Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0022046

Physical Location & Seq

Genomic Coordinates Forward (+)

15990207 .. 15991640

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G198200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTTGCCTGCGTCGCCGGAGCTACAAGAGCTGTGTACTATTGTTTCGAGAGCAATTGGCGGTTTAGATGATTTGGAATTGAGTCTAAATAAATTTACAGGTTCCTTGACATCGTCGCTTGTGACCCAAGTCATTGATTCTTGCAAAAGCGAAGCACCCACTAGAAGGTTGCTCAGGTTCTTCTCGTGGTGTCATAAGAATTTGGATTATGGTTTGAAAGACAAGGATTATAACTATGGCATTCGGGTTTTCGCGGAGAAGAAGGACCACACGGCAATGCACATTTTACTTTCTGACCTTGTGAAGACTGGAAGGGCAATGGAAGCTCAGACTTTTGGTCTTGTTGCTCAGGCTTTGGTCAAGTTGGGGAGGGAAGATGAGGCATTGGGTCTGTTTAAGAATTTGAGCACATACAAGTGTCCTCAAGATGGTCATACAGTCACCAGCATTGTCAATGCGCTTTGTTCTAGAGGGCATGCTAAGAGAGCAGAAGGGGTTGTTTGGCACCATAGGGATAAGATTGCTGGTATAGAGCCTTGCATTTATAAGAGTCTTTTATATGGATGGTCTGTGCAGGAGAATGTGAAGGAAGAAAGAAGAATAATCAAAGAAATGAAGTCAGCTGGGATCATGCCGGACTTGTTTTGCTATAACACATTCCTTAGGAGCCTTTGTATGAAAAACCTTAAATGCAATCCTTCTGGACTTGTTCCCGAAGCTTTAAATGTGATGATTGAGATGAAGACATATAGAATTTTTCCAAATTCCATTAGTTACAATATATTGCTGTCTTGCTTGGGAAGAACAAGAAGAGTCAAGGAATCTTGTAACATTCTTGAGACTATGAAGAAAACAGGTTGTTCTCCGGATTGGGTCAGCTATTATCTTGTTGCAAGAGTGTTGTATTTGTCCGGCAGATTTGGTAAAGGAAATAAGATGGTGGATGAGATGCTTGCAGAGGGCCTGCAACCGAATTGCAAGTTCTACTATGATTTGATTGGTATACTCGTTGGAAATGAGAGACCATATTATGCTCTTGAGCTATTTGAAAGGATGAAGGCAAGCTCATTGGGTGGTTATGGACCTGTTTATGATGTGCTGATTCCCAAGTTTTGTAGGGGAGGGGACTTTGAAAAGGGTAGAGAACTTTGGGATGAAGCCATGGCTATGGGTGTAACTCTTCGCTGCTCAAGTGATTTGTTGGACCCCTCAATCACAGAGGTTTTCAAGCCAACAAGGAATGAGGAAAAGCTCAGCCTTATAGACTGCGCCAAAGCAAAGGATCAAGAGAAAGTTAAAAAGAAGATGGGCAAGACAAAGAAGACCAAGAAGAAGATGACAGAGAGGAAGGTGAAGAAGAAGATGACAAAGAGGGAGGTGAAGAAGAAAATTAAGAAGGTAAAGAAGGAAAAGAAGAAATCTGCTGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

478

Amino Acids

54.14

Weight (kDa)

9.46

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61370
malus_domestica	MD06G1197500.v1.1
prunus_persica	Prupe.5G198200_v2.0.a1
pyrus_communis	pycom06g17450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 546
AccB1I	GGYRCC	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	1003
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	865
AciI	CCGC	2 cut(s)	60, 254
AclWI	GGATC	2 cut(s)	635, 1290
AcsI	RAATTY	5 cut(s)	92, 199, 400, 753, 763
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	2 cut(s)	165, 428
AgsI	TTSAA	4 cut(s)	217, 1049, 1133, 1228
AhdI	GACNNNNNGTC	1 cut(s)	336
AluBI	AGCT	9 cut(s)	22, 31, 326, 623, 719, 879, 1042, 1065, 1252
AluI	AGCT	9 cut(s)	22, 31, 326, 623, 719, 879, 1042, 1065, 1252
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	2 cut(s)	833, 1015
AlwI	GGATC	2 cut(s)	635, 1290
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	1 cut(s)	961
ApeKI	GCWGC	2 cut(s)	1185, 1424
ApoI	RAATTY	5 cut(s)	92, 199, 400, 753, 763
AspLEI	GCGC	2 cut(s)	460, 1271
AspS9I	GGNCC	4 cut(s)	265, 961, 1082, 1204
AsuHPI	GGTGA	3 cut(s)	433, 1363, 1390
AvaII	GGWCC	3 cut(s)	265, 1082, 1204
AxyI	CCTNAGG	1 cut(s)	662
BanI	GGYRCC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	184
BbsI	GAAGAC	3 cut(s)	311, 749, 1328
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	1172, 1411
BccI	CCATC	4 cut(s)	422, 558, 931, 1300
BceAI	ACGGC	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	833, 1015
BfaI	CTAG	2 cut(s)	162, 468
BisI	GCNGC	2 cut(s)	1186, 1425
BlpI	GCTNAGC	1 cut(s)	1253
BlsI	GCNGC	2 cut(s)	1187, 1426
Bme18I	GGWCC	3 cut(s)	265, 1082, 1204
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	4 cut(s)	265, 961, 1082, 1204
BmiI	GGNNCC	4 cut(s)	103, 506, 668, 1206
BmsI	GCATC	1 cut(s)	939
BoxI	GACNNNNGTC	1 cut(s)	128
BpiI	GAAGAC	3 cut(s)	311, 749, 1328
Bpu10I	CCTNAGC	2 cut(s)	173, 348
Bpu1102I	GCTNAGC	1 cut(s)	1253
BpuEI	CTTGAG	4 cut(s)	408, 857, 1058, 1174
BsaI	GGTCTC	1 cut(s)	1015
BsaJI	CCNNGG	1 cut(s)	1161
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 428
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	1 cut(s)	662
Bse3DI	GCAATG	2 cut(s)	282, 324
BseAI	TCCGGA	1 cut(s)	865
BseDI	CCNNGG	1 cut(s)	1161
BseGI	GGATG	4 cut(s)	569, 949, 1059, 1159
BseLI	CCNNNNNNNGG	2 cut(s)	165, 428
BseMI	GCAATG	2 cut(s)	282, 324
BseMII	CTCAG	4 cut(s)	187, 341, 362, 1267
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	1172, 1411
BseYI	CCCAGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	593
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	963
BshNI	GGYRCC	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	4 cut(s)	17, 635, 866, 912
BslFI	GGGAC	1 cut(s)	1139
BslI	CCNNNNNNNGG	2 cut(s)	165, 428
BsmAI	GTCTC	2 cut(s)	833, 1015
BsmFI	GGGAC	1 cut(s)	1139
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	963
Bso31I	GGTCTC	1 cut(s)	1015
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp13I	TCCGGA	1 cut(s)	865
Bsp143I	GATC	2 cut(s)	627, 1282
Bsp1720I	GCTNAGC	1 cut(s)	1253
Bsp19I	CCATGG	1 cut(s)	1161
BspACI	CCGC	2 cut(s)	60, 254
BspANI	GGCC	1 cut(s)	963
BspCNI	CTCAG	4 cut(s)	186, 340, 361, 1266
BspEI	TCCGGA	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	4 cut(s)	103, 506, 668, 1206
BspPI	GGATC	2 cut(s)	635, 1290
BspT107I	GGYRCC	1 cut(s)	504
BspTNI	GGTCTC	1 cut(s)	1015
BsrDI	GCAATG	2 cut(s)	282, 324
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	1161
BssMI	GATC	2 cut(s)	627, 1282
BssNAI	GTATAC	1 cut(s)	1004
BssSI	CACGAG	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	1161
Bst1107I	GTATAC	1 cut(s)	1004
Bst2BI	CACGAG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	805, 1185
BstC8I	GCNNGC	5 cut(s)	9, 477, 954, 965, 1063
BstDEI	CTNAG	6 cut(s)	173, 327, 348, 480, 662, 1253
BstDSI	CCRYGG	1 cut(s)	1161
BstF5I	GGATG	4 cut(s)	569, 949, 1059, 1159
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	460, 1271
BstKTI	GATC	2 cut(s)	630, 1285
BstMAI	GTCTC	2 cut(s)	833, 1015
BstMBI	GATC	2 cut(s)	627, 1282
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 28, 323, 485
BstNSI	RCATGY	1 cut(s)	479
BstPAI	GACNNNNGTC	1 cut(s)	128
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	1172, 1411
BstV2I	GAAGAC	3 cut(s)	311, 749, 1328
BstXI	CCANNNNNNTGG	1 cut(s)	1168
BstZ17I	GTATAC	1 cut(s)	1004
Bsu36I	CCTNAGG	1 cut(s)	662
BsuRI	GGCC	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	1161
BtsCI	GGATG	4 cut(s)	569, 949, 1059, 1159
Cac8I	GCNNGC	5 cut(s)	9, 477, 954, 965, 1063
CfoI	GCGC	2 cut(s)	460, 1271
Cfr13I	GGNCC	4 cut(s)	265, 961, 1082, 1204
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	3 cut(s)	476, 631, 1162
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	6 cut(s)	173, 327, 348, 480, 662, 1253
DpnI	GATC	2 cut(s)	629, 1284
DpnII	GATC	2 cut(s)	627, 1282
DraI	TTTAAA	1 cut(s)	723
DriI	GACNNNNNGTC	1 cut(s)	336
Eam1104I	CTCTTC	2 cut(s)	805, 1185
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	2 cut(s)	805, 1185
Eco130I	CCWWGG	1 cut(s)	1161
Eco31I	GGTCTC	1 cut(s)	1015
Eco47I	GGWCC	3 cut(s)	265, 1082, 1204
Eco81I	CCTNAGG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	961
EcoT14I	CCWWGG	1 cut(s)	1161
ErhI	CCWWGG	1 cut(s)	1161
FaeI	CATG	3 cut(s)	479, 634, 1165
FaqI	GGGAC	1 cut(s)	1139
FatI	CATG	3 cut(s)	475, 630, 1161
FblI	GTMKAC	1 cut(s)	1003
Fnu4HI	GCNGC	2 cut(s)	1186, 1425
FokI	GGATG	4 cut(s)	576, 956, 1066, 1166
Fsp4HI	GCNGC	2 cut(s)	1186, 1425
FspBI	CTAG	2 cut(s)	162, 468
GlaI	GCGC	2 cut(s)	459, 1270
GluI	GCNGC	2 cut(s)	1186, 1425
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	963
HapII	CCGG	4 cut(s)	17, 635, 866, 912
HhaI	GCGC	2 cut(s)	460, 1271
Hin1II	CATG	3 cut(s)	479, 634, 1165
Hin6I	GCGC	2 cut(s)	458, 1269
HinP1I	GCGC	2 cut(s)	458, 1269
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	6 cut(s)	82, 137, 550, 813, 821, 1102
HpaII	CCGG	4 cut(s)	17, 635, 866, 912
HphI	GGTGA	3 cut(s)	433, 1363, 1390
Hpy166II	GTNNAC	2 cut(s)	36, 1004
Hpy188I	TCNGA	2 cut(s)	295, 330
Hpy188III	TCNNGA	9 cut(s)	48, 425, 468, 702, 713, 836, 866, 1037, 1286
Hpy8I	GTNNAC	2 cut(s)	36, 1004
Hpy99I	CGWCG	2 cut(s)	16, 118
HpyCH4III	ACNGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 28, 323, 485
HpyF3I	CTNAG	6 cut(s)	173, 327, 348, 480, 662, 1253
Hsp92II	CATG	3 cut(s)	479, 634, 1165
HspAI	GCGC	2 cut(s)	458, 1269
Kpn2I	TCCGGA	1 cut(s)	865
Kzo9I	GATC	2 cut(s)	627, 1282
LmnI	GCTCC	2 cut(s)	19, 666
Lsp1109I	GCAGC	2 cut(s)	1172, 1411
LweI	GCATC	1 cut(s)	939
MaeI	CTAG	2 cut(s)	162, 468
MaeIII	GTNAC	5 cut(s)	121, 439, 773, 827, 1174
MalI	GATC	2 cut(s)	629, 1284
MboI	GATC	2 cut(s)	627, 1282
MfeI	CAATTG	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	9 cut(s)	54, 77, 92, 199, 400, 753, 763, 973, 1389
MlyI	GAGTC	3 cut(s)	91, 559, 822
MmeI	TCCRAC	2 cut(s)	991, 1182
MroI	TCCGGA	1 cut(s)	865
MseI	TTAA	6 cut(s)	396, 687, 722, 1296, 1392, 1432
MslI	CAYNNNNRTG	3 cut(s)	275, 415, 1166
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	4 cut(s)	17, 635, 866, 912
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	240
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	13, 28, 323, 485
NcoI	CCATGG	1 cut(s)	1161
NdeII	GATC	2 cut(s)	627, 1282
NlaIII	CATG	3 cut(s)	479, 634, 1165
NlaIV	GGNNCC	4 cut(s)	103, 506, 668, 1206
NmuCI	GTSAC	2 cut(s)	121, 439
NspI	RCATGY	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	479
PctI	GAATGC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	137, 821, 1102
PflFI	GACNNNGTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	1187, 1426
PleI	GAGTC	3 cut(s)	90, 558, 821
PpsI	GAGTC	3 cut(s)	90, 558, 821
PshAI	GACNNNNGTC	1 cut(s)	128
PsiI	TTATAA	2 cut(s)	231, 546
PspFI	CCCAGC	1 cut(s)	623
PspN4I	GGNNCC	4 cut(s)	103, 506, 668, 1206
PspPI	GGNCC	4 cut(s)	265, 961, 1082, 1204
PsyI	GACNNNGTC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	3 cut(s)	275, 415, 1166
SaqAI	TTAA	6 cut(s)	396, 687, 722, 1296, 1392, 1432
SatI	GCNGC	2 cut(s)	1186, 1425
Sau3AI	GATC	2 cut(s)	627, 1282
Sau96I	GGNCC	4 cut(s)	265, 961, 1082, 1204
SchI	GAGTC	3 cut(s)	91, 559, 822
SduI	GDGCHC	1 cut(s)	410
SfaNI	GCATC	1 cut(s)	939
SinI	GGWCC	3 cut(s)	265, 1082, 1204
SmiMI	CAYNNNNRTG	3 cut(s)	275, 415, 1166
SmlI	CTYRAG	4 cut(s)	423, 836, 1037, 1189
SmoI	CTYRAG	4 cut(s)	423, 836, 1037, 1189
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	9 cut(s)	54, 77, 92, 199, 400, 753, 763, 973, 1389
SsiI	CCGC	2 cut(s)	60, 254
SspMI	CTAG	2 cut(s)	162, 468
StyI	CCWWGG	1 cut(s)	1161
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	1 cut(s)	47
TasI	AATT	9 cut(s)	54, 77, 92, 199, 400, 753, 763, 973, 1389
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	137, 821, 1102
Tru1I	TTAA	6 cut(s)	396, 687, 722, 1296, 1392, 1432
Tru9I	TTAA	6 cut(s)	396, 687, 722, 1296, 1392, 1432
TseFI	GTSAC	2 cut(s)	121, 439
TseI	GCWGC	2 cut(s)	1185, 1424
Tsp45I	GTSAC	2 cut(s)	121, 439
TspDTI	ATGAA	6 cut(s)	629, 692, 755, 860, 1070, 1170
Tth111I	GACNNNGTC	1 cut(s)	112
VpaK11BI	GGWCC	3 cut(s)	265, 1082, 1204
XapI	RAATTY	5 cut(s)	92, 199, 400, 753, 763
XbaI	TCTAGA	1 cut(s)	467
XceI	RCATGY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	1003
XspI	CTAG	2 cut(s)	162, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.