Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014621

Physical Location & Seq

Genomic Coordinates Reverse (-)

48677 .. 49153

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGCTTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCTGTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCACCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAAGCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTTTTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAGGGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0007154 GO:0008137 GO:0008150 GO:0008152 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009970 GO:0009987 GO:0009991 GO:0015980 GO:0016491 GO:0016651 GO:0016655 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050136 GO:0050896 GO:0051716 GO:0055114 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_30kDa Oxidored_q6

Protein Analysis

158

Amino Acids

18.56

Weight (kDa)

6.51

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_30kDa	PF00329	30 - 148	9.4e-34	Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00420
fragaria_vesca	FvH4_3g38401
prunus_persica	Prupe.1G270900_v2.0.a1
pyrus_communis	pycom12397g00280
rosa_chinensis	RchiOBHm_Chr7g0209391 RchiOBHm_CPg0502181
rosa_laevigata	RLG00000000065 RLG00000000110 RLG00000000167 RLG00000000225 RLG00000000261 RLG00000000271 RLG00000000294 RLG00000000326 RLG00000000333 RLG00000000346 RLG00000037109

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	36, 242
AclWI	GGATC	2 cut(s)	385, 398
AcsI	RAATTY	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	4 cut(s)	36, 105, 303, 408
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	385, 398
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	187, 419
ApoI	RAATTY	1 cut(s)	288
AsuNHI	GCTAGC	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	178
BccI	CCATC	2 cut(s)	301, 381
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	26, 285
Bme1390I	CCNGG	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	180, 392
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 105, 303, 408
Bse3DI	GCAATG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	2 cut(s)	293, 373
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	36, 105, 303, 408
BseMI	GCAATG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	189, 421
BshNI	GGYRCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	401
BslI	CCNNNNNNNGG	4 cut(s)	36, 105, 303, 408
BsmAI	GTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	189, 421
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	50, 390
BspACI	CCGC	2 cut(s)	36, 242
BspANI	GGCC	2 cut(s)	189, 421
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	180, 392
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	385, 398
BspT107I	GGYRCC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	167
BssMI	GATC	2 cut(s)	50, 390
Bst2UI	CCWGG	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	27, 38, 199
BstDEI	CTNAG	1 cut(s)	193
BstF5I	GGATG	2 cut(s)	293, 373
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	53, 393
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	50, 390
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSLI	GKGCMC	1 cut(s)	11
BstSNI	TACGTA	1 cut(s)	428
BstUI	CGCG	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	189, 421
BtsCI	GGATG	2 cut(s)	293, 373
Cac8I	GCNNGC	3 cut(s)	27, 38, 199
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	318
CviJI	RGCY	9 cut(s)	25, 29, 40, 60, 97, 189, 197, 372, 421
CviKI_1	RGCY	9 cut(s)	25, 29, 40, 60, 97, 189, 197, 372, 421
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	2 cut(s)	52, 392
DpnII	GATC	2 cut(s)	50, 390
DraIII	CACNNNGTG	1 cut(s)	185
Eco105I	TACGTA	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	181
FauI	CCCGC	1 cut(s)	29
FokI	GGATG	2 cut(s)	280, 360
FspBI	CTAG	2 cut(s)	26, 285
HaeIII	GGCC	2 cut(s)	189, 421
HinfI	GANTC	2 cut(s)	338, 357
Hpy188III	TCNNGA	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	154, 427
HpyCH4V	TGCA	2 cut(s)	4, 255
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	2 cut(s)	154, 427
Kzo9I	GATC	2 cut(s)	50, 390
LpnPI	CCDG	6 cut(s)	26, 168, 195, 211, 259, 289
LweI	GCATC	1 cut(s)	457
MabI	ACCWGGT	1 cut(s)	181
MaeI	CTAG	2 cut(s)	26, 285
MaeII	ACGT	2 cut(s)	154, 427
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	52, 392
MboI	GATC	2 cut(s)	50, 390
MboII	GAAGA	2 cut(s)	113, 257
MflI	RGATCY	1 cut(s)	390
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	123, 145, 288, 448
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	36
NdeII	GATC	2 cut(s)	50, 390
NheI	GCTAGC	1 cut(s)	25
NlaIV	GGNNCC	2 cut(s)	180, 392
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	338, 357
Ppu21I	YACGTR	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	180, 392
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	50, 390
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	3 cut(s)	157, 187, 430
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	457
SnaBI	TACGTA	1 cut(s)	428
Sse9I	AATT	4 cut(s)	123, 145, 288, 448
SsiI	CCGC	2 cut(s)	36, 242
SspMI	CTAG	2 cut(s)	26, 285
StyD4I	CCNGG	1 cut(s)	181
TaiI	ACGT	2 cut(s)	157, 430
TaqI	TCGA	1 cut(s)	63
TasI	AATT	4 cut(s)	123, 145, 288, 448
TfiI	GAWTC	2 cut(s)	338, 357
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	35, 471
TspGWI	ACGGA	4 cut(s)	7, 286, 335, 403
XapI	RAATTY	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	2 cut(s)	37, 300
XspI	CTAG	2 cut(s)	26, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.