AT5G66820

negative regulation of immature T cell proliferation in thymus

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26688943 .. 26691180
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66820.1

Sequence Viewer

Length: 1560 bp
ATGTTCTTTTCAGACATGGAGCGAAAAACCCTAGCGATTACGCCTCCTTCCTTCTTCTTCCACCTTGGAGGAGGAGCATTTGGTTCATCAAAGGCGTTTCATTGTCTTCTCCTTCTCTCATGTCTATTGCTTTCATCAGTCAATACATTGCATAACTTAGCTGAATATGGTTACAACACTGGTTCTGCTGCTATGGAGTTTCAGGGCTTTATTAATGGTGAAGATTCTGGGAGTGTAGCAATCCAGAAATCTGACCAGAATGTTTGTCCTAGTTCACAGCTGTTTTGTTTCCTTTCAGCTTTAGGATCAGAGAATCGGTCTGATCCATTTGTGTTGGCTTGTCCCAAAGAATCACGGAGTAGCTCTGCTCTGATCAGAAAAAATCTATCTGGTGTTGTGTGGCTATCTCTGAAGCCTGTCCACATCATAGAGTTTCAGCCATTTACTGGATTCTTTCACATTGGAGACACTTGTTACGAGCCTATGTCCAAAGAGCTCTATACTAAGAAGACCACAAGGGAGTTAAGTATTACGGTTTCAGGAAAACAATGTGGAGGAAATGGTTTTATGGTGAACCATCCATGTGAAGGATTTTCATTAGAACCAGGGGATTCCATAAAGTTTCTCTTTTTCTACCAGAGTGAACTCTCTTGGGCATCTGGAGTTGCTGTTTTTGCAGTACCTATGAAGGCGACCGCACCTGTTTTGATGCTTAGTCTCTACAAAAAACCGGTCTTTTGGGTGCGGACGAAGAAATTCGCAATTGCGGTTCTTATTGCTGCAGCTCTACTCATTCTGATATTTTGCTTCAATGATCACTTCATCGAGGAGAACAACAAGAGAAACAATAGCAACCACATGGAGTCGAGAGAAGTTGAGAAACCATCTACGATCACAATATCCCCTGAAATGGATTCTCTGCTAAGATCCATAAGCAAAGAAAGCCTGCAAGTGTTCGATGAGGTTCCCAAGAACAGCAGCAGCGTTAAGCCAGTTGCTTCTTCACACGAAGAAGAAGCATCAGAAGCTGTGAATCTCACTGTAAAGACAGCGAAAGACAAGAAGAGGCGCCGTAACAAGAAAAAGAAGAAAGGAGGAATCAACGGATTAACACCAGAGTGCACAGATGTTTCAAGCAGTTACAGCGGAAACTCAACTCCTAGGTCTCCAATATCACCAGAACCACCTACTACTCAAGCCGCAACGAAGCTAGTAAAGCCTCCTACTAAACCGGTCCTATCGCACTCAGCAACGTTTCCGGTTTCAGGGGTTAAGTCAATGATCATACAACGAAGCTCACTGGCTCCAAATGTGAGAGCACCTGGAGCGAAATCAAGAACCGAAGTGAAAGAAGAGAAAGCGAAAGAGTATAGGTACTATGATATCTGGGGAGATCACTTGACAGGGCTTAATTTGATGGATAAGTTAAAGGAAGTGAGAGAAGGTAAAAGCTCAGGTTTTGATGGAGAGGAGTGTGAGAGTTTCTTTGTTAAGGGTCCTCAGAACTTGTTAGCAGACTCTCACACCAGGTTTGTAAGTTTCTGTAACCAATGGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

519

Amino Acids

57.25

Weight (kDa)

8.82

Isoelectric Point (pI)

51.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ig_TMEM131L_5 PF24501 176 - 217 6.2e-07 TMEM131L fifth Ig-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012944)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1068
AccB7I CCANNNNNTGG 1 cut(s) 446
AciI CCGC 5 cut(s) 696, 745, 767, 1146, 1200
AclI AACGTT 1 cut(s) 1253
AclWI GGATC 3 cut(s) 313, 317, 921
AcsI RAATTY 1 cut(s) 755
AcuI CTGAAG 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 1069
AfaI GTAC 2 cut(s) 681, 1376
AfiI CCNNNNNNNGG 4 cut(s) 446, 587, 910, 1265
AgeI ACCGGT 2 cut(s) 730, 1231
AgsI TTSAA 2 cut(s) 811, 1134
AjnI CCWGG 3 cut(s) 604, 1321, 1526
AleI CACNNNNGTG 1 cut(s) 1117
Alw21I GWGCWC 3 cut(s) 498, 1124, 1321
Alw26I GTCTC 3 cut(s) 459, 722, 1170
Alw44I GTGCAC 1 cut(s) 1120
AlwI GGATC 3 cut(s) 313, 317, 921
AlwNI CAGNNNCTG 1 cut(s) 1028
ApaLI GTGCAC 1 cut(s) 1120
ApeKI GCWGC 5 cut(s) 188, 779, 782, 978, 981
ApoI RAATTY 1 cut(s) 755
ArsI GACNNNNNNTTYG 2 cut(s) 717, 749
AseI ATTAAT 1 cut(s) 213
AsiGI ACCGGT 2 cut(s) 730, 1231
Asp700I GAANNNNTTC 1 cut(s) 755
AspA2I CCTAGG 1 cut(s) 1160
AspLEI GCGC 1 cut(s) 1071
AspS9I GGNCC 2 cut(s) 1234, 1496
AsuHPI GGTGA 3 cut(s) 230, 583, 1167
AvaII GGWCC 2 cut(s) 1234, 1496
AvrII CCTAGG 1 cut(s) 1160
BaeGI GKGCMC 1 cut(s) 1124
BanI GGYRCC 1 cut(s) 1068
BanII GRGCYC 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 98, 515
Bbv12I GWGCWC 3 cut(s) 498, 1124, 1321
BbvI GCAGC 5 cut(s) 175, 766, 794, 990, 993
BccI CCATC 4 cut(s) 585, 892, 1411, 1457
BceAI ACGGC 1 cut(s) 1056
BciT130I CCWGG 3 cut(s) 606, 1323, 1528
BclI TGATCA 3 cut(s) 372, 814, 1281
BcoDI GTCTC 3 cut(s) 459, 722, 1170
BfaI CTAG 4 cut(s) 32, 270, 1161, 1211
BfmI CTRYAG 1 cut(s) 780
BfoI RGCGCY 1 cut(s) 1072
BisI GCNGC 6 cut(s) 189, 780, 783, 979, 982, 1200
BlnI CCTAGG 1 cut(s) 1160
BlsI GCNGC 6 cut(s) 190, 781, 784, 980, 983, 1201
Bme1390I CCNGG 3 cut(s) 606, 1323, 1528
Bme18I GGWCC 2 cut(s) 1234, 1496
BmgT120I GGNCC 2 cut(s) 1234, 1496
BmiI GGNNCC 4 cut(s) 966, 1070, 1305, 1497
BmrFI CCNGG 3 cut(s) 606, 1323, 1528
BmsI GCATC 3 cut(s) 665, 699, 1028
BpiI GAAGAC 2 cut(s) 98, 515
BpmI CTGGAG 2 cut(s) 681, 1344
Bpu10I CCTNAGC 1 cut(s) 1453
BpuEI CTTGAG 1 cut(s) 1179
BsaHI GRCGYC 1 cut(s) 1069
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 3 cut(s) 64, 605, 1160
BsaWI WCCGGW 3 cut(s) 730, 1231, 1258
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 4 cut(s) 446, 587, 910, 1265
Bse118I RCCGGY 2 cut(s) 730, 1231
Bse1I ACTGG 4 cut(s) 184, 451, 992, 1305
Bse3DI GCAATG 1 cut(s) 146
BseBI CCWGG 3 cut(s) 606, 1323, 1528
BseDI CCNNGG 3 cut(s) 64, 605, 1160
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 4 cut(s) 446, 587, 910, 1265
BseMI GCAATG 1 cut(s) 146
BseMII CTCAG 3 cut(s) 1260, 1467, 1514
BseNI ACTGG 4 cut(s) 184, 451, 992, 1305
BseRI GAGGAG 4 cut(s) 84, 87, 842, 1484
BseSI GKGCMC 1 cut(s) 1124
BseXI GCAGC 5 cut(s) 175, 766, 794, 990, 993
Bsh1285I CGRYCG 1 cut(s) 696
BshNI GGYRCC 1 cut(s) 1068
BshTI ACCGGT 2 cut(s) 730, 1231
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 3 cut(s) 498, 1124, 1321
BsiSI CCGG 3 cut(s) 731, 1232, 1259
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 4 cut(s) 446, 587, 910, 1265
BsmAI GTCTC 3 cut(s) 459, 722, 1170
BsmFI GGGAC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 1170
Bsp1286I GDGCHC 3 cut(s) 498, 1124, 1321
Bsp143I GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
BspACI CCGC 5 cut(s) 696, 745, 767, 1146, 1200
BspCNI CTCAG 3 cut(s) 1259, 1466, 1513
BspLI GGNNCC 4 cut(s) 966, 1070, 1305, 1497
BspMAI CTGCAG 1 cut(s) 784
BspPI GGATC 3 cut(s) 313, 317, 921
BspT107I GGYRCC 1 cut(s) 1068
BspTNI GGTCTC 1 cut(s) 1170
BsrDI GCAATG 1 cut(s) 146
BsrFI RCCGGY 2 cut(s) 730, 1231
BsrI ACTGG 4 cut(s) 184, 451, 992, 1305
BssAI RCCGGY 2 cut(s) 730, 1231
BssECI CCNNGG 3 cut(s) 64, 605, 1160
BssMI GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
BssNI GRCGYC 1 cut(s) 1069
BssT1I CCWWGG 2 cut(s) 64, 1160
Bst2UI CCWGG 3 cut(s) 606, 1323, 1528
Bst4CI ACNGT 2 cut(s) 535, 1042
Bst6I CTCTTC 2 cut(s) 1058, 1347
BstACI GRCGYC 1 cut(s) 1069
BstC8I GCNNGC 1 cut(s) 947
BstDEI CTNAG 7 cut(s) 157, 504, 713, 923, 1246, 1453, 1500
BstF5I GGATG 1 cut(s) 577
BstH2I RGCGCY 1 cut(s) 1072
BstHHI GCGC 1 cut(s) 1071
BstKTI GATC 8 cut(s) 308, 325, 375, 817, 894, 929, 1284, 1396
BstMAI GTCTC 3 cut(s) 459, 722, 1170
BstMBI GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 6 cut(s) 674, 942, 1025, 1143, 1216, 1325
BstNI CCWGG 3 cut(s) 606, 1323, 1528
BstSCI CCNGG 3 cut(s) 604, 1321, 1526
BstSFI CTRYAG 1 cut(s) 780
BstSLI GKGCMC 1 cut(s) 1124
BstV1I GCAGC 5 cut(s) 175, 766, 794, 990, 993
BstV2I GAAGAC 2 cut(s) 98, 515
BstX2I RGATCY 1 cut(s) 926
BstYI RGATCY 1 cut(s) 926
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 3 cut(s) 177, 1038, 1298
Cac8I GCNNGC 1 cut(s) 947
CaiI CAGNNNCTG 1 cut(s) 1028
CfoI GCGC 1 cut(s) 1071
Cfr10I RCCGGY 2 cut(s) 730, 1231
Cfr13I GGNCC 2 cut(s) 1234, 1496
CsiI ACCWGGT 1 cut(s) 1526
Csp6I GTAC 2 cut(s) 680, 1375
CspAI ACCGGT 2 cut(s) 730, 1231
CviAII CATG 4 cut(s) 16, 120, 582, 859
CviQI GTAC 2 cut(s) 680, 1375
DdeI CTNAG 7 cut(s) 157, 504, 713, 923, 1246, 1453, 1500
DinI GGCGCC 1 cut(s) 1070
DpnI GATC 8 cut(s) 307, 324, 374, 816, 893, 928, 1283, 1395
DpnII GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
Eam1104I CTCTTC 2 cut(s) 1058, 1347
EarI CTCTTC 2 cut(s) 1058, 1347
Ecl136II GAGCTC 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 64, 1160
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 1170
Eco32I GATATC 1 cut(s) 1384
Eco47I GGWCC 2 cut(s) 1234, 1496
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 1496
EcoRII CCWGG 3 cut(s) 604, 1321, 1526
EcoRV GATATC 1 cut(s) 1384
EcoT14I CCWWGG 2 cut(s) 64, 1160
EcoT38I GRGCYC 1 cut(s) 498
EgeI GGCGCC 1 cut(s) 1070
EheI GGCGCC 1 cut(s) 1070
ErhI CCWWGG 2 cut(s) 64, 1160
FaeI CATG 4 cut(s) 19, 123, 585, 862
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FaqI GGGAC 1 cut(s) 327
FatI CATG 4 cut(s) 15, 119, 581, 858
FbaI TGATCA 3 cut(s) 372, 814, 1281
Fnu4HI GCNGC 6 cut(s) 189, 780, 783, 979, 982, 1200
FokI GGATG 1 cut(s) 564
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 6 cut(s) 189, 780, 783, 979, 982, 1200
FspBI CTAG 4 cut(s) 32, 270, 1161, 1211
GlaI GCGC 1 cut(s) 1070
GluI GCNGC 6 cut(s) 189, 780, 783, 979, 982, 1200
GsuI CTGGAG 2 cut(s) 681, 1344
HaeII RGCGCY 1 cut(s) 1072
HapII CCGG 3 cut(s) 731, 1232, 1259
HhaI GCGC 1 cut(s) 1071
Hin1I GRCGYC 1 cut(s) 1069
Hin1II CATG 4 cut(s) 19, 123, 585, 862
Hin6I GCGC 1 cut(s) 1069
HinP1I GCGC 1 cut(s) 1069
HpaII CCGG 3 cut(s) 731, 1232, 1259
HphI GGTGA 3 cut(s) 230, 583, 1167
Hpy166II GTNNAC 5 cut(s) 275, 421, 574, 644, 1122
Hpy188III TCNNGA 5 cut(s) 244, 540, 660, 867, 1335
Hpy8I GTNNAC 5 cut(s) 275, 421, 574, 644, 1122
HpyAV CCTTC 6 cut(s) 57, 61, 122, 581, 682, 1436
HpyCH4III ACNGT 2 cut(s) 535, 1042
HpyCH4IV ACGT 1 cut(s) 1253
HpyCH4V TGCA 5 cut(s) 151, 677, 782, 949, 1122
HpyF10VI GCNNNNNNNGC 6 cut(s) 674, 942, 1025, 1143, 1216, 1325
HpyF3I CTNAG 7 cut(s) 157, 504, 713, 923, 1246, 1453, 1500
HpySE526I ACGT 1 cut(s) 1253
Hsp92I GRCGYC 1 cut(s) 1069
Hsp92II CATG 4 cut(s) 19, 123, 585, 862
HspAI GCGC 1 cut(s) 1069
KasI GGCGCC 1 cut(s) 1068
Ksp22I TGATCA 3 cut(s) 372, 814, 1281
Kzo9I GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
LmnI GCTCC 4 cut(s) 19, 74, 1309, 1325
Lsp1109I GCAGC 5 cut(s) 175, 766, 794, 990, 993
LweI GCATC 3 cut(s) 665, 699, 1028
MabI ACCWGGT 1 cut(s) 1526
MaeI CTAG 4 cut(s) 32, 270, 1161, 1211
MaeII ACGT 1 cut(s) 1253
MaeIII GTNAC 5 cut(s) 170, 473, 1073, 1139, 1544
MalI GATC 8 cut(s) 307, 324, 374, 816, 893, 928, 1283, 1395
MboI GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 926
MhlI GDGCHC 3 cut(s) 498, 1124, 1321
MluCI AATT 3 cut(s) 755, 762, 1411
Mly113I GGCGCC 1 cut(s) 1069
MlyI GAGTC 2 cut(s) 872, 1511
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 8 cut(s) 213, 524, 987, 1109, 1272, 1410, 1427, 1491
MslI CAYNNNNRTG 2 cut(s) 582, 1117
MspA1I CMGCKG 2 cut(s) 280, 1146
MspI CCGG 3 cut(s) 731, 1232, 1259
MspR9I CCNGG 3 cut(s) 606, 1323, 1528
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 3 cut(s) 606, 1323, 1528
MwoI GCNNNNNNNGC 6 cut(s) 674, 942, 1025, 1143, 1216, 1325
NarI GGCGCC 1 cut(s) 1069
NdeII GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
NlaIII CATG 4 cut(s) 19, 123, 585, 862
NlaIV GGNNCC 4 cut(s) 966, 1070, 1305, 1497
OliI CACNNNNGTG 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 8 cut(s) 224, 313, 350, 450, 611, 914, 1033, 1098
PflMI CCANNNNNTGG 1 cut(s) 446
PinAI ACCGGT 2 cut(s) 730, 1231
PkrI GCNGC 6 cut(s) 190, 781, 784, 980, 983, 1201
PleI GAGTC 2 cut(s) 871, 1511
PluTI GGCGCC 1 cut(s) 1072
PpsI GAGTC 2 cut(s) 871, 1511
PpuMI RGGWCCY 1 cut(s) 1496
PshBI ATTAAT 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 498
Psp1406I AACGTT 1 cut(s) 1253
Psp5II RGGWCCY 1 cut(s) 1496
Psp6I CCWGG 3 cut(s) 604, 1321, 1526
PspGI CCWGG 3 cut(s) 604, 1321, 1526
PspN4I GGNNCC 4 cut(s) 966, 1070, 1305, 1497
PspPI GGNCC 2 cut(s) 1234, 1496
PspPPI RGGWCCY 1 cut(s) 1496
PstI CTGCAG 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 681, 1376
RsaNI GTAC 2 cut(s) 680, 1375
RseI CAYNNNNRTG 2 cut(s) 582, 1117
SacI GAGCTC 1 cut(s) 498
SaqAI TTAA 8 cut(s) 213, 524, 987, 1109, 1272, 1410, 1427, 1491
SatI GCNGC 6 cut(s) 189, 780, 783, 979, 982, 1200
Sau3AI GATC 8 cut(s) 305, 322, 372, 814, 891, 926, 1281, 1393
Sau96I GGNCC 2 cut(s) 1234, 1496
SchI GAGTC 2 cut(s) 872, 1511
ScrFI CCNGG 3 cut(s) 606, 1323, 1528
SduI GDGCHC 3 cut(s) 498, 1124, 1321
SexAI ACCWGGT 1 cut(s) 1526
SfaNI GCATC 3 cut(s) 665, 699, 1028
SfcI CTRYAG 1 cut(s) 780
SfoI GGCGCC 1 cut(s) 1070
SinI GGWCC 2 cut(s) 1234, 1496
SmiMI CAYNNNNRTG 2 cut(s) 582, 1117
SmlI CTYRAG 1 cut(s) 1194
SmoI CTYRAG 1 cut(s) 1194
Sse9I AATT 3 cut(s) 755, 762, 1411
SsiI CCGC 5 cut(s) 696, 745, 767, 1146, 1200
SspDI GGCGCC 1 cut(s) 1068
SspMI CTAG 4 cut(s) 32, 270, 1161, 1211
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 3 cut(s) 604, 1321, 1526
StyI CCWWGG 2 cut(s) 64, 1160
TaaI ACNGT 2 cut(s) 535, 1042
TaiI ACGT 1 cut(s) 1256
TaqI TCGA 3 cut(s) 825, 866, 957
TaqII GACCGA 1 cut(s) 306
TasI AATT 3 cut(s) 755, 762, 1411
TauI GCSGC 1 cut(s) 1202
TfiI GAWTC 8 cut(s) 224, 313, 350, 450, 611, 914, 1033, 1098
Tru1I TTAA 8 cut(s) 213, 524, 987, 1109, 1272, 1410, 1427, 1491
Tru9I TTAA 8 cut(s) 213, 524, 987, 1109, 1272, 1410, 1427, 1491
TscAI CASTG 3 cut(s) 184, 1045, 1305
TseI GCWGC 5 cut(s) 188, 779, 782, 978, 981
TspDTI ATGAA 6 cut(s) 75, 89, 123, 585, 701, 811
TspGWI ACGGA 2 cut(s) 370, 1119
TspRI CASTG 3 cut(s) 184, 1045, 1305
Van91I CCANNNNNTGG 1 cut(s) 446
VneI GTGCAC 1 cut(s) 1120
VpaK11BI GGWCC 2 cut(s) 1234, 1496
VspI ATTAAT 1 cut(s) 213
XapI RAATTY 1 cut(s) 755
XmaJI CCTAGG 1 cut(s) 1160
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 4 cut(s) 32, 270, 1161, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.