AT5G61930

APO protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017486
Physical Location & Seq
Reverse (-)
24865086 .. 24868812
3727 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61930.1

Sequence Viewer

Length: 1209 bp
ATGCAGAGAAGAAAGCTAGTAGAAATCTCCATCTTCGTAATCAGAAAATCTAATTTTTCATCTTCCATTAAATCTCTAACCAATCTCGACGTCGACGTTTCAGTTGATAATGATGAAGATCCTCTTTACGCCGACGTACCTAAACCTCCGAAGGATAAATCGGAGAGGAAACCGTATCCGACTCCGATGAAGGAGTTGATTCGTCGTGCGAAAGAGGAGAAACAACTGAGAAAATTACAACCATGTCGAGTTCTCGAAGATCCACCGGATAATGGTTTACTTGTGCCGGAACTTGTCGACGTGGCTCACTGTGTTCACCGATGCCGTAACATGTTGCTCTCTGGCCTCTCTAAAATCATTCATCATGTTCCTGTTCATCGTTGCAGATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAAATCAGGACTTGCACTGGTCCCGGGAGTGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGAGGAAGAGTGAGTGATGTTGTGTTGTTCCCAAAATGTTTTCACCTCTATGACCGTGCTGTGAAACCGAGAGTTATACATGATGAGAGATTTACTGTCCCTAAAATCTCTGCGGTTCTTGAGCTATGCATACAGGCTGGTGTAGACCTCGAGAAATTCCCATCCAAGCGAAGATCGAAACCTGTGTACAGCATCGAAGGACGGATTGTGGATTTTGAGGACGTCAACGATGGAAATTCAGAATTGGCAGTTACTTCTACTACTACACTTATACAAGAAGATGATCGTTGCAAGGAAGAGAAGAAGAGCTTGAAGGAATTAAGCTTCGAGACGATGGAGTCATGGTTTGAAATGGTTTTAGGGGTCAGGAAACTGATGGAGAGATACAGAGTGTGGACTTGTGGGTATTGTCCAGAGATTCAGGTGGGTCCAAAGGGACACAAAGTAAGGATGTGTAAAGCCACAAAGCATCAGATGCGAGACGGAATGCATGCCTGGCAAGAAGCGACTATTGATGATGTGGTCGGTCCAACCTATGTGTGGCATGTTCGGGATCCTACTGATGGTTCTGTTCTTGATAATAGCTTGAAGAGGTTTTACGGGAAGGCTCCTGCGGTTATAGAGATGTGTGTGCAAGGTGGTGCACCGGTACCTGATCAGTACAACAGTATGATGAGGCTCGATGTAGTTTACCCTCAACGCGATGAGGTCGATCTAGTCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APO_RNA-bind

Protein Analysis

402

Amino Acids

45.91

Weight (kDa)

8.58

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APO_RNA-bind PF05634 33 - 232 1.1e-86 APO RNA-binding
APO_RNA-bind PF05634 264 - 388 5.2e-25 APO RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 820
AatII GACGTC 2 cut(s) 93, 708
Acc65I GGTACC 1 cut(s) 1132
AccB1I GGYRCC 1 cut(s) 1132
AccI GTMKAC 3 cut(s) 93, 297, 627
AccII CGCG 1 cut(s) 1185
AciI CCGC 2 cut(s) 596, 1097
AclWI GGATC 4 cut(s) 113, 254, 1031, 1044
AcsI RAATTY 2 cut(s) 638, 718
AcyI GRCGYC 2 cut(s) 90, 705
AfaI GTAC 4 cut(s) 138, 671, 1134, 1145
AfiI CCNNNNNNNGG 4 cut(s) 272, 452, 1023, 1046
AflIII ACRYGT 1 cut(s) 330
AgeI ACCGGT 1 cut(s) 1129
AgsI TTSAA 4 cut(s) 459, 796, 833, 1072
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 977
AluBI AGCT 5 cut(s) 16, 607, 792, 807, 1068
AluI AGCT 5 cut(s) 16, 607, 792, 807, 1068
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 2 cut(s) 806, 957
Alw44I GTGCAC 1 cut(s) 1125
AlwI GGATC 4 cut(s) 113, 254, 1031, 1044
Ama87I CYCGRG 2 cut(s) 446, 632
AoxI GGCC 1 cut(s) 343
ApaLI GTGCAC 1 cut(s) 1125
ApoI RAATTY 2 cut(s) 638, 718
AsiGI ACCGGT 1 cut(s) 1129
Asp718I GGTACC 1 cut(s) 1132
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 3 cut(s) 443, 911, 1010
AsuC2I CCSGG 2 cut(s) 447, 448
AsuHPI GGTGA 2 cut(s) 308, 518
AvaI CYCGRG 2 cut(s) 446, 632
AvaII GGWCC 3 cut(s) 443, 911, 1010
BaeGI GKGCMC 1 cut(s) 1129
BamHI GGATCC 1 cut(s) 1036
BanI GGYRCC 1 cut(s) 1132
BarI GAAGNNNNNNTAC 2 cut(s) 1064, 1096
Bbv12I GWGCWC 1 cut(s) 1129
BbvCI CCTCAGC 1 cut(s) 396
BccI CCATC 6 cut(s) 38, 652, 707, 811, 853, 1040
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 979
BciVI GTATCC 1 cut(s) 186
BclI TGATCA 1 cut(s) 1138
BcnI CCSGG 2 cut(s) 447, 448
BcoDI GTCTC 2 cut(s) 806, 957
BfaI CTAG 2 cut(s) 17, 1199
BfuI GTATCC 1 cut(s) 186
Bme1390I CCNGG 3 cut(s) 447, 448, 979
Bme18I GGWCC 3 cut(s) 443, 911, 1010
BmeT110I CYCGRG 2 cut(s) 446, 632
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 3 cut(s) 443, 911, 1010
BmiI GGNNCC 5 cut(s) 445, 912, 1038, 1092, 1134
BmrFI CCNGG 3 cut(s) 447, 448, 979
BmsI GCATC 4 cut(s) 311, 684, 948, 961
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 2 cut(s) 447, 448
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 90, 705
BsaJI CCNNGG 1 cut(s) 446
BsaWI WCCGGW 2 cut(s) 265, 1129
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 452, 1023, 1046
Bse118I RCCGGY 1 cut(s) 1129
Bse1I ACTGG 1 cut(s) 445
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 979
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 2 cut(s) 644, 939
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 4 cut(s) 272, 452, 1023, 1046
BseMII CTCAG 2 cut(s) 218, 387
BseNI ACTGG 1 cut(s) 445
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 1129
Bsh1236I CGCG 1 cut(s) 1185
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 1 cut(s) 1132
BshTI ACCGGT 1 cut(s) 1129
BsiHKAI GWGCWC 1 cut(s) 1129
BsiHKCI CYCGRG 2 cut(s) 446, 632
BsiSI CCGG 4 cut(s) 266, 287, 447, 1130
BslFI GGGAC 3 cut(s) 429, 566, 933
BslI CCNNNNNNNGG 4 cut(s) 272, 452, 1023, 1046
BsmAI GTCTC 2 cut(s) 806, 957
BsmBI CGTCTC 2 cut(s) 806, 957
BsmFI GGGAC 3 cut(s) 429, 566, 933
BsmI GAATGC 1 cut(s) 975
BsnI GGCC 1 cut(s) 345
BsoBI CYCGRG 2 cut(s) 446, 632
Bsp1286I GDGCHC 1 cut(s) 1129
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
BspACI CCGC 2 cut(s) 596, 1097
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 2 cut(s) 219, 388
BspFNI CGCG 1 cut(s) 1185
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 5 cut(s) 445, 912, 1038, 1092, 1134
BspPI GGATC 4 cut(s) 113, 254, 1031, 1044
BspQI GCTCTTC 1 cut(s) 782
BspT107I GGYRCC 1 cut(s) 1132
BsrFI RCCGGY 1 cut(s) 1129
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 1129
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
BssNI GRCGYC 2 cut(s) 90, 705
Bst2UI CCWGG 1 cut(s) 979
Bst4CI ACNGT 5 cut(s) 174, 311, 539, 580, 1151
Bst6I CTCTTC 4 cut(s) 484, 774, 782, 1067
BstACI GRCGYC 2 cut(s) 90, 705
BstAPI GCANNNNNTGC 2 cut(s) 390, 958
BstAUI TGTACA 1 cut(s) 669
BstC8I GCNNGC 2 cut(s) 413, 975
BstDEI CTNAG 2 cut(s) 227, 396
BstF5I GGATG 2 cut(s) 644, 939
BstFNI CGCG 1 cut(s) 1185
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 7 cut(s) 121, 262, 659, 769, 1039, 1141, 1198
BstMAI GTCTC 2 cut(s) 806, 957
BstMBI GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
BstMWI GCNNNNNNNGC 3 cut(s) 390, 958, 979
BstNI CCWGG 1 cut(s) 979
BstNSI RCATGY 3 cut(s) 334, 977, 1031
BstSCI CCNGG 3 cut(s) 445, 446, 977
BstSLI GKGCMC 1 cut(s) 1129
BstUI CGCG 1 cut(s) 1185
BstX2I RGATCY 3 cut(s) 118, 259, 1036
BstYI RGATCY 3 cut(s) 118, 259, 1036
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 1200
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 644, 939
BtsIMutI CAGTG 2 cut(s) 307, 438
Cac8I GCNNGC 2 cut(s) 413, 975
CciI TCATGA 1 cut(s) 421
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 1129
Cfr13I GGNCC 3 cut(s) 443, 911, 1010
Cfr9I CCCGGG 1 cut(s) 446
Csp6I GTAC 4 cut(s) 137, 670, 1133, 1144
CspAI ACCGGT 1 cut(s) 1129
CviAII CATG 9 cut(s) 243, 331, 365, 422, 473, 563, 825, 974, 1028
CviQI GTAC 4 cut(s) 137, 670, 1133, 1144
DdeI CTNAG 2 cut(s) 227, 396
DpnI GATC 7 cut(s) 120, 261, 658, 768, 1038, 1140, 1197
DpnII GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
DrdI GACNNNNNNGTC 1 cut(s) 820
DseDI GACNNNNNNGTC 1 cut(s) 820
Eam1104I CTCTTC 4 cut(s) 484, 774, 782, 1067
EarI CTCTTC 4 cut(s) 484, 774, 782, 1067
Eco47I GGWCC 3 cut(s) 443, 911, 1010
Eco88I CYCGRG 2 cut(s) 446, 632
EcoRII CCWGG 1 cut(s) 977
EcoT22I ATGCAT 2 cut(s) 614, 975
Esp3I CGTCTC 2 cut(s) 806, 957
FaeI CATG 9 cut(s) 246, 334, 368, 425, 476, 566, 828, 977, 1031
FalI AAGNNNNNCTT 4 cut(s) 108, 140, 776, 808
FaqI GGGAC 3 cut(s) 429, 566, 933
FatI CATG 9 cut(s) 242, 330, 364, 421, 472, 562, 824, 973, 1027
FbaI TGATCA 1 cut(s) 1138
FblI GTMKAC 3 cut(s) 93, 297, 627
FokI GGATG 2 cut(s) 631, 946
FspBI CTAG 2 cut(s) 17, 1199
GlaI GCGC 1 cut(s) 394
HaeIII GGCC 1 cut(s) 345
HapII CCGG 4 cut(s) 266, 287, 447, 1130
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 2 cut(s) 90, 705
Hin1II CATG 9 cut(s) 246, 334, 368, 425, 476, 566, 828, 977, 1031
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 3 cut(s) 94, 298, 709
HindII GTYRAC 3 cut(s) 94, 298, 709
HindIII AAGCTT 1 cut(s) 805
HinfI GANTC 5 cut(s) 181, 199, 469, 821, 901
HpaII CCGG 4 cut(s) 266, 287, 447, 1130
HphI GGTGA 2 cut(s) 308, 518
Hpy188I TCNGA 7 cut(s) 44, 150, 163, 180, 186, 724, 957
Hpy99I CGWCG 6 cut(s) 92, 95, 98, 137, 207, 302
HpyAV CCTTC 5 cut(s) 145, 184, 674, 790, 1081
HpyCH4III ACNGT 5 cut(s) 174, 311, 539, 580, 1151
HpyCH4IV ACGT 5 cut(s) 90, 96, 135, 300, 705
HpyCH4V TGCA 8 cut(s) 4, 384, 438, 612, 774, 973, 1117, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 390, 958, 979
HpyF3I CTNAG 2 cut(s) 227, 396
HpySE526I ACGT 5 cut(s) 90, 96, 135, 300, 705
Hsp92I GRCGYC 2 cut(s) 90, 705
Hsp92II CATG 9 cut(s) 246, 334, 368, 425, 476, 566, 828, 977, 1031
HspAI GCGC 1 cut(s) 393
KpnI GGTACC 1 cut(s) 1136
Ksp22I TGATCA 1 cut(s) 1138
Kzo9I GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
LguI GCTCTTC 1 cut(s) 782
LmnI GCTCC 1 cut(s) 1096
LweI GCATC 4 cut(s) 311, 684, 948, 961
MaeI CTAG 2 cut(s) 17, 1199
MaeII ACGT 5 cut(s) 90, 96, 135, 300, 705
MaeIII GTNAC 2 cut(s) 326, 733
MalI GATC 7 cut(s) 120, 261, 658, 768, 1038, 1140, 1197
MboI GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
MflI RGATCY 3 cut(s) 118, 259, 1036
MhlI GDGCHC 1 cut(s) 1129
MluCI AATT 6 cut(s) 52, 233, 638, 718, 725, 800
MlyI GAGTC 3 cut(s) 175, 463, 830
MmeI TCCRAC 2 cut(s) 203, 1037
Mph1103I ATGCAT 2 cut(s) 614, 975
MseI TTAA 2 cut(s) 69, 803
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 4 cut(s) 266, 287, 447, 1130
MspR9I CCNGG 3 cut(s) 447, 448, 979
Mva1269I GAATGC 1 cut(s) 975
MvaI CCWGG 1 cut(s) 979
MvnI CGCG 1 cut(s) 1185
MwoI GCNNNNNNNGC 3 cut(s) 390, 958, 979
NciI CCSGG 2 cut(s) 447, 448
NdeII GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
NlaIII CATG 9 cut(s) 246, 334, 368, 425, 476, 566, 828, 977, 1031
NlaIV GGNNCC 5 cut(s) 445, 912, 1038, 1092, 1134
NsiI ATGCAT 2 cut(s) 614, 975
NspI RCATGY 3 cut(s) 334, 977, 1031
PaeI GCATGC 1 cut(s) 977
PaeR7I CTCGAG 1 cut(s) 632
PagI TCATGA 1 cut(s) 421
PciI ACATGT 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 782
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 975
PfeI GAWTC 2 cut(s) 199, 901
PinAI ACCGGT 1 cut(s) 1129
PleI GAGTC 3 cut(s) 175, 463, 829
PpsI GAGTC 3 cut(s) 175, 463, 829
PscI ACATGT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 977
PspGI CCWGG 1 cut(s) 977
PspN4I GGNNCC 5 cut(s) 445, 912, 1038, 1092, 1134
PspPI GGNCC 3 cut(s) 443, 911, 1010
PsuI RGATCY 3 cut(s) 118, 259, 1036
RsaI GTAC 4 cut(s) 138, 671, 1134, 1145
RsaNI GTAC 4 cut(s) 137, 670, 1133, 1144
RseI CAYNNNNRTG 1 cut(s) 531
SalI GTCGAC 2 cut(s) 92, 296
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 2 cut(s) 69, 803
Sau3AI GATC 7 cut(s) 118, 259, 656, 766, 1036, 1138, 1195
Sau96I GGNCC 3 cut(s) 443, 911, 1010
SchI GAGTC 3 cut(s) 175, 463, 830
ScrFI CCNGG 3 cut(s) 447, 448, 979
SduI GDGCHC 1 cut(s) 1129
SfaNI GCATC 4 cut(s) 311, 684, 948, 961
Sfr274I CTCGAG 1 cut(s) 632
SgrDI CGTCGACG 1 cut(s) 92
SinI GGWCC 3 cut(s) 443, 911, 1010
SlaI CTCGAG 1 cut(s) 632
SmaI CCCGGG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 602, 632
SmoI CTYRAG 2 cut(s) 602, 632
SphI GCATGC 1 cut(s) 977
Sse9I AATT 6 cut(s) 52, 233, 638, 718, 725, 800
SsiI CCGC 2 cut(s) 596, 1097
SspMI CTAG 2 cut(s) 17, 1199
StyD4I CCNGG 3 cut(s) 445, 446, 977
TaaI ACNGT 5 cut(s) 174, 311, 539, 580, 1151
TaiI ACGT 5 cut(s) 93, 99, 138, 303, 708
TaqII GACCGA 1 cut(s) 998
TasI AATT 6 cut(s) 52, 233, 638, 718, 725, 800
TatI WGTACW 2 cut(s) 669, 1143
TfiI GAWTC 2 cut(s) 199, 901
Tru1I TTAA 2 cut(s) 69, 803
Tru9I TTAA 2 cut(s) 69, 803
TscAI CASTG 2 cut(s) 314, 445
TspDTI ATGAA 7 cut(s) 48, 129, 203, 350, 365, 392, 438
TspGWI ACGGA 2 cut(s) 700, 981
TspMI CCCGGG 1 cut(s) 446
TspRI CASTG 2 cut(s) 314, 445
VneI GTGCAC 1 cut(s) 1125
VpaK11BI GGWCC 3 cut(s) 443, 911, 1010
XapI RAATTY 2 cut(s) 638, 718
XceI RCATGY 3 cut(s) 334, 977, 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 1020
XhoI CTCGAG 1 cut(s) 632
XmaI CCCGGG 1 cut(s) 446
XmiI GTMKAC 3 cut(s) 93, 297, 627
XspI CTAG 2 cut(s) 17, 1199
ZraI GACGTC 2 cut(s) 91, 706
Zsp2I ATGCAT 2 cut(s) 614, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.