ATMG00640

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0019174
Physical Location & Seq
Reverse (-)
188084 .. 188662
579 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00640.1

Sequence Viewer

Length: 579 bp
ATGAGATTGAGTATTACGAATATGGATGGTAGAAAGATGTTATTTGCTGCTATTCTATCTATTTGTGCATTAAGTTCGAAGAAGATCTCAATCTATAATGAAGAAATGATAGTAGCTCTTTGTTTTATAGGCTTTATCATATTCAGTCGTAAGAGTTTAGGTACGACTTTCAAAGTGACTCTCGACGGGAGCCTCCAGGCTATTCAGGAAGAATCGCAGCAATTCCCCAATCCTAACGAAGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGCTTGCGAATTTGTGGCACCGTAGTAGAATCATTACCAATGGCACGCTGTGCGCCTAAGTGCGAAAAGACAGTGCAAGCTTTGTTATGCCGAAACCTAAATGTTAAGTCAGCAACACTTACAAATGCCACTTCTTCCCGTCGCATCCGTTTTCAGGACGATCTAGTCACAAAGTTTTACACCTTAGTGGGGAAGCAATTTGCCTACTCTTGTATCTCGAAAGCAGAAAGAGTAGAATTCATTCGAGAGAGCTTGGTGGTCTTAAGAATGGTTCGGGGGGGGGTTTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mt_ATP-synt_B

Protein Analysis

192

Amino Acids

21.57

Weight (kDa)

9.53

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mt_ATP-synt_B PF05405 20 - 184 3.6e-47 Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019174)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00640
rosa_chinensis RchiOBHm_MTg0498351
rosa_laevigata RLG00000000385 RLG00000000401
rosa_multiflora Rmu_sc0022700.1_g000004
rosa_roxburghii Rroxscaffold_2G00119440
rosa_samantha Rh1BG019400 Rh4BG135100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 250
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 2 cut(s) 294, 521
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 439, 474
AflII CTTAAG 1 cut(s) 547
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 4 cut(s) 116, 288, 365, 537
AluI AGCT 4 cut(s) 116, 288, 365, 537
AlwI GGATC 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 250
ApeKI GCWGC 2 cut(s) 47, 217
ApoI RAATTY 2 cut(s) 294, 521
Asp700I GAANNNNTTC 2 cut(s) 243, 525
AspLEI GCGC 1 cut(s) 340
AsuII TTCGAA 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BanI GGYRCC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 34, 229
BccI CCATC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 197
BfaI CTAG 1 cut(s) 449
BfrI CTTAAG 1 cut(s) 547
BglII AGATCT 1 cut(s) 84
BisI GCNGC 2 cut(s) 48, 218
BlsI GCNGC 2 cut(s) 49, 219
Bme1390I CCNGG 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 191, 304
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 474
Bse8I GATNNNNATC 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 250
BseBI CCWGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 31, 429
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 439, 474
BseXI GCAGC 2 cut(s) 34, 229
BshNI GGYRCC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 439, 474
Bsp119I TTCGAA 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 3 cut(s) 84, 282, 445
BspEI TCCGGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 191, 304
BspPI GGATC 1 cut(s) 290
BspT104I TTCGAA 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 302
BspTI CTTAAG 1 cut(s) 547
BssMI GATC 3 cut(s) 84, 282, 445
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 307, 358
BstAFI CTTAAG 1 cut(s) 547
BstAPI GCANNNNNTGC 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 290, 331, 363
BstDEI CTNAG 3 cut(s) 278, 342, 469
BstF5I GGATG 2 cut(s) 31, 429
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 3 cut(s) 87, 285, 448
BstMBI GATC 3 cut(s) 84, 282, 445
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 34, 229
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BtsCI GGATG 2 cut(s) 31, 429
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 3 cut(s) 290, 331, 363
CfoI GCGC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 162
CviJI RGCY 7 cut(s) 116, 132, 192, 200, 288, 365, 537
CviKI_1 RGCY 7 cut(s) 116, 132, 192, 200, 288, 365, 537
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 278, 342, 469
DpnI GATC 3 cut(s) 86, 284, 447
DpnII GATC 3 cut(s) 84, 282, 445
DraIII CACNNNGTG 1 cut(s) 335
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 195
FaiI YATR 5 cut(s) 23, 96, 128, 140, 373
Fnu4HI GCNGC 2 cut(s) 48, 218
FokI GGATG 2 cut(s) 38, 416
Fsp4HI GCNGC 2 cut(s) 48, 218
FspBI CTAG 1 cut(s) 449
GlaI GCGC 1 cut(s) 339
GluI GCNGC 2 cut(s) 48, 218
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 1 cut(s) 251
HhaI GCGC 1 cut(s) 340
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 4 cut(s) 178, 212, 254, 314
HpaII CCGG 1 cut(s) 251
Hpy188III TCNNGA 6 cut(s) 182, 206, 251, 440, 502, 530
Hpy99I CGWCG 2 cut(s) 188, 429
HpyCH4III ACNGT 2 cut(s) 307, 358
HpyCH4V TGCA 2 cut(s) 68, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 278, 342, 469
HspAI GCGC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 84, 282, 445
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 182, 191, 209, 264, 425
Lsp1109I GCAGC 2 cut(s) 34, 229
LweI GCATC 1 cut(s) 438
MaeI CTAG 1 cut(s) 449
MaeIII GTNAC 2 cut(s) 175, 451
MalI GATC 3 cut(s) 86, 284, 447
MboI GATC 3 cut(s) 84, 282, 445
MboII GAAGA 5 cut(s) 91, 94, 113, 221, 411
MflI RGATCY 1 cut(s) 84
MluCI AATT 4 cut(s) 221, 294, 482, 521
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 2 cut(s) 203, 258
MroI TCCGGA 1 cut(s) 250
MroXI GAANNNNTTC 2 cut(s) 243, 525
MseI TTAA 4 cut(s) 71, 390, 548, 577
MslI CAYNNNNRTG 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 547
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 3 cut(s) 84, 282, 445
NlaIV GGNNCC 2 cut(s) 191, 304
NmuCI GTSAC 2 cut(s) 175, 451
NspV TTCGAA 1 cut(s) 77
OliI CACNNNNGTG 1 cut(s) 470
PdmI GAANNNNTTC 2 cut(s) 243, 525
PfeI GAWTC 3 cut(s) 212, 254, 314
PkrI GCNGC 2 cut(s) 49, 219
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 191, 304
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 4 cut(s) 71, 390, 548, 577
SatI GCNGC 2 cut(s) 48, 218
Sau3AI GATC 3 cut(s) 84, 282, 445
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 197
SetI ASST 7 cut(s) 118, 163, 290, 367, 384, 470, 539
SfaNI GCATC 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
Sse9I AATT 4 cut(s) 221, 294, 482, 521
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 307, 358
TaqI TCGA 4 cut(s) 77, 183, 503, 529
TasI AATT 4 cut(s) 221, 294, 482, 521
TfiI GAWTC 3 cut(s) 212, 254, 314
Tru1I TTAA 4 cut(s) 71, 390, 548, 577
Tru9I TTAA 4 cut(s) 71, 390, 548, 577
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 2 cut(s) 175, 451
TseI GCWGC 2 cut(s) 47, 217
Tsp45I GTSAC 2 cut(s) 175, 451
TspDTI ATGAA 3 cut(s) 114, 276, 514
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 547
XapI RAATTY 2 cut(s) 294, 521
XmnI GAANNNNTTC 2 cut(s) 243, 525
XspI CTAG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.