Rmu_sc0022700.1_g000004

ATP synthase protein MI25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022700.1
OG0019174
Physical Location & Seq
Forward (+)
7939 .. 8499
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022700.1_g000004.1.cds

Sequence Viewer

Length: 561 bp
atgctatttgctgcaattccatctatttgtgcattaagttcgaagaagatctcaatctataatgaagaaatgatagtagctctttgttttataggctttatcatattgagtcgtaagagtttaggggatactttcaaaatgactctcgacggtagaatccaggctattcaggaagaatcgcagcaattccccaatcctaacgaagtagttcctctggaatccaatgaacaacaacgattccttaggatcagtttacgaatttgtggcaccgtagtagaatcattaccaattgcacgctgtgcgcctaagtgcgaaaagacagtgcaagctttgttatgccgaaacctaaatgttaagtcagcaacacttccaaatgccatttcttcccgtcgcatccgtcttcaggacgatctagtcacagggtttcatttctcagtgagtgaaagatttgtccctgggtgtacgttgaaagcttctatagtagaactcattcgagagggcttggtggtcttaagaatggttctggtggggggttcccttaagaataaagaagacgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mt_ATP-synt_B

Protein Analysis

186

Amino Acids

20.68

Weight (kDa)

8.73

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019174)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00640
rosa_chinensis RchiOBHm_MTg0498351
rosa_laevigata RLG00000000385 RLG00000000401
rosa_multiflora Rmu_sc0022700.1_g000004
rosa_roxburghii Rroxscaffold_2G00119440
rosa_samantha Rh1BG019400 Rh4BG135100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 266
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 386
AdeI CACNNNGTG 1 cut(s) 299
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 403
AflII CTTAAG 2 cut(s) 511, 539
AgsI TTSAA 2 cut(s) 136, 469
AjnI CCWGG 2 cut(s) 159, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 3 cut(s) 80, 329, 473
AluI AGCT 3 cut(s) 80, 329, 473
AlwI GGATC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 11, 181
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 2 cut(s) 207, 489
AspLEI GCGC 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 41
AxyI CCTNAGG 1 cut(s) 242
BanI GGYRCC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 193
BccI CCATC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciT130I CCWGG 2 cut(s) 161, 456
BciVI GTATCC 1 cut(s) 121
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 477
BfrI CTTAAG 2 cut(s) 511, 539
BfuI GTATCC 1 cut(s) 121
BglII AGATCT 1 cut(s) 48
BisI GCNGC 2 cut(s) 12, 182
BlsI GCNGC 2 cut(s) 13, 183
Bme1390I CCNGG 2 cut(s) 161, 456
BmiI GGNNCC 2 cut(s) 268, 535
BmrFI CCNGG 2 cut(s) 161, 456
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 392
Bpu14I TTCGAA 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 454, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse21I CCTNAGG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 53
BseBI CCWGG 2 cut(s) 161, 456
BseDI CCNNGG 2 cut(s) 454, 455
BseGI GGATG 1 cut(s) 393
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 447
BseXI GCAGC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 266
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 48, 246, 409
BspCNI CTCAG 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 268, 535
BspPI GGATC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 266
BspTI CTTAAG 2 cut(s) 511, 539
BssECI CCNNGG 2 cut(s) 454, 455
BssMI GATC 3 cut(s) 48, 246, 409
Bst2UI CCWGG 2 cut(s) 161, 456
Bst4CI ACNGT 3 cut(s) 152, 271, 322
BstAFI CTTAAG 2 cut(s) 511, 539
BstAPI GCANNNNNTGC 1 cut(s) 299
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 295, 327
BstDEI CTNAG 3 cut(s) 242, 306, 433
BstF5I GGATG 1 cut(s) 393
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 51, 249, 412
BstMBI GATC 3 cut(s) 48, 246, 409
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstNI CCWGG 2 cut(s) 161, 456
BstSCI CCNGG 2 cut(s) 159, 454
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 327, 441
Cac8I GCNNGC 2 cut(s) 295, 327
CfoI GCGC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 462
CviJI RGCY 6 cut(s) 80, 96, 164, 329, 473, 501
CviKI_1 RGCY 6 cut(s) 80, 96, 164, 329, 473, 501
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 3 cut(s) 242, 306, 433
DpnI GATC 3 cut(s) 50, 248, 411
DpnII GATC 3 cut(s) 48, 246, 409
DraIII CACNNNGTG 1 cut(s) 299
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 159, 454
FaiI YATR 5 cut(s) 60, 92, 104, 337, 479
FaqI GGGAC 1 cut(s) 437
Fnu4HI GCNGC 2 cut(s) 12, 182
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 12, 182
FspBI CTAG 1 cut(s) 413
GlaI GCGC 1 cut(s) 303
GluI GCNGC 2 cut(s) 12, 182
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HindIII AAGCTT 2 cut(s) 327, 471
HinfI GANTC 7 cut(s) 109, 142, 156, 176, 218, 237, 278
Hpy166II GTNNAC 2 cut(s) 254, 462
Hpy188III TCNNGA 5 cut(s) 146, 170, 215, 404, 494
Hpy8I GTNNAC 2 cut(s) 254, 462
Hpy99I CGWCG 2 cut(s) 152, 393
HpyCH4III ACNGT 3 cut(s) 152, 271, 322
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 4 cut(s) 14, 32, 293, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 3 cut(s) 242, 306, 433
HpySE526I ACGT 1 cut(s) 464
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 3 cut(s) 48, 246, 409
LpnPI CCDG 9 cut(s) 146, 155, 173, 200, 389, 405, 441, 468, 509
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 402
MaeI CTAG 1 cut(s) 413
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 1 cut(s) 415
MalI GATC 3 cut(s) 50, 248, 411
MboI GATC 3 cut(s) 48, 246, 409
MboII GAAGA 6 cut(s) 55, 58, 77, 185, 375, 392
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 48
MluCI AATT 4 cut(s) 15, 185, 258, 288
MlyI GAGTC 2 cut(s) 118, 136
MnlI CCTC 2 cut(s) 222, 490
MroXI GAANNNNTTC 2 cut(s) 207, 489
MseI TTAA 4 cut(s) 35, 354, 512, 540
MspCI CTTAAG 2 cut(s) 511, 539
MspR9I CCNGG 2 cut(s) 161, 456
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 2 cut(s) 161, 456
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 3 cut(s) 48, 246, 409
NlaIV GGNNCC 2 cut(s) 268, 535
NmuCI GTSAC 1 cut(s) 415
NspV TTCGAA 1 cut(s) 41
PasI CCCWGGG 1 cut(s) 455
PdmI GAANNNNTTC 2 cut(s) 207, 489
PfeI GAWTC 5 cut(s) 156, 176, 218, 237, 278
PkrI GCNGC 2 cut(s) 13, 183
PleI GAGTC 2 cut(s) 117, 136
PpsI GAGTC 2 cut(s) 117, 136
Psp6I CCWGG 2 cut(s) 159, 454
PspGI CCWGG 2 cut(s) 159, 454
PspN4I GGNNCC 2 cut(s) 268, 535
PsuI RGATCY 1 cut(s) 48
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SaqAI TTAA 4 cut(s) 35, 354, 512, 540
SatI GCNGC 2 cut(s) 12, 182
Sau3AI GATC 3 cut(s) 48, 246, 409
SchI GAGTC 2 cut(s) 118, 136
ScrFI CCNGG 2 cut(s) 161, 456
SetI ASST 5 cut(s) 82, 331, 348, 467, 475
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 477
SfuI TTCGAA 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 511, 539
SmoI CTYRAG 2 cut(s) 511, 539
Sse9I AATT 4 cut(s) 15, 185, 258, 288
SspMI CTAG 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 159, 454
TaaI ACNGT 3 cut(s) 152, 271, 322
TaiI ACGT 1 cut(s) 467
TaqI TCGA 3 cut(s) 41, 147, 493
TasI AATT 4 cut(s) 15, 185, 258, 288
TfiI GAWTC 5 cut(s) 156, 176, 218, 237, 278
Tru1I TTAA 4 cut(s) 35, 354, 512, 540
Tru9I TTAA 4 cut(s) 35, 354, 512, 540
TscAI CASTG 2 cut(s) 327, 441
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 11, 181
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 78, 240, 416
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 327, 441
Vha464I CTTAAG 2 cut(s) 511, 539
XapI RAATTY 1 cut(s) 258
XmnI GAANNNNTTC 2 cut(s) 207, 489
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.