Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020970

Physical Location & Seq

Genomic Coordinates Reverse (-)

76138 .. 76906

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15711

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGTAAAATCTTTCCATGATGCATTTTTTTTTTATTTTTGGCTGATAATGATAAAGATATCAAATGGTATAATTCTTTTGTTGGTAGATTGGAGGATTAGAAACATGACTATTGCTTTCCAGTTGGCTGTTTTTGCATTAATTGCTACTTCATTAATCTTATTGATTAGTGTACCTGTTGTATTTGCTTCTCCTGAGGGTTGGTCGGGTAACAAAAATGTTGTATTTTCCGGTACATCATTGTGGATTGGATTAGTCTTTCTGGTGGGTATCCTTAATTCTCTCATCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Ycf9

Protein Analysis

97

Amino Acids

10.87

Weight (kDa)

9.52

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ycf9	PF01737	40 - 96	1.8e-23	YCF9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00300
malus_domestica	MD11G1068400.v1.1
prunus_persica	Prupe.2G104500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0491831 RchiOBHm_CPg0502301

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	174, 235
AseI	ATTAAT	2 cut(s)	140, 155
AxyI	CCTNAGG	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 143
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	173, 234
CviAII	CATG	2 cut(s)	17, 106
CviJI	RGCY	2 cut(s)	43, 128
CviKI_1	RGCY	2 cut(s)	43, 128
CviQI	GTAC	2 cut(s)	173, 234
DdeI	CTNAG	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	60
Eco81I	CCTNAGG	1 cut(s)	195
EcoRV	GATATC	1 cut(s)	60
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	2 cut(s)	20, 109
FaiI	YATR	3 cut(s)	18, 71, 107
FatI	CATG	2 cut(s)	16, 105
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	2 cut(s)	20, 109
HpaII	CCGG	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188III	TCNNGA	2 cut(s)	194, 291
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4V	TGCA	2 cut(s)	23, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 143
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	20, 109
LpnPI	CCDG	5 cut(s)	134, 189, 207, 244, 248
LweI	GCATC	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	209
MluCI	AATT	3 cut(s)	72, 141, 277
MnlI	CCTC	2 cut(s)	87, 190
Mph1103I	ATGCAT	1 cut(s)	25
MseI	TTAA	3 cut(s)	140, 155, 276
MslI	CAYNNNNRTG	1 cut(s)	241
MspI	CCGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	134, 143
NlaIII	CATG	2 cut(s)	20, 109
NsiI	ATGCAT	1 cut(s)	25
PshBI	ATTAAT	2 cut(s)	140, 155
RsaI	GTAC	2 cut(s)	174, 235
RsaNI	GTAC	2 cut(s)	173, 234
RseI	CAYNNNNRTG	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	140, 155, 276
SetI	ASST	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	10
SgeI	CNNG	8 cut(s)	29, 118, 133, 188, 206, 219, 243, 275
SmiMI	CAYNNNNRTG	1 cut(s)	241
Sse9I	AATT	3 cut(s)	72, 141, 277
TasI	AATT	3 cut(s)	72, 141, 277
Tru1I	TTAA	3 cut(s)	140, 155, 276
Tru9I	TTAA	3 cut(s)	140, 155, 276
TspDTI	ATGAA	1 cut(s)	141
VspI	ATTAAT	2 cut(s)	140, 155
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.