Prupe.2G104500_v2.0.a1

Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
16153577 .. 16154131
555 bp
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UTR
Exon/CDS
Intron
Prupe.2G104500.1

Sequence Viewer

Length: 189 bp
ATGACTATTGCTTTCCAATTGGCTGTTTTTGTATTAATTGCTACTTCATTAATCTTATTGATTAGTGTACCTGTTGTATTTGCTTCTCCCGAGGGTTGGTCGGGTAACAAAAATGTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTGGGTATCCTTAATTCTCTCATCTCTTGA

Protein Analysis

63

Amino Acids

6.56

Weight (kDa)

5.75

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020970)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00300
malus_domestica MD11G1068400.v1.1
prunus_persica Prupe.2G104500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0491831 RchiOBHm_CPg0502301

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 69, 130
AfiI CCNNNNNNNGG 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 89
AseI ATTAAT 2 cut(s) 35, 50
AvaI CYCGRG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 68, 129
CviJI RGCY 1 cut(s) 23
CviKI_1 RGCY 1 cut(s) 23
CviQI GTAC 2 cut(s) 68, 129
Eco88I CYCGRG 1 cut(s) 89
FaiI YATR 1 cut(s) 139
HapII CCGG 1 cut(s) 126
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 2 cut(s) 89, 186
Hpy8I GTNNAC 1 cut(s) 68
LpnPI CCDG 3 cut(s) 84, 139, 143
MaeIII GTNAC 1 cut(s) 104
MfeI CAATTG 1 cut(s) 17
MluCI AATT 3 cut(s) 17, 36, 172
MnlI CCTC 1 cut(s) 85
MseI TTAA 3 cut(s) 35, 50, 171
MslI CAYNNNNRTG 1 cut(s) 136
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 17
PshBI ATTAAT 2 cut(s) 35, 50
RsaI GTAC 2 cut(s) 69, 130
RsaNI GTAC 2 cut(s) 68, 129
RseI CAYNNNNRTG 1 cut(s) 136
SaqAI TTAA 3 cut(s) 35, 50, 171
SetI ASST 1 cut(s) 73
SgeI CNNG 6 cut(s) 83, 101, 103, 114, 138, 170
SmiMI CAYNNNNRTG 1 cut(s) 136
Sse9I AATT 3 cut(s) 17, 36, 172
TasI AATT 3 cut(s) 17, 36, 172
Tru1I TTAA 3 cut(s) 35, 50, 171
Tru9I TTAA 3 cut(s) 35, 50, 171
TspDTI ATGAA 1 cut(s) 36
VspI ATTAAT 2 cut(s) 35, 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.