Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020970

Physical Location & Seq

Genomic Coordinates Forward (+)

35751 .. 35939

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTGATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTATTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTTATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Ycf9

Protein Analysis

62

Amino Acids

6.57

Weight (kDa)

5.59

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf9	PF01737	5 - 61	2.9e-23	YCF9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00300
malus_domestica	MD11G1068400.v1.1
prunus_persica	Prupe.2G104500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491831 RchiOBHm_CPg0502301

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	69, 130
Alw26I	GTCTC	1 cut(s)	90
AseI	ATTAAT	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	145
BccI	CCATC	1 cut(s)	86
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstMAI	GTCTC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstV2I	GAAGAC	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	176
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	68, 129
CviQI	GTAC	2 cut(s)	68, 129
Esp3I	CGTCTC	1 cut(s)	90
FaiI	YATR	1 cut(s)	139
HgaI	GACGC	1 cut(s)	72
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	89, 186
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
LpnPI	CCDG	2 cut(s)	102, 111
MaeIII	GTNAC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	145
MfeI	CAATTG	1 cut(s)	17
MluCI	AATT	3 cut(s)	17, 36, 172
MseI	TTAA	2 cut(s)	35, 171
MslI	CAYNNNNRTG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	35
RsaI	GTAC	2 cut(s)	69, 130
RsaNI	GTAC	2 cut(s)	68, 129
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	2 cut(s)	35, 171
SgeI	CNNG	5 cut(s)	83, 101, 114, 138, 169
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	17, 36, 172
TaqI	TCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	17, 36, 172
Tru1I	TTAA	2 cut(s)	35, 171
Tru9I	TTAA	2 cut(s)	35, 171
TspDTI	ATGAA	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.