Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020230

Physical Location & Seq

Genomic Coordinates Forward (+)

61657 .. 62619

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCAAACTAGAAATACCTTTTCTTGGATAAGGGAAGAGATTACTCGCTCCATATCTGTCTCACTCATAATATATATAATAACTTGGGCATCCATTTCAAGTGCATATCCGATTTTTGCCCAGCAGAATTATGAAAATCCACGAGAGGCGACTGGGCGTATTGTATGTGCCAATTGCCATTTAGCTAATAAGCCCGTGGATATTGAGGTTCCACAAACGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTAAAATTCCTTATGATATGCAACTAAAACAAGTTCTAGCTAATGGTAAAAAAGGGGCTTTGAATGTGGGAGCTGTTCTTATTTTACCGGAGGGTTTTGAATTAGCCCCCCCCGATCGTATTTCACCCGAGATGAAAGAAAAGATAGGAAATCTTTCTTTTCAGAATTATCGTCCCAATAAAAAAAATATTCTTGTGATAGGTCCTGTTCCTGGTCAAAAATATAGTGAAATAACCTTTCCTATTCTTGCTCCAGACCCTGCTACTAATAAAGATGTTCACTTCTTAAAATATCCTATATATGTAGGTGGAAACAGGGGAAGGGGTCAGATTTATCCTGATGGTAGCAAAAGTAACAATACAGTTTATAATGCTACGGCAGGAGGGATAATAAGTAAAATTTTACGAAAAGAAAAGGGGGGATACGAAATAACCATAGTGGATGCATCGAATGGACGCGAAGTTATTGATATTATCCCTCGAGGCCTAGAACTTCTTGTTTCAGAGGGCGAATCCATTAAACTCGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCGGAAATAGTACTTCAAGATCCATTACGTGTCCAAGGTCTTTTGTTCTTCTTAGGATCGGTTGTTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAGTTTGAGAAGGTTCAATTATCCGAAATGAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009512 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0070069

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

Apocytochr_F_C Apocytochr_F_N

Protein Analysis

320

Amino Acids

35.36

Weight (kDa)

8.34

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Apocytochr_F_N	PF16639	36 - 190	1.9e-80	Apocytochrome F, N-terminal
Apocytochr_F_C	PF01333	202 - 320	2.5e-48	Apocytochrome F, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00540
malus_domestica	MD09G1098000.v1.1 MD12G1014500.v1.1
pyrus_communis	pycom12397g00220
rosa_chinensis	RchiOBHm_CPg0502071
rosa_rugosa	Rorug02G0490700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	618
AbsI	CCTCGAGG	1 cut(s)	729
AccII	CGCG	1 cut(s)	708
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	2 cut(s)	839, 889
AcsI	RAATTY	3 cut(s)	255, 648, 955
AfaI	GTAC	2 cut(s)	222, 837
AfiI	CCNNNNNNNGG	3 cut(s)	24, 461, 803
AflIII	ACRYGT	1 cut(s)	853
AgsI	TTSAA	6 cut(s)	99, 242, 313, 350, 842, 941
AjnI	CCWGG	1 cut(s)	460
AluBI	AGCT	3 cut(s)	185, 290, 323
AluI	AGCT	3 cut(s)	185, 290, 323
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	839, 889
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	2 cut(s)	377, 729
AoxI	GGCC	1 cut(s)	733
ApoI	RAATTY	3 cut(s)	255, 648, 955
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	366
AvaI	CYCGRG	2 cut(s)	377, 729
AvaII	GGWCC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	141
BccI	CCATC	1 cut(s)	584
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	1 cut(s)	462
BciVI	GTATCC	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	3 cut(s)	9, 287, 737
BfuI	GTATCC	1 cut(s)	665
BmcAI	AGTACT	1 cut(s)	837
Bme1390I	CCNGG	1 cut(s)	462
Bme18I	GGWCC	1 cut(s)	452
BmeT110I	CYCGRG	2 cut(s)	377, 729
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	462
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	4 cut(s)	98, 682, 704, 814
BmuI	ACTGGG	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	854
BsaJI	CCNNGG	2 cut(s)	195, 859
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 461, 803
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	195, 859
BseGI	GGATG	3 cut(s)	89, 697, 829
BseLI	CCNNNNNNNGG	3 cut(s)	24, 461, 803
BseNI	ACTGG	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	708
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	735
BsiEI	CGRYCG	1 cut(s)	367
BsiHKCI	CYCGRG	2 cut(s)	377, 729
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	24, 461, 803
BsmAI	GTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	735
BsoBI	CYCGRG	2 cut(s)	377, 729
Bsp143I	GATC	4 cut(s)	364, 775, 844, 881
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	1 cut(s)	735
BspFNI	CGCG	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	2 cut(s)	839, 889
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	195, 859
BssMI	GATC	4 cut(s)	364, 775, 844, 881
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	859
Bst2BI	CACGAG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	4 cut(s)	220, 235, 613, 927
Bst6I	CTCTTC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	854
BstDEI	CTNAG	1 cut(s)	877
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	3 cut(s)	89, 697, 829
BstFNI	CGCG	1 cut(s)	708
BstKTI	GATC	4 cut(s)	367, 778, 847, 884
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	4 cut(s)	364, 775, 844, 881
BstMCI	CGRYCG	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	460
BstUI	CGCG	1 cut(s)	708
BstX2I	RGATCY	1 cut(s)	844
BstYI	RGATCY	1 cut(s)	844
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	1 cut(s)	735
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	3 cut(s)	89, 697, 829
CaiI	CAGNNNCTG	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	452
CseI	GACGC	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	221, 836
CviJI	RGCY	7 cut(s)	185, 193, 290, 308, 323, 356, 735
CviKI_1	RGCY	7 cut(s)	185, 193, 290, 308, 323, 356, 735
CviQI	GTAC	2 cut(s)	221, 836
DdeI	CTNAG	1 cut(s)	877
DpnI	GATC	4 cut(s)	366, 777, 846, 883
DpnII	GATC	4 cut(s)	364, 775, 844, 881
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	859
Eco147I	AGGCCT	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	452
Eco88I	CYCGRG	2 cut(s)	377, 729
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	859
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	859
FaqI	GGGAC	1 cut(s)	408
FokI	GGATG	3 cut(s)	76, 704, 836
FspBI	CTAG	3 cut(s)	9, 287, 737
GsaI	CCCAGC	1 cut(s)	124
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	735
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	714
HinfI	GANTC	1 cut(s)	761
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	5 cut(s)	111, 414, 579, 754, 949
Hpy188III	TCNNGA	4 cut(s)	227, 503, 587, 842
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	2 cut(s)	564, 928
HpyCH4III	ACNGT	4 cut(s)	220, 235, 613, 927
HpyCH4IV	ACGT	1 cut(s)	853
HpyCH4V	TGCA	4 cut(s)	4, 104, 271, 695
HpyF3I	CTNAG	1 cut(s)	877
HpySE526I	ACGT	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	364, 775, 844, 881
LmnI	GCTCC	3 cut(s)	53, 320, 505
LweI	GCATC	4 cut(s)	98, 682, 704, 814
MaeI	CTAG	3 cut(s)	9, 287, 737
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	4 cut(s)	366, 777, 846, 883
MboI	GATC	4 cut(s)	364, 775, 844, 881
MboII	GAAGA	2 cut(s)	47, 865
MfeI	CAATTG	1 cut(s)	172
MflI	RGATCY	1 cut(s)	844
MluCI	AATT	8 cut(s)	127, 172, 255, 350, 415, 648, 941, 955
MnlI	CCTC	7 cut(s)	139, 199, 334, 626, 725, 738, 748
Mph1103I	ATGCAT	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	5 cut(s)	252, 536, 768, 785, 915
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	462
MunI	CAATTG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	708
NdeII	GATC	4 cut(s)	364, 775, 844, 881
NlaIV	GGNNCC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	729
PceI	AGGCCT	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	761
Ple19I	CGATCG	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	854
PpuMI	RGGWCCY	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PspXI	VCTCGAGB	1 cut(s)	729
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	844
PvuI	CGATCG	1 cut(s)	367
RsaI	GTAC	2 cut(s)	222, 837
RsaNI	GTAC	2 cut(s)	221, 836
SaqAI	TTAA	5 cut(s)	252, 536, 768, 785, 915
Sau3AI	GATC	4 cut(s)	364, 775, 844, 881
Sau96I	GGNCC	1 cut(s)	452
ScaI	AGTACT	1 cut(s)	837
ScrFI	CCNGG	1 cut(s)	462
SfaNI	GCATC	4 cut(s)	98, 682, 704, 814
Sfr274I	CTCGAG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	452
SlaI	CTCGAG	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
Sse9I	AATT	8 cut(s)	127, 172, 255, 350, 415, 648, 941, 955
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	1 cut(s)	827
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	3 cut(s)	9, 287, 737
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	1 cut(s)	460
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	4 cut(s)	220, 235, 613, 927
TaiI	ACGT	1 cut(s)	856
TaqI	TCGA	3 cut(s)	698, 730, 774
TasI	AATT	8 cut(s)	127, 172, 255, 350, 415, 648, 941, 955
TatI	WGTACW	1 cut(s)	835
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	5 cut(s)	252, 536, 768, 785, 915
Tru9I	TTAA	5 cut(s)	252, 536, 768, 785, 915
TspDTI	ATGAA	2 cut(s)	147, 398
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	3 cut(s)	255, 648, 955
XhoI	CTCGAG	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	3 cut(s)	9, 287, 737
ZrmI	AGTACT	1 cut(s)	837
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.