Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019146

Physical Location & Seq

Genomic Coordinates Reverse (-)

797947 .. 799166

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000389

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATTGTAAAAGTTCTAGAATGGATATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACCCCTATGATGCAAGGAATAATGGACTTACATCACGATATCTTTTTCTTCCTCATTCTTATTTTGGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTATCATCCCGATGTTCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCGGATGTACCTCACACTTCTTACGCTGTACCGTTGGTCCCATCTCCCCATGAGCCGCCCTTCCGGGTTGGCTGGACCGGATTGCCTAATCCGCTAAATGAGCCGTCGCCTTTTAGCGGATGCCCTCTGGCCATATCCGAGGCATCTACCTCGGAACCTATAATATTAGAGGTCTCCGGGGTTGGGCAGGACGAGCTGTGGGCCGCGCTGGAAGCCGCGGAGCTTCGAAAGCTCATGAACTCTCCGGAATACCTGGAGACGGAGGAGGAACTCTTTCGCTTCTATAGACAGCAAAAAGCCATGGCGGAAGAGGTAGCCCCGCTCTTAAAAGAGCTGGGCTATGGGGCCATCCCGCCCAAGGAGATTAGGCTGGCCGTTGATATGGCCACCTATGATATAGGCGAGAGGCTTGGCAACGACCGGGCTGAGCGCATGGCGCACGCTCTGCGGGTCATCGCCGATCCGAATTCCCAATGCTTTATCAATATTCTAGATGAGCTGAGGAAGTTGGGTTCCATCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX2 COX2_TM

Protein Analysis

359

Amino Acids

40.55

Weight (kDa)

4.91

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX2_TM	PF02790	19 - 105	2e-29	Cytochrome C oxidase subunit II, transmembrane domain
COX2	PF00116	118 - 196	2.4e-24	Cytochrome C oxidase subunit II, periplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07695 ATMG01280
pyrus_communis	pycom461g00080
rosa_chinensis	RchiOBHm_MTg0498241
rosa_laevigata	RLG00000000359 RLG00000000373 RLG00000000389
rosa_roxburghii	Rroxscaffold_7G00202780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccBSI	CCGCTC	1 cut(s)	874
AccII	CGCG	3 cut(s)	183, 758, 770
AccIII	TCCGGA	1 cut(s)	796
AclWI	GGATC	3 cut(s)	179, 338, 1007
AcoI	YGGCCR	3 cut(s)	681, 924, 936
AcsI	RAATTY	1 cut(s)	1018
AfaI	GTAC	3 cut(s)	516, 561, 582
AfiI	CCNNNNNNNGG	4 cut(s)	668, 735, 811, 910
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	804
AloI	GAACNNNNNNTCC	1 cut(s)	1048
AluBI	AGCT	6 cut(s)	365, 748, 775, 784, 886, 1051
AluI	AGCT	6 cut(s)	365, 748, 775, 784, 886, 1051
Alw26I	GTCTC	2 cut(s)	730, 803
AlwI	GGATC	3 cut(s)	179, 338, 1007
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	5 cut(s)	681, 753, 897, 924, 936
ApeKI	GCWGC	2 cut(s)	53, 86
ApoI	RAATTY	1 cut(s)	1018
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	4 cut(s)	185, 760, 984, 991
AspS9I	GGNCC	5 cut(s)	261, 589, 627, 753, 897
AsuC2I	CCSGG	3 cut(s)	617, 730, 974
AsuII	TTCGAA	1 cut(s)	778
AvaII	GGWCC	3 cut(s)	261, 589, 627
BalI	TGGCCA	2 cut(s)	683, 938
BbvCI	CCTCAGC	1 cut(s)	1052
BbvI	GCAGC	2 cut(s)	65, 98
BccI	CCATC	4 cut(s)	310, 601, 908, 1076
BceAI	ACGGC	2 cut(s)	640, 911
BcgI	CGANNNNNNTGC	2 cut(s)	684, 718
BciT130I	CCWGG	1 cut(s)	806
BcnI	CCSGG	3 cut(s)	617, 730, 974
BcoDI	GTCTC	2 cut(s)	730, 803
BfaI	CTAG	4 cut(s)	17, 273, 467, 1043
BfmI	CTRYAG	1 cut(s)	835
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
BlpI	GCTNAGC	1 cut(s)	978
BlsI	GCNGC	5 cut(s)	55, 88, 609, 757, 769
Bme1390I	CCNGG	4 cut(s)	617, 730, 806, 974
Bme18I	GGWCC	3 cut(s)	261, 589, 627
BmgT120I	GGNCC	5 cut(s)	261, 589, 627, 753, 897
BmiI	GGNNCC	5 cut(s)	60, 591, 708, 898, 1066
BmrFI	CCNGG	4 cut(s)	617, 730, 806, 974
BmsI	GCATC	4 cut(s)	40, 90, 662, 704
BpmI	CTGGAG	1 cut(s)	827
Bpu10I	CCTNAGC	1 cut(s)	1052
Bpu1102I	GCTNAGC	1 cut(s)	978
Bpu14I	TTCGAA	1 cut(s)	778
BpuMI	CCSGG	3 cut(s)	617, 730, 974
BsaAI	YACGTR	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	7 cut(s)	62, 690, 702, 729, 768, 852, 909
BsaWI	WCCGGW	3 cut(s)	629, 796, 1071
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	4 cut(s)	668, 735, 811, 910
Bse3DI	GCAATG	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	806
BseDI	CCNNGG	7 cut(s)	62, 690, 702, 729, 768, 852, 909
BseGI	GGATG	5 cut(s)	279, 562, 677, 900, 1068
BseLI	CCNNNNNNNGG	4 cut(s)	668, 735, 811, 910
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	969, 1043
BseRI	GAGGAG	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	65, 98
BseYI	CCCAGC	1 cut(s)	886
Bsh1236I	CGCG	3 cut(s)	183, 758, 770
Bsh1285I	CGRYCG	1 cut(s)	973
BshFI	GGCC	5 cut(s)	683, 755, 899, 926, 938
BsiEI	CGRYCG	1 cut(s)	973
BsiSI	CCGG	6 cut(s)	616, 630, 729, 797, 973, 1072
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	668, 735, 811, 910
BsmAI	GTCTC	2 cut(s)	730, 803
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	5 cut(s)	683, 755, 899, 926, 938
Bso31I	GGTCTC	1 cut(s)	730
Bsp119I	TTCGAA	1 cut(s)	778
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	4 cut(s)	171, 343, 463, 1012
Bsp1720I	GCTNAGC	1 cut(s)	978
Bsp19I	CCATGG	2 cut(s)	62, 852
BspANI	GGCC	5 cut(s)	683, 755, 899, 926, 938
BspCNI	CTCAG	2 cut(s)	970, 1044
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	3 cut(s)	183, 758, 770
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	5 cut(s)	60, 591, 708, 898, 1066
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	3 cut(s)	179, 338, 1007
BspT104I	TTCGAA	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	730
BsrBI	CCGCTC	1 cut(s)	874
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	7 cut(s)	62, 690, 702, 729, 768, 852, 909
BssMI	GATC	4 cut(s)	171, 343, 463, 1012
BssT1I	CCWWGG	3 cut(s)	62, 852, 909
Bst2UI	CCWGG	1 cut(s)	806
Bst4CI	ACNGT	4 cut(s)	413, 426, 443, 585
Bst6I	CTCTTC	1 cut(s)	855
BstAPI	GCANNNNNTGC	1 cut(s)	997
BstBAI	YACGTR	1 cut(s)	536
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	2 cut(s)	924, 993
BstDEI	CTNAG	2 cut(s)	978, 1052
BstDSI	CCRYGG	3 cut(s)	62, 768, 852
BstF5I	GGATG	5 cut(s)	279, 562, 677, 900, 1068
BstFNI	CGCG	3 cut(s)	183, 758, 770
BstHHI	GCGC	4 cut(s)	185, 760, 984, 991
BstKTI	GATC	4 cut(s)	174, 346, 466, 1015
BstMAI	GTCTC	2 cut(s)	730, 803
BstMBI	GATC	4 cut(s)	171, 343, 463, 1012
BstMCI	CGRYCG	1 cut(s)	973
BstMWI	GCNNNNNNNGC	7 cut(s)	643, 652, 745, 764, 781, 988, 997
BstNI	CCWGG	1 cut(s)	806
BstSCI	CCNGG	4 cut(s)	615, 728, 804, 972
BstSFI	CTRYAG	1 cut(s)	835
BstSNI	TACGTA	1 cut(s)	536
BstUI	CGCG	3 cut(s)	183, 758, 770
BstV1I	GCAGC	2 cut(s)	65, 98
BstX2I	RGATCY	2 cut(s)	171, 343
BstYI	RGATCY	2 cut(s)	171, 343
BsuRI	GGCC	5 cut(s)	683, 755, 899, 926, 938
BtgI	CCRYGG	3 cut(s)	62, 768, 852
BtgZI	GCGATG	1 cut(s)	991
BtsCI	GGATG	5 cut(s)	279, 562, 677, 900, 1068
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	924, 993
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	4 cut(s)	185, 760, 984, 991
Cfr13I	GGNCC	5 cut(s)	261, 589, 627, 753, 897
Cfr42I	CCGCGG	1 cut(s)	771
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	515, 560, 581
CviAII	CATG	6 cut(s)	63, 236, 602, 787, 853, 985
CviQI	GTAC	3 cut(s)	515, 560, 581
DdeI	CTNAG	2 cut(s)	978, 1052
DpnI	GATC	4 cut(s)	173, 345, 465, 1014
DpnII	GATC	4 cut(s)	171, 343, 463, 1012
EaeI	YGGCCR	3 cut(s)	681, 924, 936
Eam1104I	CTCTTC	1 cut(s)	855
EarI	CTCTTC	1 cut(s)	855
EciI	GGCGGA	1 cut(s)	872
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	3 cut(s)	62, 852, 909
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	261, 589, 627
EcoRI	GAATTC	1 cut(s)	1018
EcoRII	CCWGG	1 cut(s)	804
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	62, 852, 909
ErhI	CCWWGG	3 cut(s)	62, 852, 909
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	6 cut(s)	66, 239, 605, 790, 856, 988
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	6 cut(s)	62, 235, 601, 786, 852, 984
FauI	CCCGC	4 cut(s)	228, 879, 912, 993
Fnu4HI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
FokI	GGATG	5 cut(s)	266, 569, 684, 887, 1055
Fsp4HI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
FspBI	CTAG	4 cut(s)	17, 273, 467, 1043
GlaI	GCGC	4 cut(s)	184, 759, 983, 990
GluI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
GsaI	CCCAGC	1 cut(s)	890
GsuI	CTGGAG	1 cut(s)	827
HaeIII	GGCC	5 cut(s)	683, 755, 899, 926, 938
HapII	CCGG	6 cut(s)	616, 630, 729, 797, 973, 1072
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	4 cut(s)	185, 760, 984, 991
Hin1II	CATG	6 cut(s)	66, 239, 605, 790, 856, 988
Hin6I	GCGC	4 cut(s)	183, 758, 982, 989
HinP1I	GCGC	4 cut(s)	183, 758, 982, 989
HinfI	GANTC	2 cut(s)	253, 451
HpaII	CCGG	6 cut(s)	616, 630, 729, 797, 973, 1072
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	7 cut(s)	261, 387, 403, 418, 691, 706, 1017
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	4 cut(s)	413, 426, 443, 585
HpyCH4IV	ACGT	2 cut(s)	484, 535
HpyCH4V	TGCA	2 cut(s)	53, 103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	643, 652, 745, 764, 781, 988, 997
HpyF3I	CTNAG	2 cut(s)	978, 1052
HpySE526I	ACGT	2 cut(s)	484, 535
Hsp92II	CATG	6 cut(s)	66, 239, 605, 790, 856, 988
HspAI	GCGC	4 cut(s)	183, 758, 982, 989
Kpn2I	TCCGGA	1 cut(s)	796
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	4 cut(s)	171, 343, 463, 1012
LmnI	GCTCC	2 cut(s)	46, 772
Lsp1109I	GCAGC	2 cut(s)	65, 98
LweI	GCATC	4 cut(s)	40, 90, 662, 704
MaeI	CTAG	4 cut(s)	17, 273, 467, 1043
MaeII	ACGT	2 cut(s)	484, 535
MaeIII	GTNAC	2 cut(s)	426, 544
MalI	GATC	4 cut(s)	173, 345, 465, 1014
MbiI	CCGCTC	1 cut(s)	874
MboI	GATC	4 cut(s)	171, 343, 463, 1012
MboII	GAAGA	4 cut(s)	130, 248, 470, 872
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	2 cut(s)	171, 343
MlsI	TGGCCA	2 cut(s)	683, 938
MluCI	AATT	4 cut(s)	36, 68, 470, 1018
MluNI	TGGCCA	2 cut(s)	683, 938
Mox20I	TGGCCA	2 cut(s)	683, 938
MroI	TCCGGA	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	825
MscI	TGGCCA	2 cut(s)	683, 938
MseI	TTAA	1 cut(s)	878
MslI	CAYNNNNRTG	1 cut(s)	284
Msp20I	TGGCCA	2 cut(s)	683, 938
MspA1I	CMGCKG	2 cut(s)	56, 770
MspI	CCGG	6 cut(s)	616, 630, 729, 797, 973, 1072
MspR9I	CCNGG	4 cut(s)	617, 730, 806, 974
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	806
MvnI	CGCG	3 cut(s)	183, 758, 770
MwoI	GCNNNNNNNGC	7 cut(s)	643, 652, 745, 764, 781, 988, 997
NciI	CCSGG	3 cut(s)	617, 730, 974
NcoI	CCATGG	2 cut(s)	62, 852
NdeII	GATC	4 cut(s)	171, 343, 463, 1012
NlaIII	CATG	6 cut(s)	66, 239, 605, 790, 856, 988
NlaIV	GGNNCC	5 cut(s)	60, 591, 708, 898, 1066
NmuCI	GTSAC	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	778
PagI	TCATGA	1 cut(s)	786
PaqCI	CACCTGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	253, 451
PkrI	GCNGC	5 cut(s)	55, 88, 609, 757, 769
Ppu21I	YACGTR	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	804
PspFI	CCCAGC	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	804
PspN4I	GGNNCC	5 cut(s)	60, 591, 708, 898, 1066
PspPI	GGNCC	5 cut(s)	261, 589, 627, 753, 897
PsuI	RGATCY	2 cut(s)	171, 343
RsaI	GTAC	3 cut(s)	516, 561, 582
RsaNI	GTAC	3 cut(s)	515, 560, 581
RseI	CAYNNNNRTG	1 cut(s)	284
SacII	CCGCGG	1 cut(s)	771
SaqAI	TTAA	1 cut(s)	878
SatI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
Sau3AI	GATC	4 cut(s)	171, 343, 463, 1012
Sau96I	GGNCC	5 cut(s)	261, 589, 627, 753, 897
ScrFI	CCNGG	4 cut(s)	617, 730, 806, 974
SfaNI	GCATC	4 cut(s)	40, 90, 662, 704
SfcI	CTRYAG	1 cut(s)	835
Sfr303I	CCGCGG	1 cut(s)	771
SfuI	TTCGAA	1 cut(s)	778
SgrBI	CCGCGG	1 cut(s)	771
SinI	GGWCC	3 cut(s)	261, 589, 627
SmiMI	CAYNNNNRTG	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	4 cut(s)	36, 68, 470, 1018
SspI	AATATT	2 cut(s)	717, 1039
SspMI	CTAG	4 cut(s)	17, 273, 467, 1043
StyD4I	CCNGG	4 cut(s)	615, 728, 804, 972
StyI	CCWWGG	3 cut(s)	62, 852, 909
TaaI	ACNGT	4 cut(s)	413, 426, 443, 585
TaiI	ACGT	2 cut(s)	487, 538
TaqI	TCGA	2 cut(s)	249, 778
TasI	AATT	4 cut(s)	36, 68, 470, 1018
TauI	GCSGC	3 cut(s)	610, 758, 770
TfiI	GAWTC	2 cut(s)	253, 451
Tru1I	TTAA	1 cut(s)	878
Tru9I	TTAA	1 cut(s)	878
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	53, 86
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	4 cut(s)	224, 280, 435, 803
TspGWI	ACGGA	2 cut(s)	184, 827
VpaK11BI	GGWCC	3 cut(s)	261, 589, 627
XapI	RAATTY	1 cut(s)	1018
XbaI	TCTAGA	3 cut(s)	16, 466, 1042
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	4 cut(s)	17, 273, 467, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.