Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017486

Physical Location & Seq

Genomic Coordinates Reverse (-)

13089054 .. 13092504

Gene Structure 3451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G162900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAACAAACATTTAGCCAAAGCTTTTGCCCGAAAAATTGTGATCCTGGCGGGCCCTGAATCTCCACACAGTATGCAGAGAAGAATAATATGGAAAACTTACAATTTTACAAGATTTTATTGTCAACTTGATCAAAAGGCGTGTTTTGAATCAGAGAGAACCCTTACCTTAGTAGGTGATTCAGATGATCCTTTGTATGCGGATGTACCGAGACCTCCAAGAAAAATGTCAGAGAGGAAGCCTTATCCTACACCCATGAAGGTTTTGATTCAAAGAGCGAAGGAGGAGAAAGAAGCCCGAAAGGCCCAGCCTTGTAGGATGCTTGAAGAACCTCCTGATAATGGATTGTTGGTCCCTGAATTGGTTGAGGTGGCTCATCAAGTTTACCGAGCTCGACAATCGGTCCTGTTTGGCTTGTCAAAGCTTCTTCAAGTTGTTCCTGTCCAACGGTGCAGGTTTTGCTCCGAAGTTCACATTGGCCATGCGGGTCATGAAATCCGAACTTGCACTGGCCCAAATAGTGGTTTTCGGAGTGCTTCACATGTTTGGAAGAAGGGAGGAGTTCAAGATGTGGTTTCCTTTCCTAAATGCTTCCATCTTTATGATCGTGTTGGAAAACCAAGAGTTGGGCATGACGAGAGGTATCGAATCCCACGGATCCCTGCCATTTTGGAGCTCTGTATACAGGCTGGTCTAGAGATTGACGAGTACCCAACAAAGAGAAGAACGAGACCTGTATATTGTATTGAAGGAAGAATTGTGGACTTTGAGATGGTTAACAAAATGGATGAAATGGATAGAAACTCATATCCTGGGATTGTTGATACCCTAGTAGATCCTGATGTAGGAACTAATATGGAAGAATTGAGAAATTCAGCTTCACCGAGTCATACTAACTGTGTAGATAAATCAAGTGATAAAGTGGGGAAATCTTTGACCGAGTTGAGTAGTACTACAATGGGCTCATGGTTTGAGATGATATCCGGAGCAAAGAATATCATGGAGAAATACAGTGTGAAGACTTGTGGATATTGTTTAGAGGTCCAGGTGGGTCCCAAGGGGCACAAAGTGAGGATGTGCAAGGCATCAAAGCATCAATCTCGTAATGGTTTGCATGCATGGCAAGAAGCAACAATAGAAGATTTTGTAGGTCTGAACTATGTTTGGCATGTCCGAGACGTAAATTGTCCTGCTCTGGATAACAACCTAAAGAGGTATTATGGCAAGGCTCCAGCTGTGGTGGAGCTATGTGTGCAGGCAGGTGCACCTGTTCCGGATGAATATAGGAGTATGATGAGATTAGATGTGGCTTCCCCTGAACGTGATGAGGTTGATCTTGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

449

Amino Acids

50.9

Weight (kDa)

8.69

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61930 AT5G61930
malus_domestica	MD07G1081600.v1.1 MD07G1081900.v1.1
prunus_persica	Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.7G037300_v2.0.a1 Prupe.7G037300_v2.0.a1
pyrus_communis	pycom07g06520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1250
Acc36I	ACCTGC	2 cut(s)	444, 1250
AccB7I	CCANNNNNTGG	2 cut(s)	521, 626
AccI	GTMKAC	1 cut(s)	682
AccIII	TCCGGA	2 cut(s)	983, 1273
AciI	CCGC	3 cut(s)	50, 200, 485
AclWI	GGATC	5 cut(s)	37, 182, 652, 665, 830
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	871
AdeI	CACNNNGTG	1 cut(s)	1069
AfaI	GTAC	3 cut(s)	207, 710, 952
AfiI	CCNNNNNNNGG	5 cut(s)	341, 361, 521, 626, 845
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	6 cut(s)	149, 272, 326, 431, 566, 749
AhdI	GACNNNNNGTC	1 cut(s)	401
AjnI	CCWGG	3 cut(s)	45, 811, 1044
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	7 cut(s)	23, 392, 424, 676, 878, 1235, 1246
AluI	AGCT	7 cut(s)	23, 392, 424, 676, 878, 1235, 1246
Alw21I	GWGCWC	3 cut(s)	394, 678, 1267
Alw26I	GTCTC	3 cut(s)	205, 724, 1170
Alw44I	GTGCAC	1 cut(s)	1263
AlwI	GGATC	5 cut(s)	37, 182, 652, 665, 830
Aor13HI	TCCGGA	2 cut(s)	983, 1273
AoxI	GGCC	4 cut(s)	52, 303, 478, 511
ApaI	GGGCCC	1 cut(s)	56
ApaLI	GTGCAC	1 cut(s)	1263
ApoI	RAATTY	1 cut(s)	871
AspS9I	GGNCC	8 cut(s)	52, 53, 304, 352, 403, 512, 1042, 1052
AsuHPI	GGTGA	2 cut(s)	188, 873
AvaII	GGWCC	4 cut(s)	352, 403, 1042, 1052
BaeGI	GKGCMC	3 cut(s)	56, 1065, 1267
BaeI	ACNNNNGTAYC	2 cut(s)	816, 849
BalI	TGGCCA	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	657
BanII	GRGCYC	4 cut(s)	56, 394, 678, 965
BbsI	GAAGAC	1 cut(s)	1025
Bbv12I	GWGCWC	3 cut(s)	394, 678, 1267
BccI	CCATC	2 cut(s)	603, 766
BcgI	CGANNNNNNTGC	2 cut(s)	1082, 1116
BciT130I	CCWGG	3 cut(s)	47, 813, 1046
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	205, 724, 1170
BfaI	CTAG	2 cut(s)	695, 830
BfuAI	ACCTGC	2 cut(s)	444, 1250
BglI	GCCNNNNNGGC	1 cut(s)	302
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	3 cut(s)	47, 813, 1046
Bme18I	GGWCC	4 cut(s)	352, 403, 1042, 1052
BmeRI	GACNNNNNGTC	1 cut(s)	401
BmgT120I	GGNCC	8 cut(s)	52, 53, 304, 352, 403, 512, 1042, 1052
BmiI	GGNNCC	6 cut(s)	54, 354, 659, 1053, 1054, 1230
BmrFI	CCNGG	3 cut(s)	47, 813, 1046
BmsI	GCATC	3 cut(s)	309, 1094, 1102
BpiI	GAAGAC	1 cut(s)	1025
BpmI	CTGGAG	1 cut(s)	1215
BsaI	GGTCTC	2 cut(s)	205, 724
BsaJI	CCNNGG	3 cut(s)	653, 812, 1056
BsaWI	WCCGGW	2 cut(s)	983, 1273
Bsc4I	CCNNNNNNNGG	5 cut(s)	341, 361, 521, 626, 845
Bse1I	ACTGG	1 cut(s)	514
BseAI	TCCGGA	2 cut(s)	983, 1273
BseBI	CCWGG	3 cut(s)	47, 813, 1046
BseDI	CCNNGG	3 cut(s)	653, 812, 1056
BseGI	GGATG	5 cut(s)	208, 324, 793, 1080, 1282
BseLI	CCNNNNNNNGG	5 cut(s)	341, 361, 521, 626, 845
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	2 cut(s)	299, 573
BseSI	GKGCMC	3 cut(s)	56, 1065, 1267
BseYI	CCCAGC	1 cut(s)	306
BsgI	GTGCAG	2 cut(s)	472, 1274
BshFI	GGCC	4 cut(s)	54, 305, 480, 513
BsiHKAI	GWGCWC	3 cut(s)	394, 678, 1267
BsiSI	CCGG	2 cut(s)	984, 1274
BslFI	GGGAC	2 cut(s)	338, 1038
BslI	CCNNNNNNNGG	5 cut(s)	341, 361, 521, 626, 845
BsmAI	GTCTC	3 cut(s)	205, 724, 1170
BsmBI	CGTCTC	1 cut(s)	1170
BsmFI	GGGAC	2 cut(s)	338, 1038
BsnI	GGCC	4 cut(s)	54, 305, 480, 513
Bso31I	GGTCTC	2 cut(s)	205, 724
Bsp120I	GGGCCC	1 cut(s)	52
Bsp1286I	GDGCHC	6 cut(s)	56, 394, 678, 965, 1065, 1267
Bsp13I	TCCGGA	2 cut(s)	983, 1273
Bsp143I	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
BspACI	CCGC	3 cut(s)	50, 200, 485
BspANI	GGCC	4 cut(s)	54, 305, 480, 513
BspEI	TCCGGA	2 cut(s)	983, 1273
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	6 cut(s)	54, 354, 659, 1053, 1054, 1230
BspMI	ACCTGC	2 cut(s)	444, 1250
BspPI	GGATC	5 cut(s)	37, 182, 652, 665, 830
BspTNI	GGTCTC	2 cut(s)	205, 724
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	653, 812, 1056
BssMI	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
BssNAI	GTATAC	1 cut(s)	683
BssT1I	CCWWGG	1 cut(s)	1056
Bst1107I	GTATAC	1 cut(s)	683
Bst2UI	CCWGG	3 cut(s)	47, 813, 1046
Bst4CI	ACNGT	4 cut(s)	71, 450, 899, 1013
BstAPI	GCANNNNNTGC	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	52, 1116, 1257
BstDEI	CTNAG	1 cut(s)	169
BstDSI	CCRYGG	1 cut(s)	653
BstENI	CCTNNNNNAGG	1 cut(s)	843
BstF5I	GGATG	5 cut(s)	208, 324, 793, 1080, 1282
BstKTI	GATC	7 cut(s)	45, 133, 190, 607, 660, 838, 1336
BstMAI	GTCTC	3 cut(s)	205, 724, 1170
BstMBI	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 459, 1120, 1252
BstNI	CCWGG	3 cut(s)	47, 813, 1046
BstNSI	RCATGY	3 cut(s)	545, 1118, 1172
BstSCI	CCNGG	3 cut(s)	45, 811, 1044
BstSLI	GKGCMC	3 cut(s)	56, 1065, 1267
BstV2I	GAAGAC	1 cut(s)	1025
BstX2I	RGATCY	2 cut(s)	657, 835
BstYI	RGATCY	2 cut(s)	657, 835
BstZ17I	GTATAC	1 cut(s)	683
BsuRI	GGCC	4 cut(s)	54, 305, 480, 513
BtgI	CCRYGG	1 cut(s)	653
BtsCI	GGATG	5 cut(s)	208, 324, 793, 1080, 1282
BtsIMutI	CAGTG	2 cut(s)	507, 1018
BveI	ACCTGC	2 cut(s)	444, 1250
Cac8I	GCNNGC	3 cut(s)	52, 1116, 1257
CciI	TCATGA	1 cut(s)	490
Cfr13I	GGNCC	8 cut(s)	52, 53, 304, 352, 403, 512, 1042, 1052
Csp6I	GTAC	3 cut(s)	206, 709, 951
CviQI	GTAC	3 cut(s)	206, 709, 951
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	7 cut(s)	44, 132, 189, 606, 659, 837, 1335
DpnII	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
DraIII	CACNNNGTG	1 cut(s)	1069
DriI	GACNNNNNGTC	1 cut(s)	401
EaeI	YGGCCR	1 cut(s)	478
Eam1105I	GACNNNNNGTC	1 cut(s)	401
Ecl136II	GAGCTC	2 cut(s)	392, 676
Eco130I	CCWWGG	1 cut(s)	1056
Eco24I	GRGCYC	4 cut(s)	56, 394, 678, 965
Eco31I	GGTCTC	2 cut(s)	205, 724
Eco32I	GATATC	1 cut(s)	981
Eco47I	GGWCC	4 cut(s)	352, 403, 1042, 1052
Eco53kI	GAGCTC	2 cut(s)	392, 676
EcoICRI	GAGCTC	2 cut(s)	392, 676
EcoNI	CCTNNNNNAGG	1 cut(s)	843
EcoO109I	RGGNCCY	2 cut(s)	53, 1052
EcoRII	CCWGG	3 cut(s)	45, 811, 1044
EcoRV	GATATC	1 cut(s)	981
EcoT14I	CCWWGG	1 cut(s)	1056
EcoT22I	ATGCAT	1 cut(s)	1120
EcoT38I	GRGCYC	4 cut(s)	56, 394, 678, 965
ErhI	CCWWGG	1 cut(s)	1056
Esp3I	CGTCTC	1 cut(s)	1170
FaqI	GGGAC	2 cut(s)	338, 1038
FauI	CCCGC	2 cut(s)	43, 478
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	682
FokI	GGATG	5 cut(s)	215, 331, 800, 1087, 1289
FriOI	GRGCYC	4 cut(s)	56, 394, 678, 965
FspBI	CTAG	2 cut(s)	695, 830
GsaI	CCCAGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	1215
HaeIII	GGCC	4 cut(s)	54, 305, 480, 513
HapII	CCGG	2 cut(s)	984, 1274
HincII	GTYRAC	2 cut(s)	125, 778
HindII	GTYRAC	2 cut(s)	125, 778
HindIII	AAGCTT	2 cut(s)	21, 422
HinfI	GANTC	6 cut(s)	59, 149, 179, 268, 648, 886
HpaI	GTTAAC	1 cut(s)	778
HpaII	CCGG	2 cut(s)	984, 1274
HphI	GGTGA	2 cut(s)	188, 873
Hpy166II	GTNNAC	7 cut(s)	125, 385, 472, 683, 763, 778, 1265
Hpy188I	TCNGA	8 cut(s)	154, 184, 232, 466, 500, 531, 1155, 1175
Hpy188III	TCNNGA	8 cut(s)	335, 491, 566, 695, 839, 984, 1196, 1274
Hpy8I	GTNNAC	7 cut(s)	125, 385, 472, 683, 763, 778, 1265
HpyAV	CCTTC	4 cut(s)	253, 274, 547, 743
HpyCH4III	ACNGT	4 cut(s)	71, 450, 899, 1013
HpyCH4IV	ACGT	2 cut(s)	1179, 1321
HpyCH4V	TGCA	8 cut(s)	76, 453, 507, 1080, 1114, 1118, 1255, 1265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 459, 1120, 1252
HpyF3I	CTNAG	1 cut(s)	169
HpySE526I	ACGT	2 cut(s)	1179, 1321
KflI	GGGWCCC	1 cut(s)	1052
Kpn2I	TCCGGA	2 cut(s)	983, 1273
Ksp22I	TGATCA	1 cut(s)	130
KspAI	GTTAAC	1 cut(s)	778
Kzo9I	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
LmnI	GCTCC	5 cut(s)	467, 673, 986, 1234, 1243
LweI	GCATC	3 cut(s)	309, 1094, 1102
MaeI	CTAG	2 cut(s)	695, 830
MaeII	ACGT	2 cut(s)	1179, 1321
MalI	GATC	7 cut(s)	44, 132, 189, 606, 659, 837, 1335
MboI	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
MboII	GAAGA	9 cut(s)	93, 338, 419, 562, 735, 765, 872, 1030, 1151
MflI	RGATCY	2 cut(s)	657, 835
MhlI	GDGCHC	6 cut(s)	56, 394, 678, 965, 1065, 1267
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	7 cut(s)	36, 103, 359, 756, 863, 871, 1183
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	895
MmeI	TCCRAC	2 cut(s)	469, 592
Mox20I	TGGCCA	1 cut(s)	480
Mph1103I	ATGCAT	1 cut(s)	1120
MroI	TCCGGA	2 cut(s)	983, 1273
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	1 cut(s)	600
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	1235
MspI	CCGG	2 cut(s)	984, 1274
MspR9I	CCNGG	3 cut(s)	47, 813, 1046
MvaI	CCWGG	3 cut(s)	47, 813, 1046
MwoI	GCNNNNNNNGC	4 cut(s)	302, 459, 1120, 1252
NdeII	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
NlaIV	GGNNCC	6 cut(s)	54, 354, 659, 1053, 1054, 1230
NsiI	ATGCAT	1 cut(s)	1120
NspI	RCATGY	3 cut(s)	545, 1118, 1172
PaeI	GCATGC	1 cut(s)	1118
PagI	TCATGA	1 cut(s)	490
PaqCI	CACCTGC	1 cut(s)	1250
PciI	ACATGT	1 cut(s)	541
PfeI	GAWTC	5 cut(s)	59, 149, 179, 268, 648
PflMI	CCANNNNNTGG	2 cut(s)	521, 626
PleI	GAGTC	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	894
PpuMI	RGGWCCY	1 cut(s)	1052
PscI	ACATGT	1 cut(s)	541
Psp124BI	GAGCTC	2 cut(s)	394, 678
Psp5II	RGGWCCY	1 cut(s)	1052
Psp6I	CCWGG	3 cut(s)	45, 811, 1044
PspFI	CCCAGC	1 cut(s)	306
PspGI	CCWGG	3 cut(s)	45, 811, 1044
PspN4I	GGNNCC	6 cut(s)	54, 354, 659, 1053, 1054, 1230
PspOMI	GGGCCC	1 cut(s)	52
PspPI	GGNCC	8 cut(s)	52, 53, 304, 352, 403, 512, 1042, 1052
PspPPI	RGGWCCY	1 cut(s)	1052
PsuI	RGATCY	2 cut(s)	657, 835
PvuII	CAGCTG	1 cut(s)	1235
RsaI	GTAC	3 cut(s)	207, 710, 952
RsaNI	GTAC	3 cut(s)	206, 709, 951
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	394, 678
SaqAI	TTAA	1 cut(s)	777
Sau3AI	GATC	7 cut(s)	42, 130, 187, 604, 657, 835, 1333
Sau96I	GGNCC	8 cut(s)	52, 53, 304, 352, 403, 512, 1042, 1052
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	3 cut(s)	47, 813, 1046
SduI	GDGCHC	6 cut(s)	56, 394, 678, 965, 1065, 1267
SfaNI	GCATC	3 cut(s)	309, 1094, 1102
SinI	GGWCC	4 cut(s)	352, 403, 1042, 1052
SmiMI	CAYNNNNRTG	1 cut(s)	600
SphI	GCATGC	1 cut(s)	1118
Sse9I	AATT	7 cut(s)	36, 103, 359, 756, 863, 871, 1183
SsiI	CCGC	3 cut(s)	50, 200, 485
SspMI	CTAG	2 cut(s)	695, 830
SstI	GAGCTC	2 cut(s)	394, 678
StyD4I	CCNGG	3 cut(s)	45, 811, 1044
StyI	CCWWGG	1 cut(s)	1056
TaaI	ACNGT	4 cut(s)	71, 450, 899, 1013
TaiI	ACGT	2 cut(s)	1182, 1324
TaqI	TCGA	2 cut(s)	394, 646
TaqII	GACCGA	2 cut(s)	391, 953
TasI	AATT	7 cut(s)	36, 103, 359, 756, 863, 871, 1183
TatI	WGTACW	1 cut(s)	950
TfiI	GAWTC	5 cut(s)	59, 149, 179, 268, 648
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	2 cut(s)	514, 1018
TspDTI	ATGAA	5 cut(s)	17, 272, 507, 804, 1293
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	2 cut(s)	514, 1018
Van91I	CCANNNNNTGG	2 cut(s)	521, 626
VneI	GTGCAC	1 cut(s)	1263
VpaK11BI	GGWCC	4 cut(s)	352, 403, 1042, 1052
XagI	CCTNNNNNAGG	1 cut(s)	843
XapI	RAATTY	1 cut(s)	871
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	3 cut(s)	545, 1118, 1172
XmiI	GTMKAC	1 cut(s)	682
XspI	CTAG	2 cut(s)	695, 830
ZrmI	AGTACT	1 cut(s)	952
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.