FvH4_1g01920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0019647
Physical Location & Seq
Forward (+)
1001076 .. 1001654
579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01920.t1

Sequence Viewer

Length: 309 bp
ATGGCCTCAAAATCACAAAACACCTCCTTGAACCGTCGTACATGTCTATGTTCACCCTCAAAACATCCAGGTTCTTTCAGGTGCAGTTTGCACAGAAGCAATGTGAATAATAAGAGGGCTATAGTTAGCAGTAGTAGAGCTGCAAAAGATGTTGTAAAACCAAATTCGATCAAAGAAATCCTTCTCCAAGCTATCAGGCCGTCCTCGAGTCAGGATCTTCAAAGAAGGAGAAAGTTCCAGCCAAAGGCTAGCAGGTTTTTCTTGATGAGTAACAGCAGAAATGGGATTGCAGATTCTCGATCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.46

Weight (kDa)

11.67

Isoelectric Point (pI)

89.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019647)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01920
prunus_persica Prupe.7G256800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0086941
rosa_roxburghii Rroxscaffold_2G00153990
rosa_samantha Rh2AG023600 Rh2BG024300 Rh2CG024500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 2 cut(s) 31, 221
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 2 cut(s) 140, 191
AluI AGCT 2 cut(s) 140, 191
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 3, 197
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 45
AsuNHI GCTAGC 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 205
BbvI GCAGC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 69
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 69
BmtI GCTAGC 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 5, 199
BsiHKCI CYCGRG 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 244
BsnI GGCC 2 cut(s) 5, 199
BsoBI CYCGRG 1 cut(s) 205
Bsp143I GATC 3 cut(s) 168, 214, 299
BspANI GGCC 2 cut(s) 5, 199
BspMI ACCTGC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 106
BssMI GATC 3 cut(s) 168, 214, 299
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 3 cut(s) 171, 217, 302
BstMBI GATC 3 cut(s) 168, 214, 299
BstNI CCWGG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 2 cut(s) 5, 199
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 42
CviJI RGCY 7 cut(s) 5, 119, 140, 191, 199, 241, 248
CviKI_1 RGCY 7 cut(s) 5, 119, 140, 191, 199, 241, 248
CviQI GTAC 1 cut(s) 39
DpnI GATC 3 cut(s) 170, 216, 301
DpnII GATC 3 cut(s) 168, 214, 299
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 45
FaiI YATR 3 cut(s) 43, 49, 122
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FatI CATG 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 5, 199
Hin1II CATG 1 cut(s) 45
HinfI GANTC 2 cut(s) 208, 293
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 3 cut(s) 212, 262, 297
Hpy8I GTNNAC 1 cut(s) 53
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 191, 219
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 4 cut(s) 84, 91, 143, 290
Hsp92II CATG 1 cut(s) 45
Kzo9I GATC 3 cut(s) 168, 214, 299
LpnPI CCDG 7 cut(s) 54, 64, 81, 181, 197, 238, 251
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 269
MalI GATC 3 cut(s) 170, 216, 301
MboI GATC 3 cut(s) 168, 214, 299
MboII GAAGA 1 cut(s) 209
MflI RGATCY 1 cut(s) 214
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 5 cut(s) 16, 34, 67, 108, 214
MroXI GAANNNNTTC 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 69
NdeII GATC 3 cut(s) 168, 214, 299
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 1 cut(s) 45
NspI RCATGY 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 205
PciI ACATGT 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PscI ACATGT 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspXI VCTCGAGB 1 cut(s) 205
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 46
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 168, 214, 299
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 69
SetI ASST 6 cut(s) 26, 73, 83, 142, 193, 257
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 167, 206, 298
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 293
TseI GCWGC 1 cut(s) 140
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 45
XhoI CTCGAG 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.