Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0022046

Physical Location & Seq

Genomic Coordinates Forward (+)

33139781 .. 33141171

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1197500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCGTTCTGTATTGCTATCGAAATGGCAGAGGTTTTTGCTGCAAAATGCAGTCAGTACTCAGAAATCTCAATTCTTTTCGTGTTTTTACTACTCTACCATGTTGCCTGCGTCTTCGCCACCCGAGCTGCAAGAGCTGTGTACCATTGTTTCGAGTGCAATTGGCGGTCTGGATGATTTGGAATCGAGTCTAAATGAGTTTTCGGCTTCCTTAACATCGTCGATTGTGACCCAAGTAATCGATTCTTGCAAAAGCGAAGCACCCACTAGAAGGTTGCTCAGGTTCTTCTCCTGGTGTCATAAGAATTTGGGTTATGGTTTAGAAGACAAGGACTATAACTATGGCATTCGGGTTTTCGCAGAGAAGAAGGACCACACGGCAATGAACATTGTACTCTCTGATCTTGTGAAGGCGGGCCGGGTGATGGAAGCTCAAACTTTTGGTCTTGTTACTGAGGCATTGGTCAAGTTGGGGAAGGAAGATGAGGCATTGGGTATGTTTAAGAACTTGGACAAGTACAAGTGCCCTCAAGATGGTGTTACAGTCACTGCCATTGTCAATGCGCTTTGCGCTCAAGGGCACGCTAAAAGAGCAGAAGGGGTTGTTTTGCACCACAGGGATAAGATTGCCGGTATAGAGCCTTGTATTTACAGAAGTCTTTTGTATGGATGGTCTGTGCAGGAGAATGTGAAGGAAGCAAGAAGGATCATCAAAGAAATGAAGTCGATTGGGATTATGCCAGACTTGTTTTGCTACAACACATTCCTTCGGGCCCTTTGCGAGAGAAACCTCAAGCTCAATCCATCTGGACTAGTTCCTGAAGCTTTAAATGTGATGATTGAGATGAGGTCTTATAGAATTTCTCCCAATTCCATTAGTTACAATATATTGCTTTCTTGTTTGGGAAGAACAAGAAGAGTCAAGGAATCTTGTAACATTCTTGAGACTATGAAAAAGACGGGTTGCTCTCCGGATAGCGTTAGCTATTACCTTGTGGTAAGAGTGTTGTATTTGTCCGGAAGATTTGGTAAAGGAAATAAGTTGGTGGACGAGATGCTTGAACAGGGCCTGCAACCGAATCGTAAGTTCTACTATGACTTGATTGGTGTACTCGTTGGCAAGGATAGACCACATTATGCTCTGGAGCTACTTCAAAGAATGAAGGCAAGCGCATTGGGAGGTTATGGGCCGGTTTATGATGTGCTGATTCCCAAGTTTTGTAGGGGAGGGGACTTTGAAAAGGGTAGAGAGCTCTGGGATGAAGCCGTGGCTATGGGCATCACTCTTCGCTGCTCGAGCAATTTAATGCGCCAATGCAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

442

Amino Acids

49.62

Weight (kDa)

8.95

Isoelectric Point (pI)

47.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	216 - 260	5.1e-07	PPR repeat family
PPR_2	PF13041	289 - 333	8.4e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61370
malus_domestica	MD06G1197500.v1.1
prunus_persica	Prupe.5G198200_v2.0.a1
pyrus_communis	pycom06g17450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	970, 1016
AciI	CCGC	2 cut(s)	165, 413
AclWI	GGATC	1 cut(s)	713
AcsI	RAATTY	2 cut(s)	304, 858
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	5 cut(s)	58, 142, 393, 518, 1110
AfiI	CCNNNNNNNGG	3 cut(s)	270, 424, 533
AgsI	TTSAA	3 cut(s)	1061, 1154, 1238
AhlI	ACTAGT	1 cut(s)	811
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	8 cut(s)	127, 136, 431, 796, 824, 984, 1147, 1252
AluI	AGCT	8 cut(s)	127, 136, 431, 796, 824, 984, 1147, 1252
Alw21I	GWGCWC	1 cut(s)	1254
Alw26I	GTCTC	1 cut(s)	938
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	2 cut(s)	548, 1069
Ama87I	CYCGRG	2 cut(s)	122, 1294
Aor13HI	TCCGGA	2 cut(s)	970, 1016
AoxI	GGCC	4 cut(s)	415, 771, 1066, 1187
ApaI	GGGCCC	1 cut(s)	775
ApeKI	GCWGC	3 cut(s)	40, 127, 1290
ApoI	RAATTY	2 cut(s)	304, 858
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AspLEI	GCGC	4 cut(s)	565, 572, 1172, 1311
AspS9I	GGNCC	6 cut(s)	370, 415, 771, 772, 1066, 1187
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	433
AvaI	CYCGRG	2 cut(s)	122, 1294
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	3 cut(s)	527, 582, 775
BanII	GRGCYC	2 cut(s)	775, 1254
BbsI	GAAGAC	2 cut(s)	105, 330
Bbv12I	GWGCWC	1 cut(s)	1254
BbvI	GCAGC	3 cut(s)	27, 114, 1277
BccI	CCATC	4 cut(s)	418, 527, 663, 811
BceAI	ACGGC	2 cut(s)	393, 1250
BcgI	CGANNNNNNTGC	2 cut(s)	1061, 1095
BciT130I	CCWGG	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	1 cut(s)	938
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	2 cut(s)	267, 812
BisI	GCNGC	3 cut(s)	41, 128, 1291
BlsI	GCNGC	3 cut(s)	42, 129, 1292
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	292, 419
Bme18I	GGWCC	1 cut(s)	370
BmeT110I	CYCGRG	2 cut(s)	122, 1294
BmgT120I	GGNCC	6 cut(s)	370, 415, 771, 772, 1066, 1187
BmiI	GGNNCC	1 cut(s)	773
BmrFI	CCNGG	2 cut(s)	292, 419
BmsI	GCATC	2 cut(s)	1044, 1287
BpiI	GAAGAC	2 cut(s)	105, 330
BpmI	CTGGAG	1 cut(s)	1163
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	4 cut(s)	513, 558, 776, 962
BpuMI	CCSGG	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	1266
BsaWI	WCCGGW	2 cut(s)	970, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 424, 533
Bse118I	RCCGGY	2 cut(s)	629, 1189
Bse3DI	GCAATG	1 cut(s)	387
BseAI	TCCGGA	2 cut(s)	970, 1016
BseBI	CCWGG	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	1266
BseGI	GGATG	3 cut(s)	178, 674, 1264
BseLI	CCNNNNNNNGG	3 cut(s)	270, 424, 533
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	74, 292, 444
BseSI	GKGCMC	3 cut(s)	527, 582, 775
BseXI	GCAGC	3 cut(s)	27, 114, 1277
BsgI	GTGCAG	1 cut(s)	698
BshFI	GGCC	4 cut(s)	417, 773, 1068, 1189
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	1254
BsiHKCI	CYCGRG	2 cut(s)	122, 1294
BsiSI	CCGG	5 cut(s)	418, 630, 971, 1017, 1190
BslFI	GGGAC	1 cut(s)	1244
BslI	CCNNNNNNNGG	3 cut(s)	270, 424, 533
BsmAI	GTCTC	1 cut(s)	938
BsmFI	GGGAC	1 cut(s)	1244
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	4 cut(s)	417, 773, 1068, 1189
BsoBI	CYCGRG	2 cut(s)	122, 1294
Bsp120I	GGGCCC	1 cut(s)	771
Bsp1286I	GDGCHC	4 cut(s)	527, 582, 775, 1254
Bsp13I	TCCGGA	2 cut(s)	970, 1016
Bsp143I	GATC	2 cut(s)	400, 705
BspACI	CCGC	2 cut(s)	165, 413
BspANI	GGCC	4 cut(s)	417, 773, 1068, 1189
BspCNI	CTCAG	3 cut(s)	73, 291, 445
BspDI	ATCGAT	1 cut(s)	240
BspEI	TCCGGA	2 cut(s)	970, 1016
BspLI	GGNNCC	1 cut(s)	773
BspPI	GGATC	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	2 cut(s)	629, 1189
BssAI	RCCGGY	2 cut(s)	629, 1189
BssECI	CCNNGG	1 cut(s)	1266
BssMI	GATC	2 cut(s)	400, 705
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	2 cut(s)	910, 1290
BstC8I	GCNNGC	5 cut(s)	108, 415, 582, 1070, 1168
BstDEI	CTNAG	3 cut(s)	60, 278, 453
BstDSI	CCRYGG	1 cut(s)	1266
BstF5I	GGATG	3 cut(s)	178, 674, 1264
BstHHI	GCGC	4 cut(s)	565, 572, 1172, 1311
BstKTI	GATC	2 cut(s)	403, 708
BstMAI	GTCTC	1 cut(s)	938
BstMBI	GATC	2 cut(s)	400, 705
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 133, 569, 590, 1296
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	290, 417
BstSLI	GKGCMC	3 cut(s)	527, 582, 775
BstV1I	GCAGC	3 cut(s)	27, 114, 1277
BstV2I	GAAGAC	2 cut(s)	105, 330
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	417, 773, 1068, 1189
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	1266
BtsCI	GGATG	3 cut(s)	178, 674, 1264
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	5 cut(s)	108, 415, 582, 1070, 1168
CaiI	CAGNNNCTG	2 cut(s)	548, 1069
CfoI	GCGC	4 cut(s)	565, 572, 1172, 1311
Cfr10I	RCCGGY	2 cut(s)	629, 1189
Cfr13I	GGNCC	6 cut(s)	370, 415, 771, 772, 1066, 1187
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	5 cut(s)	57, 141, 392, 517, 1109
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	5 cut(s)	57, 141, 392, 517, 1109
DdeI	CTNAG	3 cut(s)	60, 278, 453
DpnI	GATC	2 cut(s)	402, 707
DpnII	GATC	2 cut(s)	400, 705
DraI	TTTAAA	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	910, 1290
EarI	CTCTTC	2 cut(s)	910, 1290
Ecl136II	GAGCTC	1 cut(s)	1252
Eco24I	GRGCYC	2 cut(s)	775, 1254
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	1252
Eco57I	CTGAAG	1 cut(s)	840
Eco88I	CYCGRG	2 cut(s)	122, 1294
EcoICRI	GAGCTC	1 cut(s)	1252
EcoO109I	RGGNCCY	2 cut(s)	772, 1066
EcoRII	CCWGG	1 cut(s)	290
EcoT38I	GRGCYC	2 cut(s)	775, 1254
FaeI	CATG	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	1244
FatI	CATG	1 cut(s)	99
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	41, 128, 1291
FokI	GGATG	3 cut(s)	185, 681, 1271
FriOI	GRGCYC	2 cut(s)	775, 1254
Fsp4HI	GCNGC	3 cut(s)	41, 128, 1291
FspBI	CTAG	2 cut(s)	267, 812
GlaI	GCGC	4 cut(s)	564, 571, 1171, 1310
GluI	GCNGC	3 cut(s)	41, 128, 1291
GsuI	CTGGAG	1 cut(s)	1163
HaeIII	GGCC	4 cut(s)	417, 773, 1068, 1189
HapII	CCGG	5 cut(s)	418, 630, 971, 1017, 1190
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	4 cut(s)	565, 572, 1172, 1311
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	4 cut(s)	563, 570, 1170, 1309
HinP1I	GCGC	4 cut(s)	563, 570, 1170, 1309
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	7 cut(s)	182, 187, 242, 918, 926, 1078, 1207
HpaII	CCGG	5 cut(s)	418, 630, 971, 1017, 1190
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	3 cut(s)	141, 1048, 1109
Hpy188I	TCNGA	2 cut(s)	63, 400
Hpy188III	TCNNGA	8 cut(s)	170, 530, 807, 818, 941, 971, 1017, 1142
Hpy8I	GTNNAC	3 cut(s)	141, 1048, 1109
Hpy99I	CGWCG	1 cut(s)	223
HpyAV	CCTTC	9 cut(s)	264, 361, 403, 469, 590, 685, 696, 776, 1156
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	9 cut(s)	43, 50, 130, 158, 249, 610, 679, 1072, 1317
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 133, 569, 590, 1296
HpyF3I	CTNAG	3 cut(s)	60, 278, 453
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	4 cut(s)	563, 570, 1170, 1309
Kpn2I	TCCGGA	2 cut(s)	970, 1016
Kzo9I	GATC	2 cut(s)	400, 705
LmnI	GCTCC	1 cut(s)	1144
Lsp1109I	GCAGC	3 cut(s)	27, 114, 1277
LweI	GCATC	2 cut(s)	1044, 1287
MaeI	CTAG	2 cut(s)	267, 812
MaeIII	GTNAC	6 cut(s)	226, 448, 538, 544, 878, 932
MalI	GATC	2 cut(s)	402, 707
MboI	GATC	2 cut(s)	400, 705
MboII	GAAGA	9 cut(s)	105, 277, 335, 376, 491, 918, 927, 1032, 1277
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	4 cut(s)	527, 582, 775, 1254
MluCI	AATT	6 cut(s)	71, 159, 304, 858, 868, 1300
MlyI	GAGTC	2 cut(s)	196, 927
MnlI	CCTC	8 cut(s)	24, 448, 478, 537, 800, 840, 1172, 1220
MroI	TCCGGA	2 cut(s)	970, 1016
MseI	TTAA	4 cut(s)	212, 501, 827, 1304
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	5 cut(s)	418, 630, 971, 1017, 1190
MspR9I	CCNGG	2 cut(s)	292, 419
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	5 cut(s)	124, 133, 569, 590, 1296
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	2 cut(s)	400, 705
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	773
NmuCI	GTSAC	2 cut(s)	226, 544
PaeR7I	CTCGAG	1 cut(s)	1294
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	5 cut(s)	182, 242, 926, 1078, 1207
PkrI	GCNGC	3 cut(s)	42, 129, 1292
PleI	GAGTC	2 cut(s)	195, 926
PpsI	GAGTC	2 cut(s)	195, 926
Psp124BI	GAGCTC	1 cut(s)	1254
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	773
PspOMI	GGGCCC	1 cut(s)	771
PspPI	GGNCC	6 cut(s)	370, 415, 771, 772, 1066, 1187
PspXI	VCTCGAGB	1 cut(s)	1294
PstNI	CAGNNNCTG	2 cut(s)	548, 1069
RsaI	GTAC	5 cut(s)	58, 142, 393, 518, 1110
RsaNI	GTAC	5 cut(s)	57, 141, 392, 517, 1109
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	1254
SaqAI	TTAA	4 cut(s)	212, 501, 827, 1304
SatI	GCNGC	3 cut(s)	41, 128, 1291
Sau3AI	GATC	2 cut(s)	400, 705
Sau96I	GGNCC	6 cut(s)	370, 415, 771, 772, 1066, 1187
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	2 cut(s)	196, 927
ScrFI	CCNGG	2 cut(s)	292, 419
SduI	GDGCHC	4 cut(s)	527, 582, 775, 1254
SfaNI	GCATC	2 cut(s)	1044, 1287
Sfr274I	CTCGAG	1 cut(s)	1294
SinI	GGWCC	1 cut(s)	370
SlaI	CTCGAG	1 cut(s)	1294
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	5 cut(s)	528, 573, 791, 941, 1294
SmoI	CTYRAG	5 cut(s)	528, 573, 791, 941, 1294
SpeI	ACTAGT	1 cut(s)	811
Sse9I	AATT	6 cut(s)	71, 159, 304, 858, 868, 1300
SsiI	CCGC	2 cut(s)	165, 413
SspMI	CTAG	2 cut(s)	267, 812
SstI	GAGCTC	1 cut(s)	1254
StyD4I	CCNGG	2 cut(s)	290, 417
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	7 cut(s)	20, 152, 185, 221, 240, 725, 1295
TasI	AATT	6 cut(s)	71, 159, 304, 858, 868, 1300
TatI	WGTACW	4 cut(s)	56, 391, 516, 1108
TfiI	GAWTC	5 cut(s)	182, 242, 926, 1078, 1207
Tru1I	TTAA	4 cut(s)	212, 501, 827, 1304
Tru9I	TTAA	4 cut(s)	212, 501, 827, 1304
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	226, 544
TseI	GCWGC	3 cut(s)	40, 127, 1290
Tsp45I	GTSAC	2 cut(s)	226, 544
TspDTI	ATGAA	5 cut(s)	398, 734, 965, 1175, 1275
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	2 cut(s)	304, 858
XhoI	CTCGAG	1 cut(s)	1294
XspI	CTAG	2 cut(s)	267, 812
ZrmI	AGTACT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.