pycom06g17450

Pentatricopeptide repeat-containing protein At5g61370

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
21416098 .. 21417591
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17450.1

Sequence Viewer

Length: 1494 bp
ATGCGTTCTGTATTTCTATCGAAATGGCAGAGGTTTTTGCTGCAAAATGCAGTCAGTAGTCAGAAATCTCAATGCTTTTCGTGTTTTTACTACTCTACCATGTTGCCTGCGTCTTCACCACCCGAGCTGCAGGAGCTGTGTACCATTGTTTCGAGTGCAATTGGCGGTCTGGATGATTTGGAATCGAGTCTAAATGAGTTTTCGGCTTCCTTAACATCGTTGCTTGTGACCCAAGTAATCGATTCTTGCAAAAGCGAAGCACCCACTAGAAGGTTGCTCAGGTTCTTCTCCTGGTGTCATAAGAATTTGGGTTATGGTTTGCAAGACAAGGACTATAACTATGGCATTCGGGTTTTCGCGGAGAAGAAGGACCACACGGCAATGAACATTGTACTCTCTGATCTTGTGAAGGCGGGCCGGGTGATGGAAGCTCAAACGTTTGGTCTTGTCACTGAGGCATTGGTCAAGTTGGGGAAGGAAGATGAGGCGTTGGGTATGTTTAAGAACTTGGACAAGTACAAGTGCCCTCAAGACGGTGTTACAGTCACTGCCATTGTCAATGCACTTTGCGCTCAAGGGCATGCTAAAAGAGCAGAAGGGGTTGTTTTGCACCACAGGGATAAGATTGCCGGTATAGAGCCTTGTATTTACAAGAGTCTTTTGTATGGATGGTCTGTGCAGGAGAATGTGAAGGAAGCAAGAAGAATCATCAAAGAAATGAAGTCGATTGGGATTATGCCAGACTTGTTTTGCTACAACACATTCCTTCGGGGCCTTTGCGAGAGAAACCTTAAGCTCAATCCATCTGGACTTGTTCCTGAAGCTTTAAATGTGATGATTGAGATGAGGTCTTATAGAATTTCTCCCAATTCCATTAGTTACAATATATTGCTTTCTTGTTTGGGAAGAACGAGAAGAGTCAAGGAATCTTGTAACATTCTTGAGACTATGAAGAAGACGGGTTGCTCTCCAGATTGCATTAGCTATTACCTTGTGGTAAGAGTGTTGTATTTGTCCGGAAGATTTGGTAAAGGAAATAAGATGGTGGACGAGATGCTTGAACAGGGCCTGCAACCGAATTGTAAGTTCTACAATGACTTGATTGGTGTACTTGTTGGCAAGGAGAGACCACATTTTGCTGTGGAGCTGCTTCAAAAGATGAAGGCAAGCGCATTAGGAGGTTATGGGTCGGTTTATGATGTGCTGATTCCCAAGTTTTGTAGGGGAGGGGACTTTGAAAAGGGTAGAGAGCTCTGGGATGAAGCCGTGGCTATGGGCGTCACTCTTCGCTGCTCGAGCAATTTGTTGGACCCCTCGATCACTGAGGTTTTCAAGCCAACAAGGAATAAGGAAAAACTCCGCCTTATAGAATGCGCCAATGCAAAGGCTGAAGAGAAAGTTAGAAGGAGGACGGGAAAGACAAAGCAGACGAAGAAGAAGAAGAAGATTCTAAGGAGGATGCTGAAGAAGAAAAAGAAATCTGCAGCAACTTAA

Protein Analysis

498

Amino Acids

56.02

Weight (kDa)

9.43

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 216 - 260 1.5e-07 PPR repeat family
PPR_2 PF13041 289 - 332 6.2e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61370
malus_domestica MD06G1197500.v1.1
prunus_persica Prupe.5G198200_v2.0.a1
pyrus_communis pycom06g17450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 1016
AciI CCGC 4 cut(s) 165, 359, 413, 1360
AclI AACGTT 1 cut(s) 437
AcsI RAATTY 2 cut(s) 304, 858
AcuI CTGAAG 3 cut(s) 840, 1410, 1484
AcyI GRCGYC 1 cut(s) 1278
AfaI GTAC 4 cut(s) 142, 393, 518, 1110
AfiI CCNNNNNNNGG 3 cut(s) 270, 424, 533
AflII CTTAAG 1 cut(s) 791
AgsI TTSAA 4 cut(s) 1061, 1154, 1238, 1333
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 8 cut(s) 127, 136, 431, 796, 824, 984, 1147, 1252
AluI AGCT 8 cut(s) 127, 136, 431, 796, 824, 984, 1147, 1252
Alw21I GWGCWC 1 cut(s) 1254
Alw26I GTCTC 2 cut(s) 938, 1120
AlwNI CAGNNNCTG 3 cut(s) 136, 548, 1069
Ama87I CYCGRG 2 cut(s) 122, 1294
Aor13HI TCCGGA 1 cut(s) 1016
AoxI GGCC 3 cut(s) 415, 772, 1066
ApeKI GCWGC 5 cut(s) 40, 127, 1147, 1290, 1484
ApoI RAATTY 2 cut(s) 304, 858
ArsI GACNNNNNNTTYG 2 cut(s) 427, 459
AspLEI GCGC 3 cut(s) 572, 1172, 1376
AspS9I GGNCC 5 cut(s) 370, 415, 772, 1066, 1309
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 108, 433
AvaI CYCGRG 2 cut(s) 122, 1294
AvaII GGWCC 2 cut(s) 370, 1309
BaeGI GKGCMC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 1254
BbsI GAAGAC 2 cut(s) 105, 962
Bbv12I GWGCWC 1 cut(s) 1254
BbvI GCAGC 4 cut(s) 27, 114, 1134, 1277
BccI CCATC 4 cut(s) 418, 663, 811, 1036
BceAI ACGGC 2 cut(s) 393, 1250
BciT130I CCWGG 1 cut(s) 292
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 938, 1120
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 2 cut(s) 128, 1482
BfrI CTTAAG 1 cut(s) 791
BisI GCNGC 5 cut(s) 41, 128, 1148, 1291, 1485
BlsI GCNGC 5 cut(s) 42, 129, 1149, 1292, 1486
Bme1390I CCNGG 2 cut(s) 292, 419
Bme18I GGWCC 2 cut(s) 370, 1309
BmeT110I CYCGRG 2 cut(s) 122, 1294
BmgT120I GGNCC 5 cut(s) 370, 415, 772, 1066, 1309
BmiI GGNNCC 2 cut(s) 773, 1311
BmrFI CCNGG 2 cut(s) 292, 419
BmsI GCATC 2 cut(s) 1044, 1449
BpiI GAAGAC 2 cut(s) 105, 962
BpmI CTGGAG 1 cut(s) 954
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 3 cut(s) 513, 558, 962
BpuMI CCSGG 1 cut(s) 419
Bsa29I ATCGAT 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 1278
BsaI GGTCTC 1 cut(s) 1120
BsaJI CCNNGG 1 cut(s) 1266
BsaWI WCCGGW 1 cut(s) 1016
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 424, 533
Bse118I RCCGGY 1 cut(s) 629
Bse3DI GCAATG 1 cut(s) 387
BseAI TCCGGA 1 cut(s) 1016
BseBI CCWGG 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 1266
BseGI GGATG 4 cut(s) 178, 674, 1264, 1464
BseLI CCNNNNNNNGG 3 cut(s) 270, 424, 533
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 3 cut(s) 292, 444, 1314
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 4 cut(s) 27, 114, 1134, 1277
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 3 cut(s) 417, 774, 1068
BshVI ATCGAT 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 1254
BsiHKCI CYCGRG 2 cut(s) 122, 1294
BsiSI CCGG 3 cut(s) 418, 630, 1017
BslFI GGGAC 1 cut(s) 1244
BslI CCNNNNNNNGG 3 cut(s) 270, 424, 533
BsmAI GTCTC 2 cut(s) 938, 1120
BsmFI GGGAC 1 cut(s) 1244
BsmI GAATGC 2 cut(s) 345, 1376
BsnI GGCC 3 cut(s) 417, 774, 1068
Bso31I GGTCTC 1 cut(s) 1120
BsoBI CYCGRG 2 cut(s) 122, 1294
Bsp1286I GDGCHC 2 cut(s) 527, 1254
Bsp13I TCCGGA 1 cut(s) 1016
Bsp143I GATC 2 cut(s) 400, 1317
BspACI CCGC 4 cut(s) 165, 359, 413, 1360
BspANI GGCC 3 cut(s) 417, 774, 1068
BspCNI CTCAG 3 cut(s) 291, 445, 1315
BspDI ATCGAT 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 1016
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 2 cut(s) 773, 1311
BspMAI CTGCAG 2 cut(s) 132, 1486
BspTI CTTAAG 1 cut(s) 791
BspTNI GGTCTC 1 cut(s) 1120
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 1266
BssMI GATC 2 cut(s) 400, 1317
BssNI GRCGYC 1 cut(s) 1278
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 536, 544
Bst6I CTCTTC 3 cut(s) 910, 1290, 1386
BstACI GRCGYC 1 cut(s) 1278
BstAFI CTTAAG 1 cut(s) 791
BstC8I GCNNGC 5 cut(s) 108, 415, 582, 1070, 1168
BstDEI CTNAG 4 cut(s) 278, 453, 1323, 1451
BstDSI CCRYGG 1 cut(s) 1266
BstF5I GGATG 4 cut(s) 178, 674, 1264, 1464
BstFNI CGCG 1 cut(s) 359
BstHHI GCGC 3 cut(s) 572, 1172, 1376
BstKTI GATC 2 cut(s) 403, 1320
BstMAI GTCTC 2 cut(s) 938, 1120
BstMBI GATC 2 cut(s) 400, 1317
BstMWI GCNNNNNNNGC 4 cut(s) 133, 569, 590, 1296
BstNI CCWGG 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 290, 417
BstSFI CTRYAG 2 cut(s) 128, 1482
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 4 cut(s) 27, 114, 1134, 1277
BstV2I GAAGAC 2 cut(s) 105, 962
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 3 cut(s) 417, 774, 1068
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 1266
BtsCI GGATG 4 cut(s) 178, 674, 1264, 1464
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 450, 546, 1320
Cac8I GCNNGC 5 cut(s) 108, 415, 582, 1070, 1168
CaiI CAGNNNCTG 3 cut(s) 136, 548, 1069
CfoI GCGC 3 cut(s) 572, 1172, 1376
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 5 cut(s) 370, 415, 772, 1066, 1309
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 2 cut(s) 99, 1267
Csp6I GTAC 4 cut(s) 141, 392, 517, 1109
CviAII CATG 2 cut(s) 100, 581
CviQI GTAC 4 cut(s) 141, 392, 517, 1109
DdeI CTNAG 4 cut(s) 278, 453, 1323, 1451
DpnI GATC 2 cut(s) 402, 1319
DpnII GATC 2 cut(s) 400, 1317
DraI TTTAAA 1 cut(s) 828
Eam1104I CTCTTC 3 cut(s) 910, 1290, 1386
EarI CTCTTC 3 cut(s) 910, 1290, 1386
EciI GGCGGA 1 cut(s) 1349
Ecl136II GAGCTC 1 cut(s) 1252
Eco24I GRGCYC 1 cut(s) 1254
Eco31I GGTCTC 1 cut(s) 1120
Eco47I GGWCC 2 cut(s) 370, 1309
Eco53kI GAGCTC 1 cut(s) 1252
Eco57I CTGAAG 3 cut(s) 840, 1410, 1484
Eco88I CYCGRG 2 cut(s) 122, 1294
EcoICRI GAGCTC 1 cut(s) 1252
EcoO109I RGGNCCY 2 cut(s) 772, 1066
EcoRII CCWGG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 1254
FaeI CATG 2 cut(s) 103, 584
FaqI GGGAC 1 cut(s) 1244
FatI CATG 2 cut(s) 99, 580
FauI CCCGC 1 cut(s) 406
Fnu4HI GCNGC 5 cut(s) 41, 128, 1148, 1291, 1485
FokI GGATG 4 cut(s) 185, 681, 1271, 1471
FriOI GRGCYC 1 cut(s) 1254
Fsp4HI GCNGC 5 cut(s) 41, 128, 1148, 1291, 1485
FspBI CTAG 1 cut(s) 267
GlaI GCGC 3 cut(s) 571, 1171, 1375
GluI GCNGC 5 cut(s) 41, 128, 1148, 1291, 1485
GsuI CTGGAG 1 cut(s) 954
HaeIII GGCC 3 cut(s) 417, 774, 1068
HapII CCGG 3 cut(s) 418, 630, 1017
HgaI GACGC 2 cut(s) 99, 1267
HhaI GCGC 3 cut(s) 572, 1172, 1376
Hin1I GRCGYC 1 cut(s) 1278
Hin1II CATG 2 cut(s) 103, 584
Hin6I GCGC 3 cut(s) 570, 1170, 1374
HinP1I GCGC 3 cut(s) 570, 1170, 1374
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 9 cut(s) 182, 187, 242, 655, 705, 918, 926, 1207, 1447
HpaII CCGG 3 cut(s) 418, 630, 1017
HphI GGTGA 2 cut(s) 108, 433
Hpy166II GTNNAC 3 cut(s) 141, 1048, 1109
Hpy188I TCNGA 2 cut(s) 63, 400
Hpy188III TCNNGA 7 cut(s) 170, 530, 807, 818, 941, 971, 1017
Hpy8I GTNNAC 3 cut(s) 141, 1048, 1109
HpyAV CCTTC 9 cut(s) 264, 361, 403, 469, 590, 685, 776, 1156, 1398
HpyCH4III ACNGT 2 cut(s) 536, 544
HpyCH4IV ACGT 1 cut(s) 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 569, 590, 1296
HpyF3I CTNAG 4 cut(s) 278, 453, 1323, 1451
HpySE526I ACGT 1 cut(s) 437
Hsp92I GRCGYC 1 cut(s) 1278
Hsp92II CATG 2 cut(s) 103, 584
HspAI GCGC 3 cut(s) 570, 1170, 1374
Kpn2I TCCGGA 1 cut(s) 1016
Kzo9I GATC 2 cut(s) 400, 1317
LmnI GCTCC 2 cut(s) 133, 1144
Lsp1109I GCAGC 4 cut(s) 27, 114, 1134, 1277
LweI GCATC 2 cut(s) 1044, 1449
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 7 cut(s) 226, 448, 538, 544, 878, 932, 1279
MalI GATC 2 cut(s) 402, 1319
MboI GATC 2 cut(s) 400, 1317
MfeI CAATTG 1 cut(s) 159
MhlI GDGCHC 2 cut(s) 527, 1254
MluCI AATT 6 cut(s) 159, 304, 858, 868, 1078, 1300
MlyI GAGTC 3 cut(s) 196, 664, 927
MmeI TCCRAC 1 cut(s) 1287
MroI TCCGGA 1 cut(s) 1016
MseI TTAA 5 cut(s) 212, 501, 792, 827, 1492
MslI CAYNNNNRTG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 3 cut(s) 418, 630, 1017
MspR9I CCNGG 2 cut(s) 292, 419
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 2 cut(s) 345, 1376
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 4 cut(s) 133, 569, 590, 1296
NciI CCSGG 1 cut(s) 419
NdeII GATC 2 cut(s) 400, 1317
NlaIII CATG 2 cut(s) 103, 584
NlaIV GGNNCC 2 cut(s) 773, 1311
NmuCI GTSAC 4 cut(s) 226, 448, 544, 1279
NspI RCATGY 1 cut(s) 584
PaeI GCATGC 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 1294
PctI GAATGC 2 cut(s) 345, 1376
PfeI GAWTC 6 cut(s) 182, 242, 705, 926, 1207, 1447
PkrI GCNGC 5 cut(s) 42, 129, 1149, 1292, 1486
PleI GAGTC 3 cut(s) 195, 663, 926
PpsI GAGTC 3 cut(s) 195, 663, 926
Psp124BI GAGCTC 1 cut(s) 1254
Psp1406I AACGTT 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 773, 1311
PspPI GGNCC 5 cut(s) 370, 415, 772, 1066, 1309
PspXI VCTCGAGB 1 cut(s) 1294
PstI CTGCAG 2 cut(s) 132, 1486
PstNI CAGNNNCTG 3 cut(s) 136, 548, 1069
RsaI GTAC 4 cut(s) 142, 393, 518, 1110
RsaNI GTAC 4 cut(s) 141, 392, 517, 1109
RseI CAYNNNNRTG 1 cut(s) 380
SacI GAGCTC 1 cut(s) 1254
SaqAI TTAA 5 cut(s) 212, 501, 792, 827, 1492
SatI GCNGC 5 cut(s) 41, 128, 1148, 1291, 1485
Sau3AI GATC 2 cut(s) 400, 1317
Sau96I GGNCC 5 cut(s) 370, 415, 772, 1066, 1309
SchI GAGTC 3 cut(s) 196, 664, 927
ScrFI CCNGG 2 cut(s) 292, 419
SduI GDGCHC 2 cut(s) 527, 1254
SfaNI GCATC 2 cut(s) 1044, 1449
SfcI CTRYAG 2 cut(s) 128, 1482
Sfr274I CTCGAG 1 cut(s) 1294
SinI GGWCC 2 cut(s) 370, 1309
SlaI CTCGAG 1 cut(s) 1294
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 5 cut(s) 528, 573, 791, 941, 1294
SmoI CTYRAG 5 cut(s) 528, 573, 791, 941, 1294
SphI GCATGC 1 cut(s) 584
Sse9I AATT 6 cut(s) 159, 304, 858, 868, 1078, 1300
SsiI CCGC 4 cut(s) 165, 359, 413, 1360
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 1 cut(s) 1254
StyD4I CCNGG 2 cut(s) 290, 417
TaaI ACNGT 2 cut(s) 536, 544
TaiI ACGT 1 cut(s) 440
TaqI TCGA 7 cut(s) 20, 152, 185, 240, 725, 1295, 1316
TasI AATT 6 cut(s) 159, 304, 858, 868, 1078, 1300
TatI WGTACW 3 cut(s) 391, 516, 1108
TfiI GAWTC 6 cut(s) 182, 242, 705, 926, 1207, 1447
Tru1I TTAA 5 cut(s) 212, 501, 792, 827, 1492
Tru9I TTAA 5 cut(s) 212, 501, 792, 827, 1492
TscAI CASTG 3 cut(s) 457, 553, 1327
TseFI GTSAC 4 cut(s) 226, 448, 544, 1279
TseI GCWGC 5 cut(s) 40, 127, 1147, 1290, 1484
Tsp45I GTSAC 4 cut(s) 226, 448, 544, 1279
TspDTI ATGAA 5 cut(s) 398, 734, 965, 1175, 1275
TspRI CASTG 3 cut(s) 457, 553, 1327
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 370, 1309
XapI RAATTY 2 cut(s) 304, 858
XceI RCATGY 1 cut(s) 584
XhoI CTCGAG 1 cut(s) 1294
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.