Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020265

Physical Location & Seq

Genomic Coordinates Reverse (-)

83467 .. 83949

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATAAAGAAGAGAAAAAAGAAATCATATACGGAAGTATATGCTTTAGGGCAATATATATCTATGTCTGCCCATAAAGCACGGAGAGTAATTGATCAAATACGTGGACGTTCCTATGAAGAAGCACTTATGATATTAGAACTTATGCCTTATCGAGGATGTTATCCCATTTTTAAATTGGTTTATTCTGCTGCAGCGAACGCTAGTCACAATAAGGGTTTCAAAGAAACCAATTTAGTCATTAGTAAAGCTGAGGTGAACCAAGGGAATACTGTGAAAAAATTAAAACCTCGTGCCCGAGGACGAAGTTACCCAATAAAACGATCCACTTGTCATATAACTATCGTATTGGAAGATATATCCTTCTATCAACAATATGAAGAATATTTAATGTATTTAAAAAAACCTGGATGCAGCAATGAAAACAGAAATCTAACATGTTATGATACATATAGTAGTGGAGGCCTATGGGACAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0098798 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

160

Amino Acids

18.59

Weight (kDa)

9.7

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	16 - 118	2.6e-33	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00810
rosa_chinensis	RchiOBHm_Chr1g0329561 RchiOBHm_Chr5g0025841 RchiOBHm_Chr6g0286361 RchiOBHm_CPg0501841
rosa_wichuraiana	Rw7G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AlwI	GGATC	1 cut(s)	318
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	3 cut(s)	191, 194, 414
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	178, 206, 426
BciT130I	CCWGG	1 cut(s)	408
BclI	TGATCA	1 cut(s)	94
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	3 cut(s)	192, 195, 415
BlsI	GCNGC	3 cut(s)	193, 196, 416
Bme1390I	CCNGG	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	408
BmsI	GCATC	1 cut(s)	401
Bpu10I	CCTNAGC	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	262, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	262, 298
BseGI	GGATG	2 cut(s)	164, 416
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	178, 206, 426
BshFI	GGCC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	155
BsnI	GGCC	1 cut(s)	465
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	94, 323
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	262, 298
BssMI	GATC	2 cut(s)	94, 323
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	252
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	164, 416
BstKTI	GATC	2 cut(s)	97, 326
BstMBI	GATC	2 cut(s)	94, 323
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 200
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	3 cut(s)	178, 206, 426
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	164, 416
CviAII	CATG	1 cut(s)	438
CviJI	RGCY	2 cut(s)	251, 465
CviKI_1	RGCY	2 cut(s)	251, 465
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	96, 325
DpnII	GATC	2 cut(s)	94, 323
DraI	TTTAAA	2 cut(s)	175, 399
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	297
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	1 cut(s)	441
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	192, 195, 415
FokI	GGATG	2 cut(s)	171, 423
Fsp4HI	GCNGC	3 cut(s)	192, 195, 415
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	3 cut(s)	192, 195, 415
HaeIII	GGCC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	441
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	107, 259
Hpy8I	GTNNAC	2 cut(s)	107, 259
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	2 cut(s)	103, 109
HpyCH4V	TGCA	2 cut(s)	194, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 200
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	103, 109
Hsp92II	CATG	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	94, 323
LpnPI	CCDG	2 cut(s)	393, 420
Lsp1109I	GCAGC	3 cut(s)	178, 206, 426
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	2 cut(s)	103, 109
MaeIII	GTNAC	2 cut(s)	206, 308
MalI	GATC	2 cut(s)	96, 325
MboI	GATC	2 cut(s)	94, 323
MboII	GAAGA	4 cut(s)	22, 131, 365, 392
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	4 cut(s)	90, 176, 232, 281
MnlI	CCTC	5 cut(s)	149, 247, 293, 300, 455
MseI	TTAA	4 cut(s)	174, 284, 389, 398
MspR9I	CCNGG	1 cut(s)	408
MvaI	CCWGG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	77, 200
NdeII	GATC	2 cut(s)	94, 323
NlaIII	CATG	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	206
NspI	RCATGY	1 cut(s)	441
PceI	AGGCCT	1 cut(s)	465
PciI	ACATGT	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	193, 196, 416
Ppu21I	YACGTR	1 cut(s)	104
PscI	ACATGT	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	174, 284, 389, 398
SatI	GCNGC	3 cut(s)	192, 195, 415
Sau3AI	GATC	2 cut(s)	94, 323
ScrFI	CCNGG	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	106, 112, 253, 258, 292, 409
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	192
Sse9I	AATT	4 cut(s)	90, 176, 232, 281
SseBI	AGGCCT	1 cut(s)	465
SspI	AATATT	1 cut(s)	386
SspMI	CTAG	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	406
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	2 cut(s)	106, 112
TaqI	TCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	90, 176, 232, 281
Tru1I	TTAA	4 cut(s)	174, 284, 389, 398
Tru9I	TTAA	4 cut(s)	174, 284, 389, 398
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	3 cut(s)	191, 194, 414
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	3 cut(s)	132, 393, 435
TspGWI	ACGGA	2 cut(s)	47, 97
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.