MD11G1068400.v1.1

Photosystem II reaction center protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0020970
Physical Location & Seq
Forward (+)
5894309 .. 5894614
306 bp
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UTR
Exon/CDS
Intron
MD11G1068400.v1.1.491

Sequence Viewer

Length: 306 bp
ATGGTAAAATCCTTACATGATGCTTTTTTTATTTTTTTTTATTTTTTTACAATTTTTGGGCTGATAAAGGGATCAAATGGTATAATTCTTTTGTTGGTAGATTGGAAGATTAGAAACATGACTATTGCTTTCCAGTTGGCTGTTTTTGCATTAATTGCTACTTCATTAATCTTACTGATTAGTGTACCTATTGTATTTGCTTCTCCTAAGGGTTGGTCGGATAACAAAAATGTTCTATTTTCCAACACATCATTATGGATTGGATTAGTCTTTCTGGTGGGTATCCTTAATTCTCTCATCTCTTGA

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

9.7

Isoelectric Point (pI)

21.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf9 PF01737 44 - 100 2.6e-22 YCF9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020970)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00300
malus_domestica MD11G1068400.v1.1
prunus_persica Prupe.2G104500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0491831 RchiOBHm_CPg0502301

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 79
AfaI GTAC 1 cut(s) 186
AlwI GGATC 1 cut(s) 79
AseI ATTAAT 2 cut(s) 152, 167
AxyI CCTNAGG 1 cut(s) 207
BciVI GTATCC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 293
BmsI GCATC 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 133
Bse21I CCTNAGG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 133
Bsp143I GATC 1 cut(s) 71
BspPI GGATC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 146, 155
Bsu36I CCTNAGG 1 cut(s) 207
BsuI GTATCC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 17, 118
CviJI RGCY 2 cut(s) 61, 140
CviKI_1 RGCY 2 cut(s) 61, 140
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 207
FaeI CATG 2 cut(s) 20, 121
FaiI YATR 4 cut(s) 18, 83, 119, 256
FatI CATG 2 cut(s) 16, 117
Hin1II CATG 2 cut(s) 20, 121
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 303
Hpy8I GTNNAC 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 155
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 2 cut(s) 20, 121
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 146, 260
LweI GCATC 1 cut(s) 10
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 1 cut(s) 118
MluCI AATT 4 cut(s) 51, 84, 153, 289
MmeI TCCRAC 2 cut(s) 198, 267
MseI TTAA 3 cut(s) 152, 167, 288
MslI CAYNNNNRTG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 146, 155
NdeII GATC 1 cut(s) 71
NlaIII CATG 2 cut(s) 20, 121
PshBI ATTAAT 2 cut(s) 152, 167
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 3 cut(s) 152, 167, 288
Sau3AI GATC 1 cut(s) 71
SetI ASST 1 cut(s) 190
SfaNI GCATC 1 cut(s) 10
SgeI CNNG 4 cut(s) 29, 130, 145, 287
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 4 cut(s) 51, 84, 153, 289
TasI AATT 4 cut(s) 51, 84, 153, 289
Tru1I TTAA 3 cut(s) 152, 167, 288
Tru9I TTAA 3 cut(s) 152, 167, 288
TspDTI ATGAA 1 cut(s) 153
VspI ATTAAT 2 cut(s) 152, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.