Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019146

Physical Location & Seq

Genomic Coordinates Reverse (-)

38589 .. 39806

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15599

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATTGTAAAAGTTCTAGAATGGATATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACCCCTATGATGCAAGGAATAATGGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTATCATCCCGATGTTCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATCAAAGCTATTGAACATCAATGGTATCGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACGCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTGGAAGTGGACAATAGAGTGGTTGTACCAGCCAAAACTCATCTACGTATTATTGTAACACCGGCTGATGTACCTCACACTTCTTACGCTGTACCGTTGGTCCCATCTCCCCATGAGCCGCCCTTCCGGGTTGGCTGGACCGGATTGCCTAATCCGCTAAATGAGCCGTCGCCTTTTAGCGGATGCCCTCTGGCCATATCCGAGGCATCTACCTCGGAACCTATAATATTAGAGGTCTCCGGGGTTGGGCAGGACGAGCTGTGGGCCGCGCTGGAAGCCGCGGAGCTTCGAAAGCTGGAAGCCGATAAGCTTCGGCTTTCGAAGCTCATGAACTCTCCGGAATACCTGGAGACGGAGGAGGAACTCTTTCGCTTCTATAAACAGCAAAAAGCTATGGCGGAAGAGGTAGCCCCGCTCTTAAAAGAGCTGGGCTATGGGGCCATCCCGCCCAAGGAGATTAGGCTGGCCGTTGATATGGCCACCTATGATATGGGCGAGAGGCTTGGCAACGACCGGGCTGAGCGCATGGCGCACGCTCTGCGGGTCATCGCCGATCCTAATTCCCAATGCTTTATCAATATTCTAGATGAGCTGAGGAAGTTGGGTTCCATCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX2 COX2_TM

Protein Analysis

368

Amino Acids

41.81

Weight (kDa)

5.0

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX2_TM	PF02790	19 - 105	2.1e-29	Cytochrome C oxidase subunit II, transmembrane domain
COX2	PF00116	118 - 196	2.9e-22	Cytochrome C oxidase subunit II, periplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07695 ATMG01280
pyrus_communis	pycom461g00080
rosa_chinensis	RchiOBHm_MTg0498241
rosa_laevigata	RLG00000000359 RLG00000000373 RLG00000000389
rosa_roxburghii	Rroxscaffold_7G00202780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	904
AccII	CGCG	3 cut(s)	183, 758, 770
AccIII	TCCGGA	1 cut(s)	826
AclWI	GGATC	3 cut(s)	179, 338, 1037
AcoI	YGGCCR	3 cut(s)	681, 954, 966
AfaI	GTAC	3 cut(s)	516, 561, 582
AfiI	CCNNNNNNNGG	4 cut(s)	668, 735, 841, 940
AgsI	TTSAA	2 cut(s)	80, 371
AjnI	CCWGG	1 cut(s)	834
AloI	GAACNNNNNNTCC	1 cut(s)	1078
AluBI	AGCT	9 cut(s)	365, 748, 775, 784, 799, 814, 881, 916, 1081
AluI	AGCT	9 cut(s)	365, 748, 775, 784, 799, 814, 881, 916, 1081
Alw26I	GTCTC	2 cut(s)	730, 833
AlwI	GGATC	3 cut(s)	179, 338, 1037
Aor13HI	TCCGGA	1 cut(s)	826
AoxI	GGCC	5 cut(s)	681, 753, 927, 954, 966
ApeKI	GCWGC	2 cut(s)	53, 86
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	4 cut(s)	185, 760, 1014, 1021
AspS9I	GGNCC	5 cut(s)	261, 589, 627, 753, 927
AsuC2I	CCSGG	3 cut(s)	617, 730, 1004
AsuII	TTCGAA	2 cut(s)	778, 809
AvaII	GGWCC	3 cut(s)	261, 589, 627
BalI	TGGCCA	2 cut(s)	683, 968
BbvCI	CCTCAGC	1 cut(s)	1082
BbvI	GCAGC	2 cut(s)	65, 98
BccI	CCATC	4 cut(s)	310, 601, 938, 1106
BceAI	ACGGC	2 cut(s)	640, 941
BcgI	CGANNNNNNTGC	2 cut(s)	684, 718
BciT130I	CCWGG	1 cut(s)	836
BcnI	CCSGG	3 cut(s)	617, 730, 1004
BcoDI	GTCTC	2 cut(s)	730, 833
BfaI	CTAG	4 cut(s)	17, 273, 467, 1073
BisI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
BlpI	GCTNAGC	1 cut(s)	1008
BlsI	GCNGC	5 cut(s)	55, 88, 609, 757, 769
Bme1390I	CCNGG	4 cut(s)	617, 730, 836, 1004
Bme18I	GGWCC	3 cut(s)	261, 589, 627
BmgT120I	GGNCC	5 cut(s)	261, 589, 627, 753, 927
BmiI	GGNNCC	5 cut(s)	60, 591, 708, 928, 1096
BmrFI	CCNGG	4 cut(s)	617, 730, 836, 1004
BmsI	GCATC	4 cut(s)	40, 90, 662, 704
BpmI	CTGGAG	1 cut(s)	857
Bpu10I	CCTNAGC	1 cut(s)	1082
Bpu1102I	GCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	2 cut(s)	778, 809
BpuMI	CCSGG	3 cut(s)	617, 730, 1004
BsaAI	YACGTR	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	6 cut(s)	62, 690, 702, 729, 768, 939
BsaWI	WCCGGW	3 cut(s)	629, 826, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	4 cut(s)	668, 735, 841, 940
Bse118I	RCCGGY	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	1 cut(s)	836
BseDI	CCNNGG	6 cut(s)	62, 690, 702, 729, 768, 939
BseGI	GGATG	4 cut(s)	279, 677, 930, 1098
BseLI	CCNNNNNNNGG	4 cut(s)	668, 735, 841, 940
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	999, 1073
BseRI	GAGGAG	1 cut(s)	860
BseXI	GCAGC	2 cut(s)	65, 98
BseYI	CCCAGC	1 cut(s)	916
Bsh1236I	CGCG	3 cut(s)	183, 758, 770
Bsh1285I	CGRYCG	1 cut(s)	1003
BshFI	GGCC	5 cut(s)	683, 755, 929, 956, 968
BsiEI	CGRYCG	1 cut(s)	1003
BsiSI	CCGG	7 cut(s)	551, 616, 630, 729, 827, 1003, 1102
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	668, 735, 841, 940
BsmAI	GTCTC	2 cut(s)	730, 833
BsmBI	CGTCTC	1 cut(s)	833
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	5 cut(s)	683, 755, 929, 956, 968
Bso31I	GGTCTC	1 cut(s)	730
Bsp119I	TTCGAA	2 cut(s)	778, 809
Bsp13I	TCCGGA	1 cut(s)	826
Bsp143I	GATC	4 cut(s)	171, 343, 463, 1042
Bsp1720I	GCTNAGC	1 cut(s)	1008
Bsp19I	CCATGG	1 cut(s)	62
BspANI	GGCC	5 cut(s)	683, 755, 929, 956, 968
BspCNI	CTCAG	2 cut(s)	1000, 1074
BspEI	TCCGGA	1 cut(s)	826
BspFNI	CGCG	3 cut(s)	183, 758, 770
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	5 cut(s)	60, 591, 708, 928, 1096
BspPI	GGATC	3 cut(s)	179, 338, 1037
BspT104I	TTCGAA	2 cut(s)	778, 809
BspTNI	GGTCTC	1 cut(s)	730
BsrBI	CCGCTC	1 cut(s)	904
BsrDI	GCAATG	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	550
BssECI	CCNNGG	6 cut(s)	62, 690, 702, 729, 768, 939
BssMI	GATC	4 cut(s)	171, 343, 463, 1042
BssT1I	CCWWGG	2 cut(s)	62, 939
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	4 cut(s)	413, 426, 443, 585
Bst6I	CTCTTC	1 cut(s)	885
BstAPI	GCANNNNNTGC	1 cut(s)	1027
BstBAI	YACGTR	1 cut(s)	536
BstBI	TTCGAA	2 cut(s)	778, 809
BstC8I	GCNNGC	2 cut(s)	954, 1023
BstDEI	CTNAG	2 cut(s)	1008, 1082
BstDSI	CCRYGG	2 cut(s)	62, 768
BstF5I	GGATG	4 cut(s)	279, 677, 930, 1098
BstFNI	CGCG	3 cut(s)	183, 758, 770
BstHHI	GCGC	4 cut(s)	185, 760, 1014, 1021
BstKTI	GATC	4 cut(s)	174, 346, 466, 1045
BstMAI	GTCTC	2 cut(s)	730, 833
BstMBI	GATC	4 cut(s)	171, 343, 463, 1042
BstMCI	CGRYCG	1 cut(s)	1003
BstMWI	GCNNNNNNNGC	8 cut(s)	643, 652, 745, 764, 781, 811, 1018, 1027
BstNI	CCWGG	1 cut(s)	836
BstSCI	CCNGG	4 cut(s)	615, 728, 834, 1002
BstSNI	TACGTA	1 cut(s)	536
BstUI	CGCG	3 cut(s)	183, 758, 770
BstV1I	GCAGC	2 cut(s)	65, 98
BstX2I	RGATCY	2 cut(s)	171, 343
BstYI	RGATCY	2 cut(s)	171, 343
BsuRI	GGCC	5 cut(s)	683, 755, 929, 956, 968
BtgI	CCRYGG	2 cut(s)	62, 768
BtgZI	GCGATG	1 cut(s)	1021
BtsCI	GGATG	4 cut(s)	279, 677, 930, 1098
Cac8I	GCNNGC	2 cut(s)	954, 1023
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	4 cut(s)	185, 760, 1014, 1021
Cfr10I	RCCGGY	1 cut(s)	550
Cfr13I	GGNCC	5 cut(s)	261, 589, 627, 753, 927
Cfr42I	CCGCGG	1 cut(s)	771
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	515, 560, 581
CviAII	CATG	5 cut(s)	63, 236, 602, 817, 1015
CviQI	GTAC	3 cut(s)	515, 560, 581
DdeI	CTNAG	2 cut(s)	1008, 1082
DpnI	GATC	4 cut(s)	173, 345, 465, 1044
DpnII	GATC	4 cut(s)	171, 343, 463, 1042
EaeI	YGGCCR	3 cut(s)	681, 954, 966
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
EciI	GGCGGA	1 cut(s)	902
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	2 cut(s)	62, 939
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	261, 589, 627
EcoRII	CCWGG	1 cut(s)	834
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	62, 939
ErhI	CCWWGG	2 cut(s)	62, 939
Esp3I	CGTCTC	1 cut(s)	833
FaeI	CATG	5 cut(s)	66, 239, 605, 820, 1018
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	5 cut(s)	62, 235, 601, 816, 1014
FauI	CCCGC	4 cut(s)	228, 909, 942, 1023
Fnu4HI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
FokI	GGATG	4 cut(s)	266, 684, 917, 1085
Fsp4HI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
FspBI	CTAG	4 cut(s)	17, 273, 467, 1073
GlaI	GCGC	4 cut(s)	184, 759, 1013, 1020
GluI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
GsaI	CCCAGC	1 cut(s)	920
GsuI	CTGGAG	1 cut(s)	857
HaeIII	GGCC	5 cut(s)	683, 755, 929, 956, 968
HapII	CCGG	7 cut(s)	551, 616, 630, 729, 827, 1003, 1102
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	4 cut(s)	185, 760, 1014, 1021
Hin1II	CATG	5 cut(s)	66, 239, 605, 820, 1018
Hin6I	GCGC	4 cut(s)	183, 758, 1012, 1019
HinP1I	GCGC	4 cut(s)	183, 758, 1012, 1019
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	2 cut(s)	253, 451
HpaII	CCGG	7 cut(s)	551, 616, 630, 729, 827, 1003, 1102
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	7 cut(s)	150, 261, 387, 403, 418, 691, 706
Hpy8I	GTNNAC	1 cut(s)	499
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	4 cut(s)	413, 426, 443, 585
HpyCH4IV	ACGT	2 cut(s)	484, 535
HpyCH4V	TGCA	2 cut(s)	53, 103
HpyF10VI	GCNNNNNNNGC	8 cut(s)	643, 652, 745, 764, 781, 811, 1018, 1027
HpyF3I	CTNAG	2 cut(s)	1008, 1082
HpySE526I	ACGT	2 cut(s)	484, 535
Hsp92II	CATG	5 cut(s)	66, 239, 605, 820, 1018
HspAI	GCGC	4 cut(s)	183, 758, 1012, 1019
Kpn2I	TCCGGA	1 cut(s)	826
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	4 cut(s)	171, 343, 463, 1042
LmnI	GCTCC	2 cut(s)	46, 772
Lsp1109I	GCAGC	2 cut(s)	65, 98
LweI	GCATC	4 cut(s)	40, 90, 662, 704
MaeI	CTAG	4 cut(s)	17, 273, 467, 1073
MaeII	ACGT	2 cut(s)	484, 535
MaeIII	GTNAC	2 cut(s)	426, 544
MalI	GATC	4 cut(s)	173, 345, 465, 1044
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	4 cut(s)	171, 343, 463, 1042
MboII	GAAGA	4 cut(s)	130, 248, 470, 902
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	2 cut(s)	171, 343
MlsI	TGGCCA	2 cut(s)	683, 968
MluCI	AATT	4 cut(s)	36, 68, 470, 1048
MluNI	TGGCCA	2 cut(s)	683, 968
Mox20I	TGGCCA	2 cut(s)	683, 968
MroI	TCCGGA	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	2 cut(s)	683, 968
MseI	TTAA	1 cut(s)	908
MslI	CAYNNNNRTG	1 cut(s)	284
Msp20I	TGGCCA	2 cut(s)	683, 968
MspA1I	CMGCKG	2 cut(s)	56, 770
MspI	CCGG	7 cut(s)	551, 616, 630, 729, 827, 1003, 1102
MspR9I	CCNGG	4 cut(s)	617, 730, 836, 1004
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	836
MvnI	CGCG	3 cut(s)	183, 758, 770
MwoI	GCNNNNNNNGC	8 cut(s)	643, 652, 745, 764, 781, 811, 1018, 1027
NciI	CCSGG	3 cut(s)	617, 730, 1004
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	171, 343, 463, 1042
NlaIII	CATG	5 cut(s)	66, 239, 605, 820, 1018
NlaIV	GGNNCC	5 cut(s)	60, 591, 708, 928, 1096
NmuCI	GTSAC	1 cut(s)	426
NspV	TTCGAA	2 cut(s)	778, 809
PagI	TCATGA	1 cut(s)	816
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	253, 451
PkrI	GCNGC	5 cut(s)	55, 88, 609, 757, 769
Ppu21I	YACGTR	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	834
PspFI	CCCAGC	1 cut(s)	916
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	60, 591, 708, 928, 1096
PspPI	GGNCC	5 cut(s)	261, 589, 627, 753, 927
PsuI	RGATCY	2 cut(s)	171, 343
RsaI	GTAC	3 cut(s)	516, 561, 582
RsaNI	GTAC	3 cut(s)	515, 560, 581
RseI	CAYNNNNRTG	1 cut(s)	284
SacII	CCGCGG	1 cut(s)	771
SaqAI	TTAA	1 cut(s)	908
SatI	GCNGC	5 cut(s)	54, 87, 608, 756, 768
Sau3AI	GATC	4 cut(s)	171, 343, 463, 1042
Sau96I	GGNCC	5 cut(s)	261, 589, 627, 753, 927
ScrFI	CCNGG	4 cut(s)	617, 730, 836, 1004
SfaNI	GCATC	4 cut(s)	40, 90, 662, 704
Sfr303I	CCGCGG	1 cut(s)	771
SfuI	TTCGAA	2 cut(s)	778, 809
SgrBI	CCGCGG	1 cut(s)	771
SinI	GGWCC	3 cut(s)	261, 589, 627
SmiMI	CAYNNNNRTG	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	4 cut(s)	36, 68, 470, 1048
SspI	AATATT	2 cut(s)	717, 1069
SspMI	CTAG	4 cut(s)	17, 273, 467, 1073
StyD4I	CCNGG	4 cut(s)	615, 728, 834, 1002
StyI	CCWWGG	2 cut(s)	62, 939
TaaI	ACNGT	4 cut(s)	413, 426, 443, 585
TaiI	ACGT	2 cut(s)	487, 538
TaqI	TCGA	3 cut(s)	249, 778, 809
TasI	AATT	4 cut(s)	36, 68, 470, 1048
TauI	GCSGC	3 cut(s)	610, 758, 770
TfiI	GAWTC	2 cut(s)	253, 451
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	53, 86
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	4 cut(s)	224, 280, 435, 833
TspGWI	ACGGA	2 cut(s)	184, 857
VpaK11BI	GGWCC	3 cut(s)	261, 589, 627
XbaI	TCTAGA	3 cut(s)	16, 466, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	4 cut(s)	17, 273, 467, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.