Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0017486

Physical Location & Seq

Genomic Coordinates Reverse (-)

7929402 .. 7933847

Gene Structure 4446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1081600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTCAGAAAGGAAGCCTTACCCTACACCCATGAAGGTTTTGATTCGAAGAGCCAAGGAGGAGAAAGAAGCCCGGAAGGTTGAACCTTGCAGGATGCTTGAAGAATCACCTGATAATGGATTGTTGGTCCCTGAATTGGTTGAGGTAGCTCATCAAGTTTACCAAGCTCGAAAGTCCCTCCTGTTTGGCTTGTCAAAACTTGTTCAAGTTGTTCCTGTCCAACGGTGCAGGTTTTGCTCCGAAGTTCACATTGGACGTGTCAGTCATGAAATCCGAACTTGTACGGGCCCAAACAGTGGTTTTAGGAGTGGGACACATGTTTGGAGGAAGGGAGGAGTTCAACATGTGGTTTCCTTTCCTAAATGTTTCCATCTTTATGACCGTGTTGGAAAACCAAGAGTTGGGCATGATGAGAGGTTTGAAATCCCACGAATCCCTGCCATTTTGGAGCTCTGTATACAGGCTGGTTTAGAGATTGACAAGTACCCAACAAAGAGAAGAACGAGACCTGTATATAGTATCGAAGGAAGAATTGTAGACTTTGAGTCGGTCAACAAAATGGATGATGTGGATAGGAACTCATATTCTGGGATTGTTGATCTCGTAGTACATTCTGATATTAAAACTGATGTTGAGGAATTGAGGAATTCAGATTCACAGAGTGATACCAACCTTGTGGATAAAGCATTACCGAGCGATAAAGTGGGGAAGTCTTTGAGCGAGTTAAGTATTATTACAATGGACTCATGGTTTGAGATGATATTGGGAGCAAAGAAGATCATGGAGAAATACAGTGTGAAGACTTGTGGATATTGTTTAGAGGTTCAGGTAGGTCCCAAGGGGCACAAAGTGAGGATGTGCAAGGCTTCAAAGCATCAATCTCGTAATGGTTTGCATGCTTGGCAAGAAGCAACAATAGACGACCTTGTGGGTCCGAATTATGTTTGGCATGTCCGTGACATAGATGGTCCTGCTCTGGATAACAACCTGAAGAGGTATTACGGGAAGGCTCCAGCTGTGGTGGAGCTATGCGTGCAGGCAGGTGCACCTGTGCCAAATGAATATAGGAGTATGATGAGATTAGATGTAGCTTCTCTAGAGCGTGACGAGGTTGATCTGGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

APO_RNA-bind

Protein Analysis

376

Amino Acids

42.5

Weight (kDa)

8.42

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APO_RNA-bind	PF05634	2 - 180	4.2e-74	APO RNA-binding
APO_RNA-bind	PF05634	226 - 360	2.5e-25	APO RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61930 AT5G61930
malus_domestica	MD07G1081600.v1.1 MD07G1081900.v1.1
prunus_persica	Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.1G162900_v2.0.a1 Prupe.7G037300_v2.0.a1 Prupe.7G037300_v2.0.a1
pyrus_communis	pycom07g06520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1031
AasI	GACNNNNNNGTC	1 cut(s)	261
Acc36I	ACCTGC	2 cut(s)	219, 1031
AccB7I	CCANNNNNTGG	2 cut(s)	296, 401
AccI	GTMKAC	2 cut(s)	457, 537
AcsI	RAATTY	1 cut(s)	646
AcuI	CTGAAG	1 cut(s)	1010
AdeI	CACNNNGTG	2 cut(s)	662, 850
AfaI	GTAC	3 cut(s)	283, 485, 609
AfiI	CCNNNNNNNGG	4 cut(s)	116, 136, 296, 401
AflIII	ACRYGT	3 cut(s)	256, 316, 343
AgsI	TTSAA	6 cut(s)	83, 101, 206, 341, 422, 870
AhdI	GACNNNNNGTC	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	6 cut(s)	149, 167, 451, 1016, 1027, 1091
AluI	AGCT	6 cut(s)	149, 167, 451, 1016, 1027, 1091
Alw21I	GWGCWC	2 cut(s)	453, 1048
Alw26I	GTCTC	1 cut(s)	499
Alw44I	GTGCAC	1 cut(s)	1044
AoxI	GGCC	1 cut(s)	286
ApaI	GGGCCC	1 cut(s)	290
ApaLI	GTGCAC	1 cut(s)	1044
ApoI	RAATTY	1 cut(s)	646
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
AspS9I	GGNCC	6 cut(s)	127, 286, 287, 833, 932, 968
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	99
AsuII	TTCGAA	1 cut(s)	46
AvaII	GGWCC	4 cut(s)	127, 833, 932, 968
BaeGI	GKGCMC	3 cut(s)	290, 846, 1048
BanII	GRGCYC	2 cut(s)	290, 453
BarI	GAAGNNNNNNTAC	2 cut(s)	983, 1015
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	453, 1048
BccI	CCATC	2 cut(s)	378, 959
BcgI	CGANNNNNNTGC	2 cut(s)	863, 897
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	1 cut(s)	1097
BfuAI	ACCTGC	2 cut(s)	219, 1031
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	4 cut(s)	127, 833, 932, 968
BmeRI	GACNNNNNGTC	1 cut(s)	544
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	6 cut(s)	127, 286, 287, 833, 932, 968
BmiI	GGNNCC	5 cut(s)	129, 288, 835, 933, 1011
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	2 cut(s)	84, 883
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	996
Bpu14I	TTCGAA	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	54, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 136, 296, 401
BseDI	CCNNGG	2 cut(s)	54, 837
BseGI	GGATG	3 cut(s)	99, 568, 861
BseLI	CCNNNNNNNGG	4 cut(s)	116, 136, 296, 401
BseRI	GAGGAG	2 cut(s)	74, 348
BseSI	GKGCMC	3 cut(s)	290, 846, 1048
BsgI	GTGCAG	2 cut(s)	247, 1055
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	2 cut(s)	453, 1048
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	4 cut(s)	113, 160, 325, 819
BslI	CCNNNNNNNGG	4 cut(s)	116, 136, 296, 401
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	4 cut(s)	113, 160, 325, 819
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	46
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	4 cut(s)	290, 453, 846, 1048
Bsp143I	GATC	3 cut(s)	598, 777, 1114
BspANI	GGCC	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	5 cut(s)	129, 288, 835, 933, 1011
BspMI	ACCTGC	2 cut(s)	219, 1031
BspQI	GCTCTTC	1 cut(s)	43
BspT104I	TTCGAA	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	54, 837
BssMI	GATC	3 cut(s)	598, 777, 1114
BssNAI	GTATAC	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	54, 837
Bst1107I	GTATAC	1 cut(s)	458
Bst4CI	ACNGT	4 cut(s)	225, 296, 383, 794
Bst6I	CTCTTC	2 cut(s)	43, 986
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	3 cut(s)	897, 1034, 1038
BstF5I	GGATG	3 cut(s)	99, 568, 861
BstKTI	GATC	3 cut(s)	601, 780, 1117
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	3 cut(s)	598, 777, 1114
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 901, 1033
BstNSI	RCATGY	4 cut(s)	320, 347, 899, 953
BstSCI	CCNGG	1 cut(s)	71
BstSLI	GKGCMC	3 cut(s)	290, 846, 1048
BstV2I	GAAGAC	1 cut(s)	806
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstZ17I	GTATAC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	99, 568, 861
BtsIMutI	CAGTG	2 cut(s)	301, 799
BveI	ACCTGC	2 cut(s)	219, 1031
Cac8I	GCNNGC	3 cut(s)	897, 1034, 1038
CciI	TCATGA	1 cut(s)	265
Cfr13I	GGNCC	6 cut(s)	127, 286, 287, 833, 932, 968
Csp6I	GTAC	3 cut(s)	282, 484, 608
CviAII	CATG	9 cut(s)	31, 266, 317, 344, 407, 747, 781, 896, 950
CviQI	GTAC	3 cut(s)	282, 484, 608
DpnI	GATC	3 cut(s)	600, 779, 1116
DpnII	GATC	3 cut(s)	598, 777, 1114
DraIII	CACNNNGTG	2 cut(s)	662, 850
DrdI	GACNNNNNNGTC	1 cut(s)	261
DriI	GACNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	43, 986
Eam1105I	GACNNNNNGTC	1 cut(s)	544
EarI	CTCTTC	2 cut(s)	43, 986
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	54, 837
Eco24I	GRGCYC	2 cut(s)	290, 453
Eco31I	GGTCTC	1 cut(s)	499
Eco47I	GGWCC	4 cut(s)	127, 833, 932, 968
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	1010
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	54, 837
EcoT38I	GRGCYC	2 cut(s)	290, 453
ErhI	CCWWGG	2 cut(s)	54, 837
FaeI	CATG	9 cut(s)	34, 269, 320, 347, 410, 750, 784, 899, 953
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	4 cut(s)	113, 160, 325, 819
FatI	CATG	9 cut(s)	30, 265, 316, 343, 406, 746, 780, 895, 949
FblI	GTMKAC	2 cut(s)	457, 537
FokI	GGATG	3 cut(s)	106, 575, 868
FriOI	GRGCYC	2 cut(s)	290, 453
FspBI	CTAG	1 cut(s)	1097
GsuI	CTGGAG	1 cut(s)	996
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	9 cut(s)	34, 269, 320, 347, 410, 750, 784, 899, 953
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	6 cut(s)	43, 104, 432, 545, 653, 743
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	99
Hpy166II	GTNNAC	6 cut(s)	160, 247, 458, 538, 553, 1046
Hpy188I	TCNGA	6 cut(s)	7, 241, 275, 616, 652, 936
Hpy188III	TCNNGA	3 cut(s)	266, 977, 1097
Hpy8I	GTNNAC	6 cut(s)	160, 247, 458, 538, 553, 1046
HpyAV	CCTTC	5 cut(s)	28, 70, 322, 518, 1000
HpyCH4III	ACNGT	4 cut(s)	225, 296, 383, 794
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	90, 228, 861, 895, 1036, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 901, 1033
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	9 cut(s)	34, 269, 320, 347, 410, 750, 784, 899, 953
Kzo9I	GATC	3 cut(s)	598, 777, 1114
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	5 cut(s)	242, 448, 767, 1015, 1024
LweI	GCATC	2 cut(s)	84, 883
MaeI	CTAG	1 cut(s)	1097
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	956, 1103
MalI	GATC	3 cut(s)	600, 779, 1116
MboI	GATC	3 cut(s)	598, 777, 1114
MboII	GAAGA	7 cut(s)	60, 113, 510, 540, 787, 811, 1003
MhlI	GDGCHC	4 cut(s)	290, 453, 846, 1048
MluCI	AATT	5 cut(s)	134, 531, 638, 646, 937
MlyI	GAGTC	2 cut(s)	554, 737
MmeI	TCCRAC	2 cut(s)	244, 367
MseI	TTAA	2 cut(s)	621, 725
MslI	CAYNNNNRTG	2 cut(s)	375, 954
MspA1I	CMGCKG	1 cut(s)	1016
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	73
MwoI	GCNNNNNNNGC	3 cut(s)	234, 901, 1033
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	3 cut(s)	598, 777, 1114
NlaIII	CATG	9 cut(s)	34, 269, 320, 347, 410, 750, 784, 899, 953
NlaIV	GGNNCC	5 cut(s)	129, 288, 835, 933, 1011
NmuCI	GTSAC	2 cut(s)	956, 1103
NspI	RCATGY	4 cut(s)	320, 347, 899, 953
NspV	TTCGAA	1 cut(s)	46
PaeI	GCATGC	1 cut(s)	899
PagI	TCATGA	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	1031
PciI	ACATGT	2 cut(s)	316, 343
PciSI	GCTCTTC	1 cut(s)	43
PfeI	GAWTC	4 cut(s)	43, 104, 432, 653
PflMI	CCANNNNNTGG	2 cut(s)	296, 401
PleI	GAGTC	2 cut(s)	553, 737
PpsI	GAGTC	2 cut(s)	553, 737
PpuMI	RGGWCCY	1 cut(s)	833
PscI	ACATGT	2 cut(s)	316, 343
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	833
PspN4I	GGNNCC	5 cut(s)	129, 288, 835, 933, 1011
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	6 cut(s)	127, 286, 287, 833, 932, 968
PspPPI	RGGWCCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	1016
RsaI	GTAC	3 cut(s)	283, 485, 609
RsaNI	GTAC	3 cut(s)	282, 484, 608
RseI	CAYNNNNRTG	2 cut(s)	375, 954
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	621, 725
Sau3AI	GATC	3 cut(s)	598, 777, 1114
Sau96I	GGNCC	6 cut(s)	127, 286, 287, 833, 932, 968
SchI	GAGTC	2 cut(s)	554, 737
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	4 cut(s)	290, 453, 846, 1048
SfaNI	GCATC	2 cut(s)	84, 883
SfuI	TTCGAA	1 cut(s)	46
SinI	GGWCC	4 cut(s)	127, 833, 932, 968
SmiMI	CAYNNNNRTG	2 cut(s)	375, 954
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	5 cut(s)	134, 531, 638, 646, 937
SspMI	CTAG	1 cut(s)	1097
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	54, 837
TaaI	ACNGT	4 cut(s)	225, 296, 383, 794
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	46, 169, 522
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	5 cut(s)	134, 531, 638, 646, 937
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	4 cut(s)	43, 104, 432, 653
Tru1I	TTAA	2 cut(s)	621, 725
Tru9I	TTAA	2 cut(s)	621, 725
TscAI	CASTG	2 cut(s)	301, 799
TseFI	GTSAC	2 cut(s)	956, 1103
Tsp45I	GTSAC	2 cut(s)	956, 1103
TspDTI	ATGAA	3 cut(s)	47, 282, 1074
TspGWI	ACGGA	1 cut(s)	944
TspRI	CASTG	2 cut(s)	301, 799
Van91I	CCANNNNNTGG	2 cut(s)	296, 401
VneI	GTGCAC	1 cut(s)	1044
VpaK11BI	GGWCC	4 cut(s)	127, 833, 932, 968
XapI	RAATTY	1 cut(s)	646
XbaI	TCTAGA	1 cut(s)	1096
XceI	RCATGY	4 cut(s)	320, 347, 899, 953
XmiI	GTMKAC	2 cut(s)	457, 537
XspI	CTAG	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.