	pycom06g17450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	761
AccB7I	CCANNNNNTGG	3 cut(s)	146, 515, 1027
AccBSI	CCGCTC	1 cut(s)	1108
AccIII	TCCGGA	1 cut(s)	952
AciI	CCGC	1 cut(s)	1108
AclI	AACGTT	1 cut(s)	419
AclWI	GGATC	5 cut(s)	301, 360, 944, 1286, 1359
AcsI	RAATTY	3 cut(s)	314, 497, 1067
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	49, 660
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	4 cut(s)	146, 515, 959, 1027
AflIII	ACRYGT	2 cut(s)	62, 562
AgsI	TTSAA	9 cut(s)	164, 175, 319, 484, 739, 811, 1127, 1315, 1372
AjnI	CCWGG	2 cut(s)	177, 272
AjuI	GAANNNNNNNTTGG	6 cut(s)	560, 592, 803, 835, 1219, 1251
AluBI	AGCT	7 cut(s)	288, 362, 806, 966, 1152, 1234, 1340
AluI	AGCT	7 cut(s)	288, 362, 806, 966, 1152, 1234, 1340
Alw21I	GWGCWC	1 cut(s)	1363
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	5 cut(s)	301, 360, 944, 1286, 1359
Aor13HI	TCCGGA	1 cut(s)	952
Aor51HI	AGCGCT	1 cut(s)	544
ApeKI	GCWGC	1 cut(s)	1340
ApoI	RAATTY	3 cut(s)	314, 497, 1067
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	985
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	3 cut(s)	71, 237, 913
AvaII	GGWCC	1 cut(s)	985
Bbv12I	GWGCWC	1 cut(s)	1363
BbvI	GCAGC	1 cut(s)	1327
BccI	CCATC	4 cut(s)	202, 400, 509, 1303
BceAI	ACGGC	2 cut(s)	120, 546
BciT130I	CCWGG	2 cut(s)	179, 274
BciVI	GTATCC	1 cut(s)	949
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	4 cut(s)	152, 297, 894, 1383
BfoI	RGCGCY	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	761
BfuI	GTATCC	1 cut(s)	949
BglII	AGATCT	2 cut(s)	382, 486
BisI	GCNGC	1 cut(s)	1341
BlsI	GCNGC	1 cut(s)	1342
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	179, 274, 613
Bme18I	GGWCC	1 cut(s)	985
BmgT120I	GGNCC	1 cut(s)	985
BmiI	GGNNCC	1 cut(s)	986
BmrFI	CCNGG	3 cut(s)	179, 274, 613
BmsI	GCATC	2 cut(s)	457, 598
BpmI	CTGGAG	1 cut(s)	123
BpuMI	CCSGG	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	36
BsaWI	WCCGGW	2 cut(s)	721, 952
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 515, 959, 1027
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	1350
BseAI	TCCGGA	1 cut(s)	952
BseBI	CCWGG	2 cut(s)	179, 274
BseGI	GGATG	3 cut(s)	607, 950, 1036
BseLI	CCNNNNNNNGG	4 cut(s)	146, 515, 959, 1027
BseMI	GCAATG	1 cut(s)	1350
BseMII	CTCAG	3 cut(s)	333, 400, 1167
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	1327
Bsh1285I	CGRYCG	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	1363
BsiSI	CCGG	3 cut(s)	612, 722, 953
BslI	CCNNNNNNNGG	4 cut(s)	146, 515, 959, 1027
BsmAI	GTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	1363
Bsp13I	TCCGGA	1 cut(s)	952
BspACI	CCGC	1 cut(s)	1108
BspCNI	CTCAG	3 cut(s)	334, 399, 1166
BspEI	TCCGGA	1 cut(s)	952
BspLI	GGNNCC	1 cut(s)	986
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	5 cut(s)	301, 360, 944, 1286, 1359
BspQI	GCTCTTC	1 cut(s)	1128
BsrBI	CCGCTC	1 cut(s)	1108
BsrDI	GCAATG	1 cut(s)	1350
BsrI	ACTGG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	179, 274
Bst4CI	ACNGT	2 cut(s)	16, 526
Bst6I	CTCTTC	6 cut(s)	563, 679, 1128, 1139, 1222, 1236
BstBAI	YACGTR	1 cut(s)	36
BstDEI	CTNAG	5 cut(s)	329, 342, 386, 1153, 1268
BstF5I	GGATG	3 cut(s)	607, 950, 1036
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstMAI	GTCTC	1 cut(s)	233
BstMCI	CGRYCG	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	179, 274
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	177, 272, 611
BstSNI	TACGTA	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	1327
BstX2I	RGATCY	3 cut(s)	293, 382, 486
BstYI	RGATCY	3 cut(s)	293, 382, 486
BsuI	GTATCC	1 cut(s)	949
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	607, 950, 1036
BtsIMutI	CAGTG	2 cut(s)	522, 1161
BveI	ACCTGC	1 cut(s)	761
CfoI	GCGC	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	985
CsiI	ACCWGGT	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	48, 659
CviAII	CATG	2 cut(s)	113, 563
CviQI	GTAC	2 cut(s)	48, 659
DdeI	CTNAG	5 cut(s)	329, 342, 386, 1153, 1268
Eam1104I	CTCTTC	6 cut(s)	563, 679, 1128, 1139, 1222, 1236
EarI	CTCTTC	6 cut(s)	563, 679, 1128, 1139, 1222, 1236
Eco105I	TACGTA	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	985
Eco47III	AGCGCT	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	822
EcoO109I	RGGNCCY	1 cut(s)	985
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	177, 272
EcoT22I	ATGCAT	1 cut(s)	591
FaeI	CATG	2 cut(s)	116, 566
FatI	CATG	2 cut(s)	112, 562
FauI	CCCGC	1 cut(s)	1101
Fnu4HI	GCNGC	1 cut(s)	1341
FokI	GGATG	3 cut(s)	614, 957, 1043
Fsp4HI	GCNGC	1 cut(s)	1341
FspBI	CTAG	4 cut(s)	152, 297, 894, 1383
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	1341
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	546
HapII	CCGG	3 cut(s)	612, 722, 953
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	116, 566
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	2 cut(s)	91, 1114
HindII	GTYRAC	2 cut(s)	91, 1114
HindIII	AAGCTT	2 cut(s)	286, 804
HinfI	GANTC	6 cut(s)	224, 397, 775, 908, 1375, 1450
HpaI	GTTAAC	1 cut(s)	1114
HpaII	CCGG	3 cut(s)	612, 722, 953
HphI	GGTGA	3 cut(s)	71, 237, 913
Hpy166II	GTNNAC	5 cut(s)	9, 33, 91, 302, 1114
Hpy188I	TCNGA	5 cut(s)	20, 100, 126, 382, 1083
Hpy188III	TCNNGA	8 cut(s)	152, 388, 484, 555, 800, 942, 953, 1042
Hpy8I	GTNNAC	5 cut(s)	9, 33, 91, 302, 1114
Hpy99I	CGWCG	1 cut(s)	1359
HpyAV	CCTTC	6 cut(s)	246, 343, 385, 667, 882, 996
HpyCH4III	ACNGT	2 cut(s)	16, 526
HpyCH4IV	ACGT	6 cut(s)	35, 64, 419, 669, 771, 851
HpyCH4V	TGCA	8 cut(s)	53, 112, 231, 367, 470, 589, 1343, 1456
HpyF3I	CTNAG	5 cut(s)	329, 342, 386, 1153, 1268
HpySE526I	ACGT	6 cut(s)	35, 64, 419, 669, 771, 851
Hsp92II	CATG	2 cut(s)	116, 566
HspAI	GCGC	1 cut(s)	543
Kpn2I	TCCGGA	1 cut(s)	952
KspAI	GTTAAC	1 cut(s)	1114
LguI	GCTCTTC	1 cut(s)	1128
LmnI	GCTCC	3 cut(s)	963, 1280, 1431
Lsp1109I	GCAGC	1 cut(s)	1327
LweI	GCATC	2 cut(s)	457, 598
MabI	ACCWGGT	1 cut(s)	177
MaeI	CTAG	4 cut(s)	152, 297, 894, 1383
MaeII	ACGT	6 cut(s)	35, 64, 419, 669, 771, 851
MaeIII	GTNAC	6 cut(s)	65, 208, 526, 860, 1261, 1300
MbiI	CCGCTC	1 cut(s)	1108
MfeI	CAATTG	2 cut(s)	1127, 1254
MflI	RGATCY	3 cut(s)	293, 382, 486
MhlI	GDGCHC	1 cut(s)	1363
MluCI	AATT	7 cut(s)	314, 497, 620, 1023, 1067, 1127, 1254
MlyI	GAGTC	2 cut(s)	233, 917
MmeI	TCCRAC	2 cut(s)	801, 868
MnlI	CCTC	9 cut(s)	255, 551, 822, 891, 975, 1040, 1202, 1237, 1300
Mph1103I	ATGCAT	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	4 cut(s)	23, 447, 1113, 1365
MslI	CAYNNNNRTG	2 cut(s)	362, 600
MspI	CCGG	3 cut(s)	612, 722, 953
MspR9I	CCNGG	3 cut(s)	179, 274, 613
MunI	CAATTG	2 cut(s)	1127, 1254
MvaI	CCWGG	2 cut(s)	179, 274
NciI	CCSGG	1 cut(s)	613
NlaIII	CATG	2 cut(s)	116, 566
NlaIV	GGNNCC	1 cut(s)	986
NmuCI	GTSAC	2 cut(s)	526, 1300
NsiI	ATGCAT	1 cut(s)	591
NspI	RCATGY	1 cut(s)	566
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	1128
PcsI	WCGNNNNNNNCGW	2 cut(s)	41, 104
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	397, 775, 1375, 1450
PflMI	CCANNNNNTGG	3 cut(s)	146, 515, 1027
PfoI	TCCNGGA	1 cut(s)	611
PkrI	GCNGC	1 cut(s)	1342
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	2 cut(s)	232, 916
PpsI	GAGTC	2 cut(s)	232, 916
Ppu21I	YACGTR	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	985
PscI	ACATGT	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	539
Psp1406I	AACGTT	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	985
Psp6I	CCWGG	2 cut(s)	177, 272
PspGI	CCWGG	2 cut(s)	177, 272
PspN4I	GGNNCC	1 cut(s)	986
PspPI	GGNCC	1 cut(s)	985
PspPPI	RGGWCCY	1 cut(s)	985
PsuI	RGATCY	3 cut(s)	293, 382, 486
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	49, 660
RsaNI	GTAC	2 cut(s)	48, 659
RseI	CAYNNNNRTG	2 cut(s)	362, 600
SapI	GCTCTTC	1 cut(s)	1128
SaqAI	TTAA	4 cut(s)	23, 447, 1113, 1365
SatI	GCNGC	1 cut(s)	1341
Sau96I	GGNCC	1 cut(s)	985
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	2 cut(s)	233, 917
ScrFI	CCNGG	3 cut(s)	179, 274, 613
SduI	GDGCHC	1 cut(s)	1363
SexAI	ACCWGGT	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	457, 598
SinI	GGWCC	1 cut(s)	985
SmiMI	CAYNNNNRTG	2 cut(s)	362, 600
SnaBI	TACGTA	1 cut(s)	36
Sse9I	AATT	7 cut(s)	314, 497, 620, 1023, 1067, 1127, 1254
SsiI	CCGC	1 cut(s)	1108
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	4 cut(s)	152, 297, 894, 1383
StyD4I	CCNGG	3 cut(s)	177, 272, 611
TaaI	ACNGT	2 cut(s)	16, 526
TaiI	ACGT	6 cut(s)	38, 67, 422, 672, 774, 854
TaqI	TCGA	3 cut(s)	778, 1041, 1104
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	314, 497, 620, 1023, 1067, 1127, 1254
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	4 cut(s)	397, 775, 1375, 1450
Tru1I	TTAA	4 cut(s)	23, 447, 1113, 1365
Tru9I	TTAA	4 cut(s)	23, 447, 1113, 1365
TscAI	CASTG	2 cut(s)	529, 1161
TseFI	GTSAC	2 cut(s)	526, 1300
TseI	GCWGC	1 cut(s)	1340
Tsp45I	GTSAC	2 cut(s)	526, 1300
TspDTI	ATGAA	8 cut(s)	129, 633, 716, 947, 1157, 1337, 1343, 1403
TspRI	CASTG	2 cut(s)	529, 1161
Van91I	CCANNNNNTGG	3 cut(s)	146, 515, 1027
VpaK11BI	GGWCC	1 cut(s)	985
XapI	RAATTY	3 cut(s)	314, 497, 1067
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	4 cut(s)	152, 297, 894, 1383
ZrmI	AGTACT	1 cut(s)	49
Zsp2I	ATGCAT	1 cut(s)	591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.