Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019146

Physical Location & Seq

Genomic Coordinates Reverse (-)

318588 .. 319463

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG01280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGATTGTTCTAAAATGGTTATTCCTCACAATTTCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATCTCAAGACGCAGCTACACCTATAATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAAAATGCAATCCCGCAAAGAATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATTTTTCCTTGTTTCATTTCGATATTCATTGTTGAACCATCCTTTGCTTTGGCCCTTGACGACGCGGCGGAGGCTCTCTTCCCCAACACAGCCCCGACCCCTTCCAACACCTCCTCGTCGGAGGATTCTTTTGGGCTGAGGGTTCTTTCGGAACCCTGGCCCATTACCCGAAATCTCGGGTTGGAGTCTTCGATTTGTAATCGAATTCGCCTGCTCGAGGCGGCGAATTCCCCTTTTCTGCTTGGAAAAGAGAAAGGGCAGTATTGGGGGGAAATTCAAGAATGTCTTTATAATGTTTCCGAACAAAGGGAGTATTATAGACTCTTGGATTTCGAGAACCGGGATCTCCAAATAAGGGAACGGAAGCACTCCTGTTTAGAAGTCTTTCGGGGAGTGCTTTTGAGGAATCCTTATTTGGAAGAAAGGGCCGCCTACTCTCCTCAAGAGGCTTTTTTCGACTTCTTGAACGAGAGGCGGGACGCGCTGGACATTTCGAACCCCGGATCTAGCCCGGCCGAAATGGACCGCCTAGAGATCTTATTTCTAGGCGAAATAGAGCGTGACCTTCTCAGACGGGGCGACGAATCTCTTTATATTAAACAATTACTTGGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX2 COX2_TM

Protein Analysis

291

Amino Acids

33.62

Weight (kDa)

4.99

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX2_TM	PF02790	17 - 103	9.3e-27	Cytochrome C oxidase subunit II, transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07695 ATMG01280
pyrus_communis	pycom461g00080
rosa_chinensis	RchiOBHm_MTg0498241
rosa_laevigata	RLG00000000359 RLG00000000373 RLG00000000389
rosa_roxburghii	Rroxscaffold_7G00202780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AccII	CGCG	3 cut(s)	177, 323, 740
AciI	CCGC	8 cut(s)	50, 215, 323, 326, 479, 687, 733, 784
AclWI	GGATC	4 cut(s)	76, 173, 609, 769
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	3 cut(s)	462, 484, 531
AfiI	CCNNNNNNNGG	3 cut(s)	475, 564, 613
AgsI	TTSAA	3 cut(s)	293, 536, 724
AjnI	CCWGG	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	656, 688
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AlwI	GGATC	4 cut(s)	76, 173, 609, 769
Ama87I	CYCGRG	2 cut(s)	434, 473
AoxI	GGCC	4 cut(s)	309, 416, 684, 771
ApeKI	GCWGC	2 cut(s)	47, 80
ApoI	RAATTY	3 cut(s)	462, 484, 531
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	2 cut(s)	179, 742
AspS9I	GGNCC	5 cut(s)	255, 310, 417, 684, 781
AsuC2I	CCSGG	3 cut(s)	599, 759, 770
AsuII	TTCGAA	1 cut(s)	752
AvaI	CYCGRG	2 cut(s)	434, 473
AvaII	GGWCC	2 cut(s)	255, 781
BbsI	GAAGAC	1 cut(s)	438
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	59, 92
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	415
BcnI	CCSGG	3 cut(s)	599, 759, 770
BfaI	CTAG	3 cut(s)	765, 788, 803
BglII	AGATCT	1 cut(s)	792
BisI	GCNGC	5 cut(s)	48, 81, 324, 480, 687
BlsI	GCNGC	5 cut(s)	49, 82, 325, 481, 688
Bme1390I	CCNGG	4 cut(s)	415, 599, 759, 770
Bme18I	GGWCC	2 cut(s)	255, 781
BmeT110I	CYCGRG	2 cut(s)	434, 473
BmgT120I	GGNCC	5 cut(s)	255, 310, 417, 684, 781
BmiI	GGNNCC	2 cut(s)	54, 411
BmrFI	CCNGG	4 cut(s)	415, 599, 759, 770
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	2 cut(s)	57, 684
BpuMI	CCSGG	3 cut(s)	599, 759, 770
BsaJI	CCNNGG	3 cut(s)	56, 413, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 564, 613
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	56, 413, 757
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	3 cut(s)	475, 564, 613
BseMII	CTCAG	2 cut(s)	386, 841
BseRI	GAGGAG	2 cut(s)	361, 687
BseX3I	CGGCCG	1 cut(s)	771
BseXI	GCAGC	2 cut(s)	59, 92
Bsh1236I	CGCG	3 cut(s)	177, 323, 740
Bsh1285I	CGRYCG	1 cut(s)	774
BshFI	GGCC	4 cut(s)	311, 418, 686, 773
BsiEI	CGRYCG	1 cut(s)	774
BsiHKCI	CYCGRG	2 cut(s)	434, 473
BsiSI	CCGG	3 cut(s)	598, 759, 770
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	3 cut(s)	475, 564, 613
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	4 cut(s)	311, 418, 686, 773
BsoBI	CYCGRG	2 cut(s)	434, 473
Bsp119I	TTCGAA	1 cut(s)	752
Bsp143I	GATC	5 cut(s)	68, 165, 601, 761, 792
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	8 cut(s)	50, 215, 323, 326, 479, 687, 733, 784
BspANI	GGCC	4 cut(s)	311, 418, 686, 773
BspCNI	CTCAG	2 cut(s)	387, 840
BspFNI	CGCG	3 cut(s)	177, 323, 740
BspLI	GGNNCC	2 cut(s)	54, 411
BspPI	GGATC	4 cut(s)	76, 173, 609, 769
BspT104I	TTCGAA	1 cut(s)	752
BssECI	CCNNGG	3 cut(s)	56, 413, 757
BssMI	GATC	5 cut(s)	68, 165, 601, 761, 792
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	395, 827
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	3 cut(s)	177, 323, 740
BstHHI	GCGC	2 cut(s)	179, 742
BstKTI	GATC	5 cut(s)	71, 168, 604, 764, 795
BstMBI	GATC	5 cut(s)	68, 165, 601, 761, 792
BstMCI	CGRYCG	1 cut(s)	774
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 739
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	4 cut(s)	413, 597, 757, 768
BstUI	CGCG	3 cut(s)	177, 323, 740
BstV1I	GCAGC	2 cut(s)	59, 92
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	5 cut(s)	68, 165, 601, 761, 792
BstYI	RGATCY	5 cut(s)	68, 165, 601, 761, 792
BstZI	CGGCCG	1 cut(s)	771
BsuRI	GGCC	4 cut(s)	311, 418, 686, 773
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	470
CfoI	GCGC	2 cut(s)	179, 742
Cfr13I	GGNCC	5 cut(s)	255, 310, 417, 684, 781
CseI	GACGC	3 cut(s)	86, 329, 746
CviAII	CATG	2 cut(s)	57, 230
DdeI	CTNAG	2 cut(s)	395, 827
DpnI	GATC	5 cut(s)	70, 167, 603, 763, 794
DpnII	GATC	5 cut(s)	68, 165, 601, 761, 792
EaeI	YGGCCR	1 cut(s)	771
EagI	CGGCCG	1 cut(s)	771
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	341
EclXI	CGGCCG	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	56
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	255, 781
Eco52I	CGGCCG	1 cut(s)	771
Eco88I	CYCGRG	2 cut(s)	434, 473
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoRI	GAATTC	2 cut(s)	462, 484
EcoRII	CCWGG	1 cut(s)	413
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	60, 233
FaiI	YATR	9 cut(s)	58, 92, 163, 184, 198, 231, 549, 576, 852
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	2 cut(s)	56, 229
FauI	CCCGC	2 cut(s)	222, 726
Fnu4HI	GCNGC	5 cut(s)	48, 81, 324, 480, 687
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	5 cut(s)	48, 81, 324, 480, 687
FspBI	CTAG	3 cut(s)	765, 788, 803
GlaI	GCGC	2 cut(s)	178, 741
GluI	GCNGC	5 cut(s)	48, 81, 324, 480, 687
HaeIII	GGCC	4 cut(s)	311, 418, 686, 773
HapII	CCGG	3 cut(s)	598, 759, 770
HgaI	GACGC	3 cut(s)	86, 329, 746
HhaI	GCGC	2 cut(s)	179, 742
Hin1II	CATG	2 cut(s)	60, 233
Hin6I	GCGC	2 cut(s)	177, 740
HinP1I	GCGC	2 cut(s)	177, 740
HinfI	GANTC	6 cut(s)	247, 383, 443, 579, 664, 842
HpaII	CCGG	3 cut(s)	598, 759, 770
Hpy188I	TCNGA	6 cut(s)	144, 255, 379, 409, 559, 830
Hpy188III	TCNNGA	7 cut(s)	74, 119, 244, 536, 592, 701, 721
Hpy99I	CGWCG	3 cut(s)	323, 379, 842
HpyAV	CCTTC	2 cut(s)	369, 833
HpyCH4V	TGCA	3 cut(s)	47, 97, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 739
HpyF3I	CTNAG	2 cut(s)	395, 827
Hsp92II	CATG	2 cut(s)	60, 233
HspAI	GCGC	2 cut(s)	177, 740
Kzo9I	GATC	5 cut(s)	68, 165, 601, 761, 792
LpnPI	CCDG	8 cut(s)	400, 427, 482, 611, 643, 728, 772, 783
Lsp1109I	GCAGC	2 cut(s)	59, 92
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	3 cut(s)	765, 788, 803
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	5 cut(s)	70, 167, 603, 763, 794
MboI	GATC	5 cut(s)	68, 165, 601, 761, 792
MboII	GAAGA	5 cut(s)	124, 242, 328, 438, 689
MflI	RGATCY	5 cut(s)	68, 165, 601, 761, 792
MluCI	AATT	7 cut(s)	30, 62, 222, 462, 484, 531, 860
MlyI	GAGTC	2 cut(s)	452, 573
MmeI	TCCRAC	3 cut(s)	357, 387, 420
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	1 cut(s)	855
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	3 cut(s)	598, 759, 770
MspR9I	CCNGG	4 cut(s)	415, 599, 759, 770
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	3 cut(s)	177, 323, 740
MwoI	GCNNNNNNNGC	2 cut(s)	329, 739
NciI	CCSGG	3 cut(s)	599, 759, 770
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	5 cut(s)	68, 165, 601, 761, 792
NlaIII	CATG	2 cut(s)	60, 233
NlaIV	GGNNCC	2 cut(s)	54, 411
NmuCI	GTSAC	1 cut(s)	818
NspV	TTCGAA	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	4 cut(s)	247, 383, 664, 842
PkrI	GCNGC	5 cut(s)	49, 82, 325, 481, 688
PleI	GAGTC	2 cut(s)	451, 573
PpsI	GAGTC	2 cut(s)	451, 573
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	54, 411
PspPI	GGNCC	5 cut(s)	255, 310, 417, 684, 781
PspXI	VCTCGAGB	1 cut(s)	473
PsuI	RGATCY	5 cut(s)	68, 165, 601, 761, 792
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	5 cut(s)	48, 81, 324, 480, 687
Sau3AI	GATC	5 cut(s)	68, 165, 601, 761, 792
Sau96I	GGNCC	5 cut(s)	255, 310, 417, 684, 781
SchI	GAGTC	2 cut(s)	452, 573
ScrFI	CCNGG	4 cut(s)	415, 599, 759, 770
SetI	ASST	4 cut(s)	85, 91, 371, 825
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	2 cut(s)	255, 781
SlaI	CTCGAG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	72, 473, 699
SmoI	CTYRAG	3 cut(s)	72, 473, 699
Sse9I	AATT	7 cut(s)	30, 62, 222, 462, 484, 531, 860
SsiI	CCGC	8 cut(s)	50, 215, 323, 326, 479, 687, 733, 784
SspMI	CTAG	3 cut(s)	765, 788, 803
StyD4I	CCNGG	4 cut(s)	413, 597, 757, 768
StyI	CCWWGG	1 cut(s)	56
TaqI	TCGA	8 cut(s)	243, 278, 449, 460, 474, 591, 714, 752
TasI	AATT	7 cut(s)	30, 62, 222, 462, 484, 531, 860
TauI	GCSGC	3 cut(s)	326, 482, 689
TfiI	GAWTC	4 cut(s)	247, 383, 664, 842
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	818
TseI	GCWGC	2 cut(s)	47, 80
Tsp45I	GTSAC	1 cut(s)	818
TspDTI	ATGAA	3 cut(s)	218, 262, 274
TspGWI	ACGGA	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	255, 781
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	3 cut(s)	462, 484, 531
XhoI	CTCGAG	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	3 cut(s)	765, 788, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.