Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020265

Physical Location & Seq

Genomic Coordinates Reverse (-)

19798024 .. 19798296

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTATATGTATATAACTGTATATCCATCCAGTCCATTGTCAACCTCAACCAGCGATACGTACATATCTATTATGGTATATGCTATGGAGATAAATGCACACCTTACAGCTTATGATGATCAAATTCGTGGGCATTCCTATGAAGAAACACTTATGATACCAGAACTCATGCCTTATCAAGCAAGTTATGACATTTTAAAATTGGTTTATTCTGCAGCAGCAAATGCTAATCACAATAAAGGTTTGAGCCTGCATCTGCACTCCTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0098798 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

90

Amino Acids

10.29

Weight (kDa)

5.25

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	40 - 81	5.9e-06	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00810
rosa_chinensis	RchiOBHm_Chr1g0329561 RchiOBHm_Chr5g0025841 RchiOBHm_Chr6g0286361 RchiOBHm_CPg0501841
rosa_wichuraiana	Rw7G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	123
AfaI	GTAC	1 cut(s)	62
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	215, 218
ApoI	RAATTY	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	227, 230
BccI	CCATC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	2 cut(s)	216, 219
BlsI	GCNGC	2 cut(s)	217, 220
BmsI	GCATC	1 cut(s)	262
BsaAI	YACGTR	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	227, 230
BsgI	GTGCAG	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	19
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	227, 230
BtsCI	GGATG	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	2 cut(s)	110, 249
CviKI_1	RGCY	2 cut(s)	110, 249
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DraI	TTTAAA	1 cut(s)	198
Eco105I	TACGTA	1 cut(s)	60
FaeI	CATG	1 cut(s)	172
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	216, 219
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	2 cut(s)	216, 219
GluI	GCNGC	2 cut(s)	216, 219
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	98, 215, 253, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	4 cut(s)	43, 64, 174, 263
Lsp1109I	GCAGC	2 cut(s)	227, 230
LweI	GCATC	1 cut(s)	262
MaeII	ACGT	1 cut(s)	59
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	2 cut(s)	123, 200
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	2 cut(s)	197, 271
MslI	CAYNNNNRTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	172
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	217, 220
Ppu21I	YACGTR	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	197, 271
SatI	GCNGC	2 cut(s)	216, 219
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	5 cut(s)	47, 62, 105, 112, 244
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	213
SgeI	CNNG	8 cut(s)	42, 63, 140, 173, 181, 191, 195, 262
SmiMI	CAYNNNNRTG	1 cut(s)	138
SnaBI	TACGTA	1 cut(s)	60
Sse9I	AATT	2 cut(s)	123, 200
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	62
TasI	AATT	2 cut(s)	123, 200
Tru1I	TTAA	2 cut(s)	197, 271
Tru9I	TTAA	2 cut(s)	197, 271
TseI	GCWGC	2 cut(s)	215, 218
TspDTI	ATGAA	1 cut(s)	156
XapI	RAATTY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.