Prupe.7G256800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0019647
Physical Location & Seq
Forward (+)
21493176 .. 21494053
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G256800.1

Sequence Viewer

Length: 300 bp
ATGGCCTCAAAAACTGCAACCTGCATTTCAAAATCACACAACTCAAACCGCACATGTTTATGTTCACCCACCTCACATCCTGGATCTTTCAGGTGCAGTTTGCACAGAAATTCCAATAAGCAGCAACCCATTATCAGTAATCCTGCATTTGTTGTTAAACCAAATTCCATTAAGGGGTGCCTGCTCCTTCAGCTCATCAAGCCCTCCAGCCATGATCTTCAAAGGAGAAGAAAGTTCCAGCCCAGGCCCACCAGATTCTGTTTAATGAATAACACCAGAAATCAGCTTGCAGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

11.26

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019647)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01920
prunus_persica Prupe.7G256800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0086941
rosa_roxburghii Rroxscaffold_2G00153990
rosa_samantha Rh2AG023600 Rh2BG024300 Rh2CG024500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
AccB1I GGYRCC 1 cut(s) 177
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 109, 163
AcuI CTGAAG 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 174
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 2 cut(s) 30, 221
AjnI CCWGG 2 cut(s) 79, 242
AluBI AGCT 2 cut(s) 193, 286
AluI AGCT 2 cut(s) 193, 286
AlwI GGATC 1 cut(s) 91
AlwNI CAGNNNCTG 1 cut(s) 258
AoxI GGCC 2 cut(s) 3, 245
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 2 cut(s) 109, 163
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 133
BciT130I CCWGG 2 cut(s) 81, 244
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 81, 244
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 179
BmrFI CCNGG 2 cut(s) 81, 244
BpmI CTGGAG 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 81, 244
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 133
BsgI GTGCAG 1 cut(s) 115
BshFI GGCC 2 cut(s) 5, 247
BshNI GGYRCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 174
BsnI GGCC 2 cut(s) 5, 247
Bsp143I GATC 2 cut(s) 83, 214
BspACI CCGC 1 cut(s) 49
BspANI GGCC 2 cut(s) 5, 247
BspLI GGNNCC 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 1 cut(s) 91
BspT107I GGYRCC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 2 cut(s) 83, 214
Bst2UI CCWGG 2 cut(s) 81, 244
BstC8I GCNNGC 2 cut(s) 182, 288
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 2 cut(s) 86, 217
BstMBI GATC 2 cut(s) 83, 214
BstMWI GCNNNNNNNGC 2 cut(s) 190, 199
BstNI CCWGG 2 cut(s) 81, 244
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 79, 242
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 5, 247
BtsCI GGATG 1 cut(s) 76
BveI ACCTGC 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 182, 288
CaiI CAGNNNCTG 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 246
CviAII CATG 2 cut(s) 54, 212
CviJI RGCY 7 cut(s) 5, 193, 202, 210, 241, 247, 286
CviKI_1 RGCY 7 cut(s) 5, 193, 202, 210, 241, 247, 286
DpnI GATC 2 cut(s) 85, 216
DpnII GATC 2 cut(s) 83, 214
Eco57I CTGAAG 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 79, 242
FaeI CATG 2 cut(s) 57, 215
FaiI YATR 3 cut(s) 55, 61, 213
FatI CATG 2 cut(s) 53, 211
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 2 cut(s) 5, 247
Hin1II CATG 2 cut(s) 57, 215
HinfI GANTC 1 cut(s) 255
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 297
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 197
HpyCH4V TGCA 6 cut(s) 17, 24, 96, 103, 146, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 199
Hsp92II CATG 2 cut(s) 57, 215
Kzo9I GATC 2 cut(s) 83, 214
LmnI GCTCC 1 cut(s) 189
Lsp1109I GCAGC 1 cut(s) 133
MalI GATC 2 cut(s) 85, 216
MboI GATC 2 cut(s) 83, 214
MboII GAAGA 2 cut(s) 209, 240
MflI RGATCY 1 cut(s) 83
MluCI AATT 2 cut(s) 109, 163
MnlI CCTC 3 cut(s) 16, 82, 214
MseI TTAA 3 cut(s) 156, 171, 263
MslI CAYNNNNRTG 1 cut(s) 58
MspR9I CCNGG 2 cut(s) 81, 244
MvaI CCWGG 2 cut(s) 81, 244
MwoI GCNNNNNNNGC 2 cut(s) 190, 199
NdeII GATC 2 cut(s) 83, 214
NlaIII CATG 2 cut(s) 57, 215
NlaIV GGNNCC 1 cut(s) 179
NspI RCATGY 1 cut(s) 57
PciI ACATGT 1 cut(s) 53
PfeI GAWTC 1 cut(s) 255
PfoI TCCNGGA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 123
PscI ACATGT 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 79, 242
PspGI CCWGG 2 cut(s) 79, 242
PspN4I GGNNCC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 246
PstNI CAGNNNCTG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 58
SaqAI TTAA 3 cut(s) 156, 171, 263
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 2 cut(s) 83, 214
Sau96I GGNCC 1 cut(s) 246
ScrFI CCNGG 2 cut(s) 81, 244
SetI ASST 5 cut(s) 23, 74, 95, 195, 288
SmiMI CAYNNNNRTG 1 cut(s) 58
Sse9I AATT 2 cut(s) 109, 163
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 79, 242
TasI AATT 2 cut(s) 109, 163
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 3 cut(s) 156, 171, 263
Tru9I TTAA 3 cut(s) 156, 171, 263
TseI GCWGC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 281
XapI RAATTY 2 cut(s) 109, 163
XceI RCATGY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.