zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05690 FvH4_4g12500 |
| rosa_chinensis | RchiOBHm_Chr2g0091341 |
| rosa_laevigata | RLG00000016213 |
| rosa_rugosa | Rorug02G0016500 |
| rosa_samantha | Rh2AG061400 Rh2BG060800 Rh2CG062800 Rh2DG061400 |
| rosa_wichuraiana | Rw2G004830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1335 |
| AciI | CCGC | 5 cut(s) | 262, 290, 353, 365, 544 |
| AclWI | GGATC | 7 cut(s) | 215, 411, 439, 923, 936, 1347, 1427 |
| AcsI | RAATTY | 4 cut(s) | 687, 1117, 1176, 1367 |
| AcvI | CACGTG | 1 cut(s) | 834 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 325 |
| AflII | CTTAAG | 1 cut(s) | 449 |
| AgsI | TTSAA | 4 cut(s) | 430, 529, 685, 1313 |
| AjnI | CCWGG | 2 cut(s) | 93, 1281 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1091, 1123 |
| AleI | CACNNNNGTG | 1 cut(s) | 1167 |
| AluBI | AGCT | 7 cut(s) | 28, 340, 994, 1014, 1074, 1330, 1450 |
| AluI | AGCT | 7 cut(s) | 28, 340, 994, 1014, 1074, 1330, 1450 |
| Alw26I | GTCTC | 5 cut(s) | 404, 734, 1257, 1285, 1394 |
| AlwI | GGATC | 7 cut(s) | 215, 411, 439, 923, 936, 1347, 1427 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 737 |
| Ama87I | CYCGRG | 1 cut(s) | 1397 |
| AoxI | GGCC | 1 cut(s) | 316 |
| ApeKI | GCWGC | 3 cut(s) | 99, 1039, 1330 |
| ApoI | RAATTY | 4 cut(s) | 687, 1117, 1176, 1367 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 35, 67, 269, 301, 887, 919 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1176 |
| AspA2I | CCTAGG | 1 cut(s) | 629 |
| AspLEI | GCGC | 1 cut(s) | 1335 |
| AsuC2I | CCSGG | 2 cut(s) | 205, 1112 |
| AsuHPI | GGTGA | 6 cut(s) | 107, 170, 307, 874, 1118, 1181 |
| AsuII | TTCGAA | 1 cut(s) | 417 |
| AvaI | CYCGRG | 1 cut(s) | 1397 |
| AvrII | CCTAGG | 1 cut(s) | 629 |
| BamHI | GGATCC | 1 cut(s) | 928 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 124, 156 |
| BbrPI | CACGTG | 1 cut(s) | 834 |
| BbvI | GCAGC | 3 cut(s) | 86, 1051, 1317 |
| BccI | CCATC | 6 cut(s) | 59, 159, 368, 374, 919, 1410 |
| BciT130I | CCWGG | 2 cut(s) | 95, 1283 |
| BclI | TGATCA | 1 cut(s) | 175 |
| BcnI | CCSGG | 2 cut(s) | 205, 1112 |
| BcoDI | GTCTC | 5 cut(s) | 404, 734, 1257, 1285, 1394 |
| BfaI | CTAG | 4 cut(s) | 630, 942, 981, 1155 |
| BfmI | CTRYAG | 1 cut(s) | 972 |
| BfrI | CTTAAG | 1 cut(s) | 449 |
| BisI | GCNGC | 4 cut(s) | 100, 262, 1040, 1331 |
| BlnI | CCTAGG | 1 cut(s) | 629 |
| BlsI | GCNGC | 4 cut(s) | 101, 263, 1041, 1332 |
| Bme1390I | CCNGG | 4 cut(s) | 95, 205, 1112, 1283 |
| BmeT110I | CYCGRG | 1 cut(s) | 1397 |
| BmiI | GGNNCC | 4 cut(s) | 73, 768, 930, 1503 |
| BmrFI | CCNGG | 4 cut(s) | 95, 205, 1112, 1283 |
| BmsI | GCATC | 2 cut(s) | 587, 1449 |
| Bpu14I | TTCGAA | 1 cut(s) | 417 |
| BpuEI | CTTGAG | 2 cut(s) | 97, 487 |
| BpuMI | CCSGG | 2 cut(s) | 205, 1112 |
| BsaAI | YACGTR | 1 cut(s) | 834 |
| BsaBI | GATNNNNATC | 1 cut(s) | 212 |
| BsaI | GGTCTC | 1 cut(s) | 1285 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 629, 1111, 1239 |
| BsaWI | WCCGGW | 2 cut(s) | 422, 1374 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1016, 1046 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 325 |
| Bse1I | ACTGG | 2 cut(s) | 50, 864 |
| Bse3DI | GCAATG | 1 cut(s) | 1512 |
| Bse8I | GATNNNNATC | 1 cut(s) | 212 |
| BseBI | CCWGG | 2 cut(s) | 95, 1283 |
| BseDI | CCNNGG | 4 cut(s) | 94, 629, 1111, 1239 |
| BseGI | GGATG | 8 cut(s) | 37, 481, 657, 667, 673, 802, 1371, 1421 |
| BseJI | GATNNNNATC | 1 cut(s) | 212 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BseMI | GCAATG | 1 cut(s) | 1512 |
| BseMII | CTCAG | 5 cut(s) | 273, 582, 729, 744, 747 |
| BseNI | ACTGG | 2 cut(s) | 50, 864 |
| BseRI | GAGGAG | 2 cut(s) | 371, 1037 |
| BseXI | GCAGC | 3 cut(s) | 86, 1051, 1317 |
| BsgI | GTGCAG | 2 cut(s) | 85, 856 |
| Bsh1236I | CGCG | 1 cut(s) | 1335 |
| BshFI | GGCC | 1 cut(s) | 318 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1397 |
| BsiSI | CCGG | 4 cut(s) | 204, 423, 1111, 1375 |
| BslFI | GGGAC | 1 cut(s) | 1380 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BsmAI | GTCTC | 5 cut(s) | 404, 734, 1257, 1285, 1394 |
| BsmFI | GGGAC | 1 cut(s) | 1380 |
| BsmI | GAATGC | 2 cut(s) | 367, 1389 |
| BsnI | GGCC | 1 cut(s) | 318 |
| Bso31I | GGTCTC | 1 cut(s) | 1285 |
| BsoBI | CYCGRG | 1 cut(s) | 1397 |
| Bsp119I | TTCGAA | 1 cut(s) | 417 |
| BspACI | CCGC | 5 cut(s) | 262, 290, 353, 365, 544 |
| BspANI | GGCC | 1 cut(s) | 318 |
| BspCNI | CTCAG | 5 cut(s) | 274, 583, 730, 743, 748 |
| BspFNI | CGCG | 1 cut(s) | 1335 |
| BspLI | GGNNCC | 4 cut(s) | 73, 768, 930, 1503 |
| BspPI | GGATC | 7 cut(s) | 215, 411, 439, 923, 936, 1347, 1427 |
| BspT104I | TTCGAA | 1 cut(s) | 417 |
| BspTI | CTTAAG | 1 cut(s) | 449 |
| BspTNI | GGTCTC | 1 cut(s) | 1285 |
| BsrDI | GCAATG | 1 cut(s) | 1512 |
| BsrI | ACTGG | 2 cut(s) | 50, 864 |
| BssECI | CCNNGG | 4 cut(s) | 94, 629, 1111, 1239 |
| BssT1I | CCWWGG | 1 cut(s) | 629 |
| Bst2UI | CCWGG | 2 cut(s) | 95, 1283 |
| Bst4CI | ACNGT | 3 cut(s) | 1106, 1169, 1300 |
| Bst6I | CTCTTC | 3 cut(s) | 490, 507, 874 |
| BstAFI | CTTAAG | 1 cut(s) | 449 |
| BstBAI | YACGTR | 1 cut(s) | 834 |
| BstBI | TTCGAA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 1 cut(s) | 351 |
| BstDEI | CTNAG | 7 cut(s) | 282, 591, 603, 730, 738, 756, 1451 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 323 |
| BstF5I | GGATG | 8 cut(s) | 37, 481, 657, 667, 673, 802, 1371, 1421 |
| BstFNI | CGCG | 1 cut(s) | 1335 |
| BstHHI | GCGC | 1 cut(s) | 1335 |
| BstMAI | GTCTC | 5 cut(s) | 404, 734, 1257, 1285, 1394 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 57, 225, 234, 270, 346, 1501 |
| BstNI | CCWGG | 2 cut(s) | 95, 1283 |
| BstSCI | CCNGG | 4 cut(s) | 93, 203, 1110, 1281 |
| BstSFI | CTRYAG | 1 cut(s) | 972 |
| BstUI | CGCG | 1 cut(s) | 1335 |
| BstV1I | GCAGC | 3 cut(s) | 86, 1051, 1317 |
| BstX2I | RGATCY | 3 cut(s) | 444, 928, 1339 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 127, 1444 |
| BstYI | RGATCY | 3 cut(s) | 444, 928, 1339 |
| BsuRI | GGCC | 1 cut(s) | 318 |
| BtgZI | GCGATG | 1 cut(s) | 288 |
| BtsCI | GGATG | 8 cut(s) | 37, 481, 657, 667, 673, 802, 1371, 1421 |
| BtsIMutI | CAGTG | 2 cut(s) | 198, 815 |
| Cac8I | GCNNGC | 1 cut(s) | 351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 737 |
| CfoI | GCGC | 1 cut(s) | 1335 |
| CseI | GACGC | 1 cut(s) | 957 |
| CsiI | ACCWGGT | 1 cut(s) | 1281 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 49, 84 |
| CviAII | CATG | 1 cut(s) | 572 |
| DdeI | CTNAG | 7 cut(s) | 282, 591, 603, 730, 738, 756, 1451 |
| Eam1104I | CTCTTC | 3 cut(s) | 490, 507, 874 |
| EarI | CTCTTC | 3 cut(s) | 490, 507, 874 |
| Eco130I | CCWWGG | 1 cut(s) | 629 |
| Eco147I | AGGCCT | 1 cut(s) | 318 |
| Eco31I | GGTCTC | 1 cut(s) | 1285 |
| Eco72I | CACGTG | 1 cut(s) | 834 |
| Eco88I | CYCGRG | 1 cut(s) | 1397 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 323 |
| EcoRI | GAATTC | 1 cut(s) | 1367 |
| EcoRII | CCWGG | 2 cut(s) | 93, 1281 |
| EcoT14I | CCWWGG | 1 cut(s) | 629 |
| ErhI | CCWWGG | 1 cut(s) | 629 |
| FaeI | CATG | 1 cut(s) | 575 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 380, 412, 449, 481 |
| FaqI | GGGAC | 1 cut(s) | 1380 |
| FatI | CATG | 1 cut(s) | 571 |
| FbaI | TGATCA | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 4 cut(s) | 100, 262, 1040, 1331 |
| FokI | GGATG | 8 cut(s) | 44, 488, 664, 674, 680, 809, 1358, 1428 |
| Fsp4HI | GCNGC | 4 cut(s) | 100, 262, 1040, 1331 |
| FspBI | CTAG | 4 cut(s) | 630, 942, 981, 1155 |
| GlaI | GCGC | 1 cut(s) | 1334 |
| GluI | GCNGC | 4 cut(s) | 100, 262, 1040, 1331 |
| HaeIII | GGCC | 1 cut(s) | 318 |
| HapII | CCGG | 4 cut(s) | 204, 423, 1111, 1375 |
| HgaI | GACGC | 1 cut(s) | 957 |
| HhaI | GCGC | 1 cut(s) | 1335 |
| Hin1II | CATG | 1 cut(s) | 575 |
| Hin6I | GCGC | 1 cut(s) | 1333 |
| HinP1I | GCGC | 1 cut(s) | 1333 |
| HindIII | AAGCTT | 1 cut(s) | 992 |
| HinfI | GANTC | 5 cut(s) | 278, 426, 587, 734, 1488 |
| HpaII | CCGG | 4 cut(s) | 204, 423, 1111, 1375 |
| HphI | GGTGA | 6 cut(s) | 107, 170, 307, 874, 1118, 1181 |
| Hpy188III | TCNNGA | 2 cut(s) | 407, 1397 |
| Hpy99I | CGWCG | 1 cut(s) | 1169 |
| HpyAV | CCTTC | 3 cut(s) | 126, 239, 1002 |
| HpyCH4III | ACNGT | 3 cut(s) | 1106, 1169, 1300 |
| HpyCH4IV | ACGT | 1 cut(s) | 833 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 57, 225, 234, 270, 346, 1501 |
| HpyF3I | CTNAG | 7 cut(s) | 282, 591, 603, 730, 738, 756, 1451 |
| HpySE526I | ACGT | 1 cut(s) | 833 |
| Hsp92II | CATG | 1 cut(s) | 575 |
| HspAI | GCGC | 1 cut(s) | 1333 |
| Ksp22I | TGATCA | 1 cut(s) | 175 |
| LmnI | GCTCC | 6 cut(s) | 71, 206, 766, 1011, 1447, 1501 |
| Lsp1109I | GCAGC | 3 cut(s) | 86, 1051, 1317 |
| LweI | GCATC | 2 cut(s) | 587, 1449 |
| MabI | ACCWGGT | 1 cut(s) | 1281 |
| MaeI | CTAG | 4 cut(s) | 630, 942, 981, 1155 |
| MaeII | ACGT | 1 cut(s) | 833 |
| MaeIII | GTNAC | 3 cut(s) | 86, 877, 1124 |
| MflI | RGATCY | 3 cut(s) | 444, 928, 1339 |
| MlyI | GAGTC | 2 cut(s) | 272, 1482 |
| MmeI | TCCRAC | 1 cut(s) | 372 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1176 |
| MseI | TTAA | 3 cut(s) | 450, 888, 1379 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1167 |
| MspCI | CTTAAG | 1 cut(s) | 449 |
| MspI | CCGG | 4 cut(s) | 204, 423, 1111, 1375 |
| MspR9I | CCNGG | 4 cut(s) | 95, 205, 1112, 1283 |
| Mva1269I | GAATGC | 2 cut(s) | 367, 1389 |
| MvaI | CCWGG | 2 cut(s) | 95, 1283 |
| MvnI | CGCG | 1 cut(s) | 1335 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 57, 225, 234, 270, 346, 1501 |
| NciI | CCSGG | 2 cut(s) | 205, 1112 |
| NlaIII | CATG | 1 cut(s) | 575 |
| NlaIV | GGNNCC | 4 cut(s) | 73, 768, 930, 1503 |
| NmuCI | GTSAC | 2 cut(s) | 86, 1124 |
| NspV | TTCGAA | 1 cut(s) | 417 |
| OliI | CACNNNNGTG | 1 cut(s) | 1167 |
| PceI | AGGCCT | 1 cut(s) | 318 |
| PctI | GAATGC | 2 cut(s) | 367, 1389 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1176 |
| PfeI | GAWTC | 3 cut(s) | 426, 587, 734 |
| PfoI | TCCNGGA | 1 cut(s) | 203 |
| PkrI | GCNGC | 4 cut(s) | 101, 263, 1041, 1332 |
| PleI | GAGTC | 2 cut(s) | 272, 1482 |
| PmaCI | CACGTG | 1 cut(s) | 834 |
| PmlI | CACGTG | 1 cut(s) | 834 |
| PpsI | GAGTC | 2 cut(s) | 272, 1482 |
| Ppu21I | YACGTR | 1 cut(s) | 834 |
| Psp6I | CCWGG | 2 cut(s) | 93, 1281 |
| PspCI | CACGTG | 1 cut(s) | 834 |
| PspGI | CCWGG | 2 cut(s) | 93, 1281 |
| PspN4I | GGNNCC | 4 cut(s) | 73, 768, 930, 1503 |
| PstNI | CAGNNNCTG | 1 cut(s) | 737 |
| PsuI | RGATCY | 3 cut(s) | 444, 928, 1339 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1167 |
| SaqAI | TTAA | 3 cut(s) | 450, 888, 1379 |
| SatI | GCNGC | 4 cut(s) | 100, 262, 1040, 1331 |
| SchI | GAGTC | 2 cut(s) | 272, 1482 |
| ScrFI | CCNGG | 4 cut(s) | 95, 205, 1112, 1283 |
| SexAI | ACCWGGT | 1 cut(s) | 1281 |
| SfaNI | GCATC | 2 cut(s) | 587, 1449 |
| SfcI | CTRYAG | 1 cut(s) | 972 |
| SfuI | TTCGAA | 1 cut(s) | 417 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1167 |
| SmlI | CTYRAG | 3 cut(s) | 76, 449, 466 |
| SmoI | CTYRAG | 3 cut(s) | 76, 449, 466 |
| SseBI | AGGCCT | 1 cut(s) | 318 |
| SsiI | CCGC | 5 cut(s) | 262, 290, 353, 365, 544 |
| SspMI | CTAG | 4 cut(s) | 630, 942, 981, 1155 |
| StuI | AGGCCT | 1 cut(s) | 318 |
| StyD4I | CCNGG | 4 cut(s) | 93, 203, 1110, 1281 |
| StyI | CCWWGG | 1 cut(s) | 629 |
| TaaI | ACNGT | 3 cut(s) | 1106, 1169, 1300 |
| TaiI | ACGT | 1 cut(s) | 836 |
| TaqI | TCGA | 1 cut(s) | 417 |
| TauI | GCSGC | 1 cut(s) | 264 |
| TfiI | GAWTC | 3 cut(s) | 426, 587, 734 |
| Tru1I | TTAA | 3 cut(s) | 450, 888, 1379 |
| Tru9I | TTAA | 3 cut(s) | 450, 888, 1379 |
| TscAI | CASTG | 2 cut(s) | 198, 822 |
| TseFI | GTSAC | 2 cut(s) | 86, 1124 |
| TseI | GCWGC | 3 cut(s) | 99, 1039, 1330 |
| Tsp45I | GTSAC | 2 cut(s) | 86, 1124 |
| TspRI | CASTG | 2 cut(s) | 198, 822 |
| Vha464I | CTTAAG | 1 cut(s) | 449 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 323 |
| XapI | RAATTY | 4 cut(s) | 687, 1117, 1176, 1367 |
| XmaJI | CCTAGG | 1 cut(s) | 629 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1176 |
| XspI | CTAG | 4 cut(s) | 630, 942, 981, 1155 |