Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012883

Physical Location & Seq

Genomic Coordinates Reverse (-)

26330746 .. 26332812

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGAAACAGCTTTCGACAAAAGTGACAAGCAATGGTCATGGACAAGACTCATCCTACTTCTTGGGATGGGAAGAGTACGAGAAGAATCCTTATGATGAGATCAAGAACCCTAATGGGATGATCCAGATGGGTCTAGCCGAAAACCAGCTATGTTTCGATCTAATCGAGTCATGGTTAACTAAGAACCCAGACGCGGCAAGTCTCAAGAGGAACGGTCAATCCATTTTCAGAGAGCTTGCTCTATTTCAAGACTATCATGGCATGCCTGAATTCAAAAAAGCTATGGCTGAGTTTATGGAAGAGATAAGAGGAAACCGTGTCACGTTCGATCCAAAAAAGATTGTTTTAGCGGCTGGTTCGACATCTGCGAATGAGACTCTCATGTTTTGCCTTGCAGAGCCTGGCGATGCTTTCCTTTTGCCTACTCCTTACTATCCTGGATTTGATAGAGATCTTAAATGGAGAACCGGAGCAGAGATAGTACCCATTCACTGCTCAAGCTCTAATGGCTTCCAAATCACGGAATCAGCTCTGCAACAAGCTTACCAACAAGCCCAGAAACTTGATCTCAAAGTCAAAGGAGTTCTTGTCACGAATCCATCTAACCCACTTGGCACTGCGTTGACCAGACGTGAACTTAACCTTCTCGTTGACTTCATCACTTCCAAGAACATTCATCTCATTAGCGACGAGATCTATTCAGGCACTATGTTCGGGTTTGAACAGTTCATAAGCGTAATGGATGTCTTGAAAGACAAGAAACTCGAAGACACGGAGGTTTCAAAACGAGTCCACGTCGTTTATAGCCTTTCTAAAGATCTGGGACTTCCTGGTTTCCGTGTGGGAGCGATCTACTCCAACGACGAAATGATCGTTTCAGCAGCTACAAAAATGTCAAGTTTTGGTCTTGTTTCTTCTCAGACACAATACCTTCTCTCTGCATTGCTCTCCGACAAGAAGTTCACTAGCCAATACCTCGAAGAGAACCAGAAACGACTCAAGTCCAGACAGAGACGCCTCGTGTCTGGTCTTGAGTCTGCAGGGATTACTTGCCTGAGAAGCAACGCGGGTTTGTTCTGTTGGGTCGACATGAGACACCTTTTGGACACAAACACATTTGAAGCAGAGCTTGACCTCTGGAAAAAGATTGTTTACAACGTGAAACTAAACATATCACCCGGTTCTTCATGTCACTGCACCGAACCGGGTTGGTTTAGGGTTTGTTTCGCTAATATGAGCGAGGACACACTCGATTTGGCCTTGAAGAGGCTCAAAACTTTCGTAGAATCCACAGACTGTGGACGAATGATATCAAGAAGCAGCCATGAAAGGCTCAAGAGTTTGAGGAAGAAGACAGTCTCTAACTGGGTTTTCCGGGTTTCATGGACCGATCGTGTACCTGATGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006417 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009735 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010468 GO:0010556 GO:0010608 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019222 GO:0019752 GO:0031323 GO:0031326 GO:0032268 GO:0032502 GO:0032787 GO:0034248 GO:0042218 GO:0042221 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051301 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071704 GO:0072330 GO:0080090 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

470

Amino Acids

53.31

Weight (kDa)

7.55

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	41 - 424	4.1e-104	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22810 AT3G49700 AT4G37770 AT5G65800
fragaria_vesca	FvH4_1g18490
malus_domestica	MD02G1190900.v1.1 MD15G1302200.v1.1
prunus_persica	Prupe.6G214400_v2.0.a1
pyrus_communis	pycom02g15530 pycom15g26520
rosa_chinensis	RchiOBHm_Chr2g0109121
rosa_laevigata	RLG00000017713
rosa_multiflora	Rmu_sc0000186.1_g000012
rosa_rugosa	Rorug02G0157200
rosa_samantha	Rh2AG209100 Rh2BG219500 Rh2CG211700 Rh2DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1086
AccII	CGCG	2 cut(s)	194, 1067
AciI	CCGC	3 cut(s)	194, 350, 1067
AclWI	GGATC	2 cut(s)	115, 323
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	1015
AfaI	GTAC	3 cut(s)	77, 483, 1398
AfiI	CCNNNNNNNGG	3 cut(s)	193, 520, 1266
AgsI	TTSAA	7 cut(s)	248, 274, 722, 751, 783, 1121, 1264
AjiI	CACGTC	2 cut(s)	632, 796
AjnI	CCWGG	3 cut(s)	400, 436, 829
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	9 cut(s)	10, 148, 235, 281, 501, 530, 542, 884, 1129
AluI	AGCT	9 cut(s)	10, 148, 235, 281, 501, 530, 542, 884, 1129
Alw26I	GTCTC	5 cut(s)	206, 368, 1006, 1087, 1363
AlwI	GGATC	2 cut(s)	115, 323
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	1 cut(s)	1257
ApeKI	GCWGC	2 cut(s)	881, 1320
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	1386
AsuC2I	CCSGG	3 cut(s)	1179, 1206, 1376
AsuHPI	GGTGA	1 cut(s)	1167
AvaII	GGWCC	1 cut(s)	1386
BauI	CACGAG	1 cut(s)	1019
BbsI	GAAGAC	2 cut(s)	774, 1358
BbvI	GCAGC	2 cut(s)	893, 1332
BccI	CCATC	3 cut(s)	60, 121, 607
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	3 cut(s)	402, 438, 831
BcnI	CCSGG	3 cut(s)	1179, 1206, 1376
BcoDI	GTCTC	5 cut(s)	206, 368, 1006, 1087, 1363
BfaI	CTAG	2 cut(s)	134, 966
BfmI	CTRYAG	1 cut(s)	1038
BglII	AGATCT	3 cut(s)	451, 693, 817
BisI	GCNGC	4 cut(s)	195, 351, 882, 1321
BlsI	GCNGC	4 cut(s)	196, 352, 883, 1322
Bme1390I	CCNGG	6 cut(s)	402, 438, 831, 1179, 1206, 1376
Bme18I	GGWCC	1 cut(s)	1386
BmgBI	CACGTC	2 cut(s)	632, 796
BmgT120I	GGNCC	1 cut(s)	1386
BmrFI	CCNGG	6 cut(s)	402, 438, 831, 1179, 1206, 1376
BmrI	ACTGGG	1 cut(s)	1375
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	1375
BoxI	GACNNNNGTC	1 cut(s)	1000
BpiI	GAAGAC	2 cut(s)	774, 1358
BpuEI	CTTGAG	5 cut(s)	188, 481, 983, 1052, 1319
BpuMI	CCSGG	3 cut(s)	1179, 1206, 1376
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	1015
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 520, 1266
Bse1I	ACTGG	1 cut(s)	1370
Bse3DI	GCAATG	2 cut(s)	37, 941
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	402, 438, 831
BseGI	GGATG	4 cut(s)	50, 71, 123, 748
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	3 cut(s)	193, 520, 1266
BseMI	GCAATG	2 cut(s)	37, 941
BseMII	CTCAG	3 cut(s)	279, 932, 1046
BseNI	ACTGG	1 cut(s)	1370
BseXI	GCAGC	2 cut(s)	893, 1332
BsgI	GTGCAG	1 cut(s)	1180
Bsh1236I	CGCG	2 cut(s)	194, 1067
Bsh1285I	CGRYCG	1 cut(s)	1393
BshFI	GGCC	1 cut(s)	1259
BsiEI	CGRYCG	1 cut(s)	1393
BsiSI	CCGG	4 cut(s)	468, 1179, 1205, 1375
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	3 cut(s)	193, 520, 1266
BsmAI	GTCTC	5 cut(s)	206, 368, 1006, 1087, 1363
BsmBI	CGTCTC	1 cut(s)	1006
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	1 cut(s)	1259
BspACI	CCGC	3 cut(s)	194, 350, 1067
BspANI	GGCC	1 cut(s)	1259
BspCNI	CTCAG	3 cut(s)	280, 931, 1047
BspFNI	CGCG	2 cut(s)	194, 1067
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	2 cut(s)	115, 323
BsrDI	GCAATG	2 cut(s)	37, 941
BsrI	ACTGG	1 cut(s)	1370
BssNI	GRCGYC	1 cut(s)	1015
BssSI	CACGAG	1 cut(s)	1019
Bst2BI	CACGAG	1 cut(s)	1019
Bst2UI	CCWGG	3 cut(s)	402, 438, 831
Bst4CI	ACNGT	5 cut(s)	215, 317, 726, 1298, 1357
Bst6I	CTCTTC	4 cut(s)	66, 294, 975, 1259
BstACI	GRCGYC	1 cut(s)	1015
BstC8I	GCNNGC	2 cut(s)	237, 263
BstDEI	CTNAG	4 cut(s)	180, 288, 918, 1055
BstENI	CCTNNNNNAGG	1 cut(s)	1264
BstF5I	GGATG	4 cut(s)	50, 71, 123, 748
BstFNI	CGCG	2 cut(s)	194, 1067
BstMAI	GTCTC	5 cut(s)	206, 368, 1006, 1087, 1363
BstMCI	CGRYCG	1 cut(s)	1393
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 1059
BstNI	CCWGG	3 cut(s)	402, 438, 831
BstNSI	RCATGY	1 cut(s)	265
BstPAI	GACNNNNGTC	1 cut(s)	1000
BstSCI	CCNGG	6 cut(s)	400, 436, 829, 1177, 1204, 1374
BstSFI	CTRYAG	1 cut(s)	1038
BstUI	CGCG	2 cut(s)	194, 1067
BstV1I	GCAGC	2 cut(s)	893, 1332
BstV2I	GAAGAC	2 cut(s)	774, 1358
BstX2I	RGATCY	3 cut(s)	451, 693, 817
BstYI	RGATCY	3 cut(s)	451, 693, 817
BsuRI	GGCC	1 cut(s)	1259
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	2 cut(s)	632, 796
BtsCI	GGATG	4 cut(s)	50, 71, 123, 748
BtsI	GCAGTG	3 cut(s)	490, 615, 1192
BtsIMutI	CAGTG	3 cut(s)	490, 615, 1192
Cac8I	GCNNGC	2 cut(s)	237, 263
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	1386
CseI	GACGC	2 cut(s)	200, 1023
Csp6I	GTAC	3 cut(s)	76, 482, 1397
CviAII	CATG	9 cut(s)	38, 171, 257, 262, 382, 1090, 1188, 1325, 1383
CviQI	GTAC	3 cut(s)	76, 482, 1397
DdeI	CTNAG	4 cut(s)	180, 288, 918, 1055
Eam1104I	CTCTTC	4 cut(s)	66, 294, 975, 1259
EarI	CTCTTC	4 cut(s)	66, 294, 975, 1259
Eco32I	GATATC	1 cut(s)	1311
Eco47I	GGWCC	1 cut(s)	1386
EcoNI	CCTNNNNNAGG	1 cut(s)	1264
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	3 cut(s)	400, 436, 829
EcoRV	GATATC	1 cut(s)	1311
Esp3I	CGTCTC	1 cut(s)	1006
FaeI	CATG	9 cut(s)	41, 174, 260, 265, 385, 1093, 1191, 1328, 1386
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 1113, 1145
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	9 cut(s)	37, 170, 256, 261, 381, 1089, 1187, 1324, 1382
FauI	CCCGC	1 cut(s)	1060
FblI	GTMKAC	1 cut(s)	1086
Fnu4HI	GCNGC	4 cut(s)	195, 351, 882, 1321
FokI	GGATG	4 cut(s)	37, 78, 130, 755
Fsp4HI	GCNGC	4 cut(s)	195, 351, 882, 1321
FspBI	CTAG	2 cut(s)	134, 966
GluI	GCNGC	4 cut(s)	195, 351, 882, 1321
HaeIII	GGCC	1 cut(s)	1259
HapII	CCGG	4 cut(s)	468, 1179, 1205, 1375
HgaI	GACGC	2 cut(s)	200, 1023
Hin1I	GRCGYC	1 cut(s)	1015
Hin1II	CATG	9 cut(s)	41, 174, 260, 265, 385, 1093, 1191, 1328, 1386
HincII	GTYRAC	4 cut(s)	177, 624, 652, 1087
HindII	GTYRAC	4 cut(s)	177, 624, 652, 1087
HindIII	AAGCTT	1 cut(s)	540
HpaI	GTTAAC	1 cut(s)	177
HpaII	CCGG	4 cut(s)	468, 1179, 1205, 1375
HphI	GGTGA	1 cut(s)	1167
Hpy188I	TCNGA	3 cut(s)	230, 921, 952
Hpy99I	CGWCG	3 cut(s)	692, 800, 866
HpyAV	CCTTC	2 cut(s)	653, 941
HpyCH4III	ACNGT	5 cut(s)	215, 317, 726, 1298, 1357
HpyCH4IV	ACGT	4 cut(s)	323, 631, 795, 1158
HpyCH4V	TGCA	5 cut(s)	395, 535, 941, 1040, 1197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 1059
HpyF3I	CTNAG	4 cut(s)	180, 288, 918, 1055
HpySE526I	ACGT	4 cut(s)	323, 631, 795, 1158
Hsp92I	GRCGYC	1 cut(s)	1015
Hsp92II	CATG	9 cut(s)	41, 174, 260, 265, 385, 1093, 1191, 1328, 1386
KspAI	GTTAAC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	470, 845
Lsp1109I	GCAGC	2 cut(s)	893, 1332
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	134, 966
MaeII	ACGT	4 cut(s)	323, 631, 795, 1158
MaeIII	GTNAC	4 cut(s)	22, 319, 589, 1190
MflI	RGATCY	3 cut(s)	451, 693, 817
MluCI	AATT	1 cut(s)	269
MlyI	GAGTC	6 cut(s)	41, 176, 370, 798, 990, 1043
MmeI	TCCRAC	2 cut(s)	882, 975
MnlI	CCTC	9 cut(s)	201, 302, 769, 986, 1028, 1145, 1234, 1260, 1338
MseI	TTAA	3 cut(s)	176, 456, 639
MspI	CCGG	4 cut(s)	468, 1179, 1205, 1375
MspR9I	CCNGG	6 cut(s)	402, 438, 831, 1179, 1206, 1376
MvaI	CCWGG	3 cut(s)	402, 438, 831
MvnI	CGCG	2 cut(s)	194, 1067
MwoI	GCNNNNNNNGC	2 cut(s)	507, 1059
NciI	CCSGG	3 cut(s)	1179, 1206, 1376
NlaIII	CATG	9 cut(s)	41, 174, 260, 265, 385, 1093, 1191, 1328, 1386
NmuCI	GTSAC	4 cut(s)	22, 319, 589, 1190
NspI	RCATGY	1 cut(s)	265
PaeI	GCATGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 365, 870
PfeI	GAWTC	4 cut(s)	85, 524, 595, 1286
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	196, 352, 883, 1322
Ple19I	CGATCG	1 cut(s)	1393
PleI	GAGTC	6 cut(s)	41, 175, 370, 797, 990, 1042
PpsI	GAGTC	6 cut(s)	41, 175, 370, 797, 990, 1042
PshAI	GACNNNNGTC	1 cut(s)	1000
Psp6I	CCWGG	3 cut(s)	400, 436, 829
PspGI	CCWGG	3 cut(s)	400, 436, 829
PspPI	GGNCC	1 cut(s)	1386
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	3 cut(s)	451, 693, 817
PvuI	CGATCG	1 cut(s)	1393
RsaI	GTAC	3 cut(s)	77, 483, 1398
RsaNI	GTAC	3 cut(s)	76, 482, 1397
SalI	GTCGAC	1 cut(s)	1085
SaqAI	TTAA	3 cut(s)	176, 456, 639
SatI	GCNGC	4 cut(s)	195, 351, 882, 1321
Sau96I	GGNCC	1 cut(s)	1386
SchI	GAGTC	6 cut(s)	41, 176, 370, 798, 990, 1043
ScrFI	CCNGG	6 cut(s)	402, 438, 831, 1179, 1206, 1376
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	1038
SinI	GGWCC	1 cut(s)	1386
SmlI	CTYRAG	5 cut(s)	203, 496, 998, 1031, 1334
SmoI	CTYRAG	5 cut(s)	203, 496, 998, 1031, 1334
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	269
SsiI	CCGC	3 cut(s)	194, 350, 1067
SspMI	CTAG	2 cut(s)	134, 966
StyD4I	CCNGG	6 cut(s)	400, 436, 829, 1177, 1204, 1374
TaaI	ACNGT	5 cut(s)	215, 317, 726, 1298, 1357
TaiI	ACGT	4 cut(s)	326, 634, 798, 1161
TaqI	TCGA	9 cut(s)	14, 156, 165, 327, 359, 765, 978, 1086, 1251
TaqII	GACCGA	1 cut(s)	1403
TasI	AATT	1 cut(s)	269
TauI	GCSGC	2 cut(s)	197, 353
TfiI	GAWTC	4 cut(s)	85, 524, 595, 1286
Tru1I	TTAA	3 cut(s)	176, 456, 639
Tru9I	TTAA	3 cut(s)	176, 456, 639
TscAI	CASTG	3 cut(s)	497, 622, 1199
TseFI	GTSAC	4 cut(s)	22, 319, 589, 1190
TseI	GCWGC	2 cut(s)	881, 1320
Tsp45I	GTSAC	4 cut(s)	22, 319, 589, 1190
TspDTI	ATGAA	7 cut(s)	17, 646, 665, 718, 1176, 1341, 1371
TspGWI	ACGGA	3 cut(s)	536, 788, 827
TspRI	CASTG	3 cut(s)	497, 622, 1199
VpaK11BI	GGWCC	1 cut(s)	1386
XagI	CCTNNNNNAGG	1 cut(s)	1264
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	1086
XspI	CTAG	2 cut(s)	134, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.