Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020265

Physical Location & Seq

Genomic Coordinates Reverse (-)

49730638 .. 49730970

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGAGGTGAACCTTATAATTACGGAGAAAAAAAAAAAGCCGTACCAATATACAGAAGTAGCCGCTTCAGGCCAACAATATGTATTTCTACTCACAAAGCGAGAAGAGTAATTGATCAAATTCATGGGCGTTCCTATGAAGAAACACTTATGATACTAGAACTCATGCTTAATCAAGCATGTTGTGACATTTTAAAATTGGTTTATTCTACAACAGCAAATGCTAATCACAATAAAGGTTTGAATGAAACAAGTTTAATTATTAGTAGATACTCGAAGTATTTACTCATGGGGTTAAAGAGCAGTAAGTTTTTGTGTCAACGGTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0031967 GO:0031974 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0098798 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L22

Protein Analysis

110

Amino Acids

12.78

Weight (kDa)

9.73

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	27 - 90	1.8e-11	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0020265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00810
rosa_chinensis	RchiOBHm_Chr1g0329561 RchiOBHm_Chr5g0025841 RchiOBHm_Chr6g0286361 RchiOBHm_CPg0501841
rosa_wichuraiana	Rw7G013510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
AciI	CCGC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	52
AfaI	GTAC	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	26
BclI	TGATCA	1 cut(s)	115
BfaI	CTAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	73
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	100
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	4 cut(s)	125, 166, 180, 289
CviJI	RGCY	3 cut(s)	41, 63, 73
CviKI_1	RGCY	3 cut(s)	41, 63, 73
CviQI	GTAC	1 cut(s)	44
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	52
FaeI	CATG	4 cut(s)	128, 169, 183, 292
FaiI	YATR	9 cut(s)	18, 52, 82, 126, 138, 152, 167, 181, 290
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	4 cut(s)	124, 165, 179, 288
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	73
Hin1II	CATG	4 cut(s)	128, 169, 183, 292
HincII	GTYRAC	1 cut(s)	320
HindII	GTYRAC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	11, 320
Hpy8I	GTNNAC	2 cut(s)	11, 320
HpyCH4III	ACNGT	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	128, 169, 183, 292
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	1 cut(s)	55
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	117, 152
MluCI	AATT	5 cut(s)	19, 111, 120, 197, 258
MseI	TTAA	4 cut(s)	171, 194, 257, 296
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	4 cut(s)	128, 169, 183, 292
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	18
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	4 cut(s)	171, 194, 257, 296
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	115
SetI	ASST	3 cut(s)	10, 16, 241
Sse9I	AATT	5 cut(s)	19, 111, 120, 197, 258
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	275
TasI	AATT	5 cut(s)	19, 111, 120, 197, 258
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	4 cut(s)	171, 194, 257, 296
Tru9I	TTAA	4 cut(s)	171, 194, 257, 296
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	113, 153, 261
TspGWI	ACGGA	1 cut(s)	39
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.