Rorug02G0125200

Transmembrane protein 131-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012944
Physical Location & Seq
Forward (+)
10795530 .. 10795976
447 bp
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UTR
Exon/CDS
Intron
Rorug02G0125200.1

Sequence Viewer

Length: 447 bp
ATGGCATTCATGCAAGCGGAAGAATTCCTCTTGGCTCGTCACATGGCCCCTTCAGTTCTACAGCATTCTCCAGTTGTTCATAACTCTGTTCCACAAACATGGTTTCCTCCTGCTCTTGGTTCTTTAAAAATTAATACAGATGCAACTTGGAACTCTGAGTCTTTGTGTTGTGGTCTTGTTGCGCTTCTCAGAGATTCTTCAGGTACTTTTCTCAATGGTGTGGTCTCAGTGGGTAAGGCTACCTTGGCGGAGGCAGCGGAGGCTAAAGTGGTTCTTCTTAGCCCCAATTTGGCAAAAACTGAGTCCATTCTATCCTTCTCTCTTGAAGCTGATTGTCTCCCCTTAATCTCAGCTTTGAAATCCTCTAAGGGATCAATCTCTTGGTCTACACTCTCTTGGTTTCATCAAATCAAGTCTTTGGCTGGTTCTTTCTCTTCTGTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM131_like

Protein Analysis

148

Amino Acids

15.75

Weight (kDa)

6.39

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 45 - 147 4.3e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012944)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66820
fragaria_vesca FvH4_1g15710 FvH4_1g15710
malus_domestica MD02G1169100.v1.1 MD15G1281500.v1.1
prunus_persica Prupe.7G136200_v2.0.a1
pyrus_communis pycom02g13580 pycom15g24460
rosa_chinensis RchiOBHm_Chr2g0105021
rosa_laevigata RLG00000017390
rosa_multiflora Rmu_sc0000641.1_g000023
rosa_roxburghii Rroxscaffold_2G00138570
rosa_rugosa Rorug02G0125200
rosa_samantha Rh2AG175500 Rh2BG183600 Rh2CG180200 Rh2DG181900
rosa_wichuraiana Rw2G013800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 386
AciI CCGC 3 cut(s) 17, 248, 257
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 2 cut(s) 36, 183
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 116, 289
AgsI TTSAA 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 329, 353
AluI AGCT 2 cut(s) 329, 353
Alw26I GTCTC 2 cut(s) 229, 341
AlwI GGATC 1 cut(s) 379
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 23
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AseI ATTAAT 1 cut(s) 132
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 229, 341
BfaI CTAG 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 289
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 116, 289
BseMII CTCAG 5 cut(s) 147, 202, 240, 291, 363
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 266
BshFI GGCC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 116, 289
BsmAI GTCTC 2 cut(s) 229, 341
BsmI GAATGC 2 cut(s) 5, 64
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 229
Bsp143I GATC 1 cut(s) 371
BspACI CCGC 3 cut(s) 17, 248, 257
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 5 cut(s) 148, 201, 239, 292, 362
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 439
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 7 cut(s) 156, 188, 226, 278, 300, 349, 366
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 2 cut(s) 229, 341
BstMBI GATC 1 cut(s) 371
BstMWI GCNNNNNNNGC 3 cut(s) 245, 254, 260
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 204
CviAII CATG 3 cut(s) 10, 43, 99
CviJI RGCY 8 cut(s) 35, 47, 239, 263, 282, 329, 353, 422
CviKI_1 RGCY 8 cut(s) 35, 47, 239, 263, 282, 329, 353, 422
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 7 cut(s) 156, 188, 226, 278, 300, 349, 366
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
DraI TTTAAA 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
EciI GGCGGA 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 243
Eco31I GGTCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 36, 183
EcoRI GAATTC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 3 cut(s) 13, 46, 102
FaiI YATR 4 cut(s) 11, 44, 81, 100
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 258, 290
FatI CATG 3 cut(s) 9, 42, 98
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 1 cut(s) 445
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 47
HhaI GCGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 13, 46, 102
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 3 cut(s) 158, 194, 302
Hpy166II GTNNAC 2 cut(s) 387, 442
Hpy188I TCNGA 2 cut(s) 157, 191
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 2 cut(s) 387, 442
HpyAV CCTTC 2 cut(s) 60, 325
HpyCH4V TGCA 2 cut(s) 13, 143
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 254, 260
HpyF3I CTNAG 7 cut(s) 156, 188, 226, 278, 300, 349, 366
Hsp92II CATG 3 cut(s) 13, 46, 102
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 1 cut(s) 371
LpnPI CCDG 4 cut(s) 84, 123, 186, 408
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 4 cut(s) 32, 189, 266, 426
MluCI AATT 3 cut(s) 23, 129, 286
MlyI GAGTC 2 cut(s) 167, 311
MnlI CCTC 5 cut(s) 38, 117, 244, 253, 373
MseI TTAA 3 cut(s) 125, 132, 344
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 257
Mva1269I GAATGC 2 cut(s) 5, 64
MwoI GCNNNNNNNGC 3 cut(s) 245, 254, 260
NdeII GATC 1 cut(s) 371
NlaIII CATG 3 cut(s) 13, 46, 102
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 38
PctI GAATGC 2 cut(s) 5, 64
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 2 cut(s) 166, 310
PpsI GAGTC 2 cut(s) 166, 310
PshBI ATTAAT 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 97
SaqAI TTAA 3 cut(s) 125, 132, 344
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 1 cut(s) 371
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 2 cut(s) 167, 311
SetI ASST 4 cut(s) 205, 245, 331, 355
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 3 cut(s) 23, 129, 286
SsiI CCGC 3 cut(s) 17, 248, 257
SspMI CTAG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 243
TasI AATT 3 cut(s) 23, 129, 286
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 3 cut(s) 125, 132, 344
Tru9I TTAA 3 cut(s) 125, 132, 344
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 68, 392
TspRI CASTG 1 cut(s) 234
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 386
XspI CTAG 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.