FvH4_1g05690

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018342
Physical Location & Seq
Reverse (-)
3008097 .. 3010897
2801 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05690.t1

Sequence Viewer

Length: 1656 bp
ATGACCAGGAAGAAACATAGAATGAACGACAAAGACCTGGATGAGGTAGAGGACTGGTGCTTTGTTTGCAAAGATGGTGGAGCATTGAGGGTGTGTGACTACCGAGGCTGCACCAAAGTCTACCACGCCAAATGTGTGCACAAGACTAATTCTTTTCTCAAAACCAAGAAGCGATGGGTTTGTGATCACCACTCTTGTTCAGTGTGCCACTCCCAAATCGAAATCAGCTTCTCTTGCCTTCTCTGCACATATTCGGTGTGTGACAATTGCCGCAAAAGTAATGATAGCTCTGAGTTTGCGGTGGTAAGAGGGAAGGAGAATGTAGGGCTCTGTGTGGATTGTCTAGAGCTTGTTAGGTTTGCGGAGAATGCGGAGTGTGATAGAGATGGAGATAAGTTAGACTTTGAGGATCCGGAGACATTCGAATATGGATTCAAAGAGTGTTGGGAGATCCTCAAGGAAAAGGATGGATTGACTTTAAATGATATATATGACGAAAGAAGAGAGATGATACATGATGAGGAAATTTCATTGAAAGAACTTCTGATGCAGAGACTAAACAAGCAAAAATCAGATTTTGATTCTAAGGAAAAGCCTGAGAATGTGGTTAGTCTTGGTTCTCATATGAATGCAGAAAGTGGGATACACAAGGAAGATGGTGATGAAACTACACAAATAGATCATGTGTTATGCAAACACAATAAGCGAAAATTGATCTTAGATTGTGAGACATCATCTGAATCTGAGAAAAAGGAGCCACATGTAGAGAATGGGATGAGTGAGGATTATGAAGATAATATTCCATTGAAAGATCGTCTCGCGCGCAGAATACTCAAGAAGCCAAAGTTGGTAATCCCACATTATGTGAAACCTTTTGTTTCTGTGGAAAAGGAGCCACATGTGGAGAATAGTCTTAGTGAGGATGATGAAGATATAACGCTGAAAGATTGTCTCGCCCGCAGATTACCCAAGAAGCCAAAATTGGTGATCCCATCTTATGTGAAACCTTTTGTTTCTGAGGAAAAGAAGAAAGTGATGTATCATTATTGCACTAGGAATGCCAAAGAAAGTTGTTTTGCATCAGTAGTTGTTAGCAATATGAAGCTTGTCTACTTACGGAGGAGCTTAGTGGAGGAGTTGATGTCAACACAACCTGATAACTGGGAAAGAAAGGTAGTGGGAAGCTATGTAAGAGTGGAAAATGACCTTGATGACTATTTCCAGGGAAATTCTTCATACCAACTTACACAAGTGAAAGGCATAACTAGGAAACAGAACAGTGGAGAAATTCTTCTTCACCTGCTTGCTAGAGATGTTCTCATTTCCTCACTATCAGATTGCGACTTTACTGAGGAAGAATGTAGGAATTTGCAAGAAATGGTAGAGAATCATTTGGTGAGGAGACCTACTGTTGTTGAGATTGAACACAAAGCGAGACAACTGCATGAGGATATTAAGAAAGACTGGATTGAGAGAGAGTTCCTCAGGTTAGAGACTTGCATTCGTTCAGAAACAAATCAATATGGATGGATCAGCACAGGGTTATCAAAGTATATAGAACTACGTGAAATGCTGAAGCAAACATTAGAACAGGGAAAACTCTTGCACGAGGAGCCACAAATCATTACAGACGTCTTGAGTTTGAGTGACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3 SWIB

Protein Analysis

552

Amino Acids

64.3

Weight (kDa)

5.61

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plus-3 PF03126 366 - 460 8.1e-12 Plus-3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018342)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g05690 FvH4_4g12500
rosa_chinensis RchiOBHm_Chr2g0091341
rosa_laevigata RLG00000016213
rosa_rugosa Rorug02G0016500
rosa_samantha Rh2AG061400 Rh2BG060800 Rh2CG062800 Rh2DG061400
rosa_wichuraiana Rw2G004830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1308
AatII GACGTC 1 cut(s) 1635
Acc36I ACCTGC 1 cut(s) 1308
AccI GTMKAC 2 cut(s) 120, 1110
AccII CGCG 2 cut(s) 821, 823
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 5 cut(s) 271, 299, 362, 371, 958
AclWI GGATC 5 cut(s) 404, 417, 445, 982, 1538
AcsI RAATTY 4 cut(s) 525, 1228, 1287, 1366
AcuI CTGAAG 1 cut(s) 1595
AcyI GRCGYC 1 cut(s) 1632
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 2 cut(s) 760, 898
AgsI TTSAA 4 cut(s) 436, 535, 808, 1424
AjnI CCWGG 3 cut(s) 5, 36, 1221
AjuI GAANNNNNNNTTGG 4 cut(s) 830, 862, 965, 997
AluBI AGCT 6 cut(s) 228, 288, 349, 1105, 1125, 1185
AluI AGCT 6 cut(s) 228, 288, 349, 1105, 1125, 1185
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 8 cut(s) 410, 547, 722, 821, 956, 1396, 1429, 1487
Alw44I GTGCAC 1 cut(s) 137
AlwI GGATC 5 cut(s) 404, 417, 445, 982, 1538
Aor13HI TCCGGA 1 cut(s) 412
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 4 cut(s) 525, 1228, 1287, 1366
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 2 cut(s) 1231, 1290
AspLEI GCGC 2 cut(s) 823, 825
AsuHPI GGTGA 5 cut(s) 179, 671, 997, 1289, 1408
AsuII TTCGAA 1 cut(s) 423
AxyI CCTNAGG 1 cut(s) 1484
BaeGI GKGCMC 1 cut(s) 141
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 1094, 1126
BauI CACGAG 1 cut(s) 1607
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 95
BccI CCATC 7 cut(s) 68, 168, 380, 461, 650, 1000, 1521
BcgI CGANNNNNNTGC 2 cut(s) 1423, 1457
BciT130I CCWGG 3 cut(s) 7, 38, 1223
BciVI GTATCC 1 cut(s) 636
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 8 cut(s) 410, 547, 722, 821, 956, 1396, 1429, 1487
BfaI CTAG 4 cut(s) 344, 1053, 1266, 1308
BfuAI ACCTGC 1 cut(s) 1308
BfuI GTATCC 1 cut(s) 636
BisI GCNGC 2 cut(s) 109, 271
BlsI GCNGC 2 cut(s) 110, 272
Bme1390I CCNGG 3 cut(s) 7, 38, 1223
BmiI GGNNCC 4 cut(s) 411, 756, 894, 1614
BmrFI CCNGG 3 cut(s) 7, 38, 1223
BmrI ACTGGG 1 cut(s) 1171
BmsI GCATC 2 cut(s) 537, 1088
BmuI ACTGGG 1 cut(s) 1171
BplI GAGNNNNNCTC 4 cut(s) 1302, 1334, 1467, 1499
Bpu14I TTCGAA 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 440, 818
BsaAI YACGTR 1 cut(s) 1565
BsaHI GRCGYC 1 cut(s) 1632
BsaI GGTCTC 1 cut(s) 1396
BsaJI CCNNGG 2 cut(s) 103, 1222
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 1127, 1157
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 59, 1166, 1469
Bse21I CCTNAGG 1 cut(s) 1484
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 3 cut(s) 7, 38, 1223
BseDI CCNNGG 2 cut(s) 103, 1222
BseGI GGATG 5 cut(s) 46, 472, 780, 928, 1532
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 6 cut(s) 282, 588, 735, 1008, 1341, 1498
BseNI ACTGG 3 cut(s) 59, 1166, 1469
BsePI GCGCGC 1 cut(s) 821
BseRI GAGGAG 4 cut(s) 1135, 1148, 1414, 1625
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 2 cut(s) 94, 229
Bsh1236I CGCG 2 cut(s) 821, 823
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 8 cut(s) 410, 547, 722, 821, 956, 1396, 1429, 1487
BsmBI CGTCTC 1 cut(s) 821
BsmI GAATGC 4 cut(s) 373, 634, 1063, 1500
Bso31I GGTCTC 1 cut(s) 1396
Bsp119I TTCGAA 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 141, 330
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
BspACI CCGC 5 cut(s) 271, 299, 362, 371, 958
BspCNI CTCAG 6 cut(s) 283, 589, 736, 1009, 1342, 1497
BspEI TCCGGA 1 cut(s) 412
BspFNI CGCG 2 cut(s) 821, 823
BspLI GGNNCC 4 cut(s) 411, 756, 894, 1614
BspMI ACCTGC 1 cut(s) 1308
BspPI GGATC 5 cut(s) 404, 417, 445, 982, 1538
BspT104I TTCGAA 1 cut(s) 423
BspTNI GGTCTC 1 cut(s) 1396
BsrI ACTGG 3 cut(s) 59, 1166, 1469
BssECI CCNNGG 2 cut(s) 103, 1222
BssHII GCGCGC 1 cut(s) 821
BssMI GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
BssNI GRCGYC 1 cut(s) 1632
BssSI CACGAG 1 cut(s) 1607
Bst2BI CACGAG 1 cut(s) 1607
Bst2UI CCWGG 3 cut(s) 7, 38, 1223
Bst4CI ACNGT 2 cut(s) 1280, 1411
Bst6I CTCTTC 1 cut(s) 496
BstACI GRCGYC 1 cut(s) 1632
BstBAI YACGTR 1 cut(s) 1565
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 823, 958, 1305
BstENI CCTNNNNNAGG 1 cut(s) 41
BstF5I GGATG 5 cut(s) 46, 472, 780, 928, 1532
BstFNI CGCG 2 cut(s) 821, 823
BstHHI GCGC 2 cut(s) 823, 825
BstKTI GATC 8 cut(s) 187, 412, 453, 682, 717, 814, 990, 1533
BstMAI GTCTC 8 cut(s) 410, 547, 722, 821, 956, 1396, 1429, 1487
BstMBI GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
BstMWI GCNNNNNNNGC 5 cut(s) 66, 234, 243, 368, 1612
BstNI CCWGG 3 cut(s) 7, 38, 1223
BstNSI RCATGY 2 cut(s) 764, 902
BstSCI CCNGG 3 cut(s) 5, 36, 1221
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 2 cut(s) 821, 823
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 409, 450
BstYI RGATCY 2 cut(s) 409, 450
Bsu36I CCTNAGG 1 cut(s) 1484
BsuI GTATCC 1 cut(s) 636
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 5 cut(s) 46, 472, 780, 928, 1532
BtsIMutI CAGTG 2 cut(s) 207, 1285
BveI ACCTGC 1 cut(s) 1308
Cac8I GCNNGC 3 cut(s) 823, 958, 1305
CfoI GCGC 2 cut(s) 823, 825
CspCI CAANNNNNGTGG 2 cut(s) 58, 93
CviAII CATG 5 cut(s) 515, 683, 761, 899, 1445
DpnI GATC 8 cut(s) 186, 411, 452, 681, 716, 813, 989, 1532
DpnII GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
DraI TTTAAA 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 1396
Eco57I CTGAAG 1 cut(s) 1595
Eco81I CCTNAGG 1 cut(s) 1484
EcoNI CCTNNNNNAGG 1 cut(s) 41
EcoRII CCWGG 3 cut(s) 5, 36, 1221
EcoT38I GRGCYC 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 821
FaeI CATG 5 cut(s) 518, 686, 764, 902, 1448
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FatI CATG 5 cut(s) 514, 682, 760, 898, 1444
FauI CCCGC 1 cut(s) 965
FauNDI CATATG 1 cut(s) 624
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 2 cut(s) 120, 1110
Fnu4HI GCNGC 2 cut(s) 109, 271
FokI GGATG 5 cut(s) 53, 479, 787, 935, 1539
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 2 cut(s) 109, 271
FspBI CTAG 4 cut(s) 344, 1053, 1266, 1308
GlaI GCGC 2 cut(s) 822, 824
GluI GCNGC 2 cut(s) 109, 271
HapII CCGG 1 cut(s) 413
HhaI GCGC 2 cut(s) 823, 825
Hin1I GRCGYC 1 cut(s) 1632
Hin1II CATG 5 cut(s) 518, 686, 764, 902, 1448
Hin6I GCGC 2 cut(s) 821, 823
HinP1I GCGC 2 cut(s) 821, 823
HincII GTYRAC 1 cut(s) 1146
HindII GTYRAC 1 cut(s) 1146
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 4 cut(s) 432, 581, 740, 1387
HpaII CCGG 1 cut(s) 413
HphI GGTGA 5 cut(s) 179, 671, 997, 1289, 1408
Hpy166II GTNNAC 4 cut(s) 121, 139, 1111, 1146
Hpy188I TCNGA 8 cut(s) 292, 546, 574, 739, 745, 1018, 1336, 1510
Hpy188III TCNNGA 4 cut(s) 344, 413, 835, 1636
Hpy8I GTNNAC 4 cut(s) 121, 139, 1111, 1146
HpyAV CCTTC 2 cut(s) 248, 307
HpyCH4III ACNGT 2 cut(s) 1280, 1411
HpyCH4IV ACGT 2 cut(s) 1564, 1632
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 234, 243, 368, 1612
HpySE526I ACGT 2 cut(s) 1564, 1632
Hsp92I GRCGYC 1 cut(s) 1632
Hsp92II CATG 5 cut(s) 518, 686, 764, 902, 1448
HspAI GCGC 2 cut(s) 821, 823
Kpn2I TCCGGA 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
LmnI GCTCC 5 cut(s) 80, 754, 892, 1122, 1612
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 2 cut(s) 537, 1088
MaeI CTAG 4 cut(s) 344, 1053, 1266, 1308
MaeII ACGT 2 cut(s) 1564, 1632
MaeIII GTNAC 3 cut(s) 95, 260, 1646
MalI GATC 8 cut(s) 186, 411, 452, 681, 716, 813, 989, 1532
MboI GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 2 cut(s) 409, 450
MhlI GDGCHC 2 cut(s) 141, 330
MluCI AATT 8 cut(s) 148, 265, 525, 710, 980, 1228, 1287, 1366
MroI TCCGGA 1 cut(s) 412
MroXI GAANNNNTTC 2 cut(s) 1231, 1290
MseI TTAA 2 cut(s) 479, 1455
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 1 cut(s) 413
MspR9I CCNGG 3 cut(s) 7, 38, 1223
MunI CAATTG 1 cut(s) 265
Mva1269I GAATGC 4 cut(s) 373, 634, 1063, 1500
MvaI CCWGG 3 cut(s) 7, 38, 1223
MvnI CGCG 2 cut(s) 821, 823
MwoI GCNNNNNNNGC 5 cut(s) 66, 234, 243, 368, 1612
NdeI CATATG 1 cut(s) 624
NdeII GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
NlaIII CATG 5 cut(s) 518, 686, 764, 902, 1448
NlaIV GGNNCC 4 cut(s) 411, 756, 894, 1614
NmuCI GTSAC 3 cut(s) 95, 260, 1646
NspI RCATGY 2 cut(s) 764, 902
NspV TTCGAA 1 cut(s) 423
PaqCI CACCTGC 1 cut(s) 1308
PauI GCGCGC 1 cut(s) 821
PciI ACATGT 2 cut(s) 760, 898
PctI GAATGC 4 cut(s) 373, 634, 1063, 1500
PdmI GAANNNNTTC 2 cut(s) 1231, 1290
PfeI GAWTC 4 cut(s) 432, 581, 740, 1387
PkrI GCNGC 2 cut(s) 110, 272
Ppu21I YACGTR 1 cut(s) 1565
PscI ACATGT 2 cut(s) 760, 898
Psp6I CCWGG 3 cut(s) 5, 36, 1221
PspGI CCWGG 3 cut(s) 5, 36, 1221
PspN4I GGNNCC 4 cut(s) 411, 756, 894, 1614
PsuI RGATCY 2 cut(s) 409, 450
PteI GCGCGC 1 cut(s) 821
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 2 cut(s) 479, 1455
SatI GCNGC 2 cut(s) 109, 271
Sau3AI GATC 8 cut(s) 184, 409, 450, 679, 714, 811, 987, 1530
ScrFI CCNGG 3 cut(s) 7, 38, 1223
SduI GDGCHC 2 cut(s) 141, 330
SfaNI GCATC 2 cut(s) 537, 1088
SfuI TTCGAA 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 3 cut(s) 455, 833, 1636
SmoI CTYRAG 3 cut(s) 455, 833, 1636
Sse9I AATT 8 cut(s) 148, 265, 525, 710, 980, 1228, 1287, 1366
SsiI CCGC 5 cut(s) 271, 299, 362, 371, 958
SspI AATATT 1 cut(s) 799
SspMI CTAG 4 cut(s) 344, 1053, 1266, 1308
StyD4I CCNGG 3 cut(s) 5, 36, 1221
TaaI ACNGT 2 cut(s) 1280, 1411
TaiI ACGT 2 cut(s) 1567, 1635
TaqI TCGA 2 cut(s) 219, 423
TasI AATT 8 cut(s) 148, 265, 525, 710, 980, 1228, 1287, 1366
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 4 cut(s) 432, 581, 740, 1387
Tru1I TTAA 2 cut(s) 479, 1455
Tru9I TTAA 2 cut(s) 479, 1455
TscAI CASTG 2 cut(s) 207, 1285
TseFI GTSAC 3 cut(s) 95, 260, 1646
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 3 cut(s) 95, 260, 1646
TspDTI ATGAA 8 cut(s) 38, 519, 641, 678, 804, 942, 1115, 1224
TspGWI ACGGA 1 cut(s) 1132
TspRI CASTG 2 cut(s) 207, 1285
VneI GTGCAC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 41
XapI RAATTY 4 cut(s) 525, 1228, 1287, 1366
XbaI TCTAGA 1 cut(s) 343
XceI RCATGY 2 cut(s) 764, 902
XmiI GTMKAC 2 cut(s) 120, 1110
XmnI GAANNNNTTC 2 cut(s) 1231, 1290
XspI CTAG 4 cut(s) 344, 1053, 1266, 1308
ZraI GACGTC 1 cut(s) 1633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.