zinc finger CCCH domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g05690 FvH4_4g12500 |
| rosa_chinensis | RchiOBHm_Chr2g0091341 |
| rosa_laevigata | RLG00000016213 |
| rosa_rugosa | Rorug02G0016500 |
| rosa_samantha | Rh2AG061400 Rh2BG060800 Rh2CG062800 Rh2DG061400 |
| rosa_wichuraiana | Rw2G004830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 779, 1281 |
| AciI | CCGC | 6 cut(s) | 208, 236, 299, 311, 490, 777 |
| AclWI | GGATC | 6 cut(s) | 357, 385, 869, 882, 1293, 1373 |
| AcsI | RAATTY | 4 cut(s) | 633, 1063, 1122, 1313 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 271 |
| AflII | CTTAAG | 1 cut(s) | 395 |
| AgsI | TTSAA | 4 cut(s) | 376, 475, 631, 1259 |
| AjnI | CCWGG | 2 cut(s) | 93, 1227 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1037, 1069 |
| AleI | CACNNNNGTG | 1 cut(s) | 1113 |
| AluBI | AGCT | 7 cut(s) | 28, 286, 940, 960, 1020, 1276, 1396 |
| AluI | AGCT | 7 cut(s) | 28, 286, 940, 960, 1020, 1276, 1396 |
| Alw26I | GTCTC | 5 cut(s) | 350, 680, 1203, 1231, 1340 |
| AlwI | GGATC | 6 cut(s) | 357, 385, 869, 882, 1293, 1373 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 683 |
| Ama87I | CYCGRG | 1 cut(s) | 1343 |
| AoxI | GGCC | 1 cut(s) | 262 |
| ApeKI | GCWGC | 3 cut(s) | 99, 985, 1276 |
| ApoI | RAATTY | 4 cut(s) | 633, 1063, 1122, 1313 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 35, 67, 215, 247, 833, 865 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1122 |
| AspA2I | CCTAGG | 1 cut(s) | 575 |
| AspLEI | GCGC | 1 cut(s) | 1281 |
| AsuC2I | CCSGG | 1 cut(s) | 1058 |
| AsuHPI | GGTGA | 6 cut(s) | 107, 170, 253, 820, 1064, 1127 |
| AsuII | TTCGAA | 1 cut(s) | 363 |
| AvaI | CYCGRG | 1 cut(s) | 1343 |
| AvrII | CCTAGG | 1 cut(s) | 575 |
| BamHI | GGATCC | 1 cut(s) | 874 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 124, 156 |
| BbvI | GCAGC | 3 cut(s) | 86, 997, 1263 |
| BccI | CCATC | 6 cut(s) | 59, 159, 314, 320, 865, 1356 |
| BciT130I | CCWGG | 2 cut(s) | 95, 1229 |
| BclI | TGATCA | 1 cut(s) | 175 |
| BcnI | CCSGG | 1 cut(s) | 1058 |
| BcoDI | GTCTC | 5 cut(s) | 350, 680, 1203, 1231, 1340 |
| BfaI | CTAG | 4 cut(s) | 576, 888, 927, 1101 |
| BfmI | CTRYAG | 1 cut(s) | 918 |
| BfrI | CTTAAG | 1 cut(s) | 395 |
| BisI | GCNGC | 5 cut(s) | 100, 208, 777, 986, 1277 |
| BlnI | CCTAGG | 1 cut(s) | 575 |
| BlsI | GCNGC | 5 cut(s) | 101, 209, 778, 987, 1278 |
| Bme1390I | CCNGG | 3 cut(s) | 95, 1058, 1229 |
| BmeT110I | CYCGRG | 1 cut(s) | 1343 |
| BmiI | GGNNCC | 4 cut(s) | 73, 714, 876, 1449 |
| BmrFI | CCNGG | 3 cut(s) | 95, 1058, 1229 |
| BmsI | GCATC | 2 cut(s) | 533, 1395 |
| Bpu14I | TTCGAA | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 3 cut(s) | 97, 433, 1498 |
| BpuMI | CCSGG | 1 cut(s) | 1058 |
| BsaBI | GATNNNNATC | 1 cut(s) | 879 |
| BsaI | GGTCTC | 1 cut(s) | 1231 |
| BsaJI | CCNNGG | 4 cut(s) | 94, 575, 1057, 1185 |
| BsaWI | WCCGGW | 2 cut(s) | 368, 1320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 962, 992 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 271 |
| Bse1I | ACTGG | 2 cut(s) | 50, 810 |
| Bse3DI | GCAATG | 1 cut(s) | 1458 |
| Bse8I | GATNNNNATC | 1 cut(s) | 879 |
| BseBI | CCWGG | 2 cut(s) | 95, 1229 |
| BseDI | CCNNGG | 4 cut(s) | 94, 575, 1057, 1185 |
| BseGI | GGATG | 9 cut(s) | 37, 427, 603, 613, 619, 748, 1317, 1367, 1379 |
| BseJI | GATNNNNATC | 1 cut(s) | 879 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BseMI | GCAATG | 1 cut(s) | 1458 |
| BseMII | CTCAG | 5 cut(s) | 219, 528, 675, 690, 693 |
| BseNI | ACTGG | 2 cut(s) | 50, 810 |
| BseRI | GAGGAG | 2 cut(s) | 317, 983 |
| BseXI | GCAGC | 3 cut(s) | 86, 997, 1263 |
| BsgI | GTGCAG | 2 cut(s) | 85, 802 |
| Bsh1236I | CGCG | 2 cut(s) | 779, 1281 |
| BshFI | GGCC | 1 cut(s) | 264 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1343 |
| BsiSI | CCGG | 3 cut(s) | 369, 1057, 1321 |
| BslFI | GGGAC | 1 cut(s) | 1326 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 271 |
| BsmAI | GTCTC | 5 cut(s) | 350, 680, 1203, 1231, 1340 |
| BsmFI | GGGAC | 1 cut(s) | 1326 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| BsnI | GGCC | 1 cut(s) | 264 |
| Bso31I | GGTCTC | 1 cut(s) | 1231 |
| BsoBI | CYCGRG | 1 cut(s) | 1343 |
| Bsp119I | TTCGAA | 1 cut(s) | 363 |
| BspACI | CCGC | 6 cut(s) | 208, 236, 299, 311, 490, 777 |
| BspANI | GGCC | 1 cut(s) | 264 |
| BspCNI | CTCAG | 5 cut(s) | 220, 529, 676, 689, 694 |
| BspFNI | CGCG | 2 cut(s) | 779, 1281 |
| BspLI | GGNNCC | 4 cut(s) | 73, 714, 876, 1449 |
| BspPI | GGATC | 6 cut(s) | 357, 385, 869, 882, 1293, 1373 |
| BspT104I | TTCGAA | 1 cut(s) | 363 |
| BspTI | CTTAAG | 1 cut(s) | 395 |
| BspTNI | GGTCTC | 1 cut(s) | 1231 |
| BsrDI | GCAATG | 1 cut(s) | 1458 |
| BsrI | ACTGG | 2 cut(s) | 50, 810 |
| BssECI | CCNNGG | 4 cut(s) | 94, 575, 1057, 1185 |
| BssT1I | CCWWGG | 1 cut(s) | 575 |
| Bst2UI | CCWGG | 2 cut(s) | 95, 1229 |
| Bst4CI | ACNGT | 2 cut(s) | 1115, 1246 |
| Bst6I | CTCTTC | 3 cut(s) | 436, 453, 820 |
| BstAFI | CTTAAG | 1 cut(s) | 395 |
| BstBI | TTCGAA | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 2 cut(s) | 297, 781 |
| BstDEI | CTNAG | 6 cut(s) | 228, 537, 549, 676, 684, 702 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 269 |
| BstF5I | GGATG | 9 cut(s) | 37, 427, 603, 613, 619, 748, 1317, 1367, 1379 |
| BstFNI | CGCG | 2 cut(s) | 779, 1281 |
| BstHHI | GCGC | 1 cut(s) | 1281 |
| BstMAI | GTCTC | 5 cut(s) | 350, 680, 1203, 1231, 1340 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 57, 216, 292, 1447 |
| BstNI | CCWGG | 2 cut(s) | 95, 1229 |
| BstSCI | CCNGG | 3 cut(s) | 93, 1056, 1227 |
| BstSFI | CTRYAG | 1 cut(s) | 918 |
| BstUI | CGCG | 2 cut(s) | 779, 1281 |
| BstV1I | GCAGC | 3 cut(s) | 86, 997, 1263 |
| BstX2I | RGATCY | 3 cut(s) | 390, 874, 1285 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 127 |
| BstYI | RGATCY | 3 cut(s) | 390, 874, 1285 |
| BsuRI | GGCC | 1 cut(s) | 264 |
| BtgZI | GCGATG | 1 cut(s) | 234 |
| BtsCI | GGATG | 9 cut(s) | 37, 427, 603, 613, 619, 748, 1317, 1367, 1379 |
| BtsIMutI | CAGTG | 1 cut(s) | 761 |
| Cac8I | GCNNGC | 2 cut(s) | 297, 781 |
| CaiI | CAGNNNCTG | 1 cut(s) | 683 |
| CfoI | GCGC | 1 cut(s) | 1281 |
| CseI | GACGC | 1 cut(s) | 903 |
| CsiI | ACCWGGT | 1 cut(s) | 1227 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 49, 84 |
| CviAII | CATG | 1 cut(s) | 518 |
| DdeI | CTNAG | 6 cut(s) | 228, 537, 549, 676, 684, 702 |
| Eam1104I | CTCTTC | 3 cut(s) | 436, 453, 820 |
| EarI | CTCTTC | 3 cut(s) | 436, 453, 820 |
| Eco130I | CCWWGG | 1 cut(s) | 575 |
| Eco147I | AGGCCT | 1 cut(s) | 264 |
| Eco31I | GGTCTC | 1 cut(s) | 1231 |
| Eco88I | CYCGRG | 1 cut(s) | 1343 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 269 |
| EcoRI | GAATTC | 1 cut(s) | 1313 |
| EcoRII | CCWGG | 2 cut(s) | 93, 1227 |
| EcoT14I | CCWWGG | 1 cut(s) | 575 |
| ErhI | CCWWGG | 1 cut(s) | 575 |
| FaeI | CATG | 1 cut(s) | 521 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 326, 358, 395, 427 |
| FaqI | GGGAC | 1 cut(s) | 1326 |
| FatI | CATG | 1 cut(s) | 517 |
| FbaI | TGATCA | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 5 cut(s) | 100, 208, 777, 986, 1277 |
| FokI | GGATG | 9 cut(s) | 44, 434, 610, 620, 626, 755, 1304, 1366, 1374 |
| Fsp4HI | GCNGC | 5 cut(s) | 100, 208, 777, 986, 1277 |
| FspBI | CTAG | 4 cut(s) | 576, 888, 927, 1101 |
| GlaI | GCGC | 1 cut(s) | 1280 |
| GluI | GCNGC | 5 cut(s) | 100, 208, 777, 986, 1277 |
| HaeIII | GGCC | 1 cut(s) | 264 |
| HapII | CCGG | 3 cut(s) | 369, 1057, 1321 |
| HgaI | GACGC | 1 cut(s) | 903 |
| HhaI | GCGC | 1 cut(s) | 1281 |
| Hin1II | CATG | 1 cut(s) | 521 |
| Hin6I | GCGC | 1 cut(s) | 1279 |
| HinP1I | GCGC | 1 cut(s) | 1279 |
| HindIII | AAGCTT | 1 cut(s) | 938 |
| HinfI | GANTC | 7 cut(s) | 224, 372, 533, 680, 698, 1172, 1434 |
| HpaII | CCGG | 3 cut(s) | 369, 1057, 1321 |
| HphI | GGTGA | 6 cut(s) | 107, 170, 253, 820, 1064, 1127 |
| Hpy188III | TCNNGA | 3 cut(s) | 353, 1343, 1369 |
| Hpy99I | CGWCG | 1 cut(s) | 1115 |
| HpyAV | CCTTC | 2 cut(s) | 126, 948 |
| HpyCH4III | ACNGT | 2 cut(s) | 1115, 1246 |
| HpyCH4V | TGCA | 7 cut(s) | 60, 102, 646, 783, 1335, 1441, 1463 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 57, 216, 292, 1447 |
| HpyF3I | CTNAG | 6 cut(s) | 228, 537, 549, 676, 684, 702 |
| Hsp92II | CATG | 1 cut(s) | 521 |
| HspAI | GCGC | 1 cut(s) | 1279 |
| Ksp22I | TGATCA | 1 cut(s) | 175 |
| LmnI | GCTCC | 5 cut(s) | 71, 712, 957, 1393, 1447 |
| Lsp1109I | GCAGC | 3 cut(s) | 86, 997, 1263 |
| LweI | GCATC | 2 cut(s) | 533, 1395 |
| MabI | ACCWGGT | 1 cut(s) | 1227 |
| MaeI | CTAG | 4 cut(s) | 576, 888, 927, 1101 |
| MaeIII | GTNAC | 3 cut(s) | 86, 823, 1070 |
| MflI | RGATCY | 3 cut(s) | 390, 874, 1285 |
| MlyI | GAGTC | 2 cut(s) | 218, 1428 |
| MmeI | TCCRAC | 1 cut(s) | 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1122 |
| MseI | TTAA | 5 cut(s) | 396, 834, 1325, 1398, 1498 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1113 |
| MspCI | CTTAAG | 1 cut(s) | 395 |
| MspI | CCGG | 3 cut(s) | 369, 1057, 1321 |
| MspR9I | CCNGG | 3 cut(s) | 95, 1058, 1229 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MvaI | CCWGG | 2 cut(s) | 95, 1229 |
| MvnI | CGCG | 2 cut(s) | 779, 1281 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 57, 216, 292, 1447 |
| NciI | CCSGG | 1 cut(s) | 1058 |
| NlaIII | CATG | 1 cut(s) | 521 |
| NlaIV | GGNNCC | 4 cut(s) | 73, 714, 876, 1449 |
| NmuCI | GTSAC | 2 cut(s) | 86, 1070 |
| NspV | TTCGAA | 1 cut(s) | 363 |
| OliI | CACNNNNGTG | 1 cut(s) | 1113 |
| PceI | AGGCCT | 1 cut(s) | 264 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1122 |
| PfeI | GAWTC | 5 cut(s) | 372, 533, 680, 698, 1172 |
| PflFI | GACNNNGTC | 1 cut(s) | 1375 |
| PkrI | GCNGC | 5 cut(s) | 101, 209, 778, 987, 1278 |
| PleI | GAGTC | 2 cut(s) | 218, 1428 |
| PpsI | GAGTC | 2 cut(s) | 218, 1428 |
| Psp6I | CCWGG | 2 cut(s) | 93, 1227 |
| PspGI | CCWGG | 2 cut(s) | 93, 1227 |
| PspN4I | GGNNCC | 4 cut(s) | 73, 714, 876, 1449 |
| PstNI | CAGNNNCTG | 1 cut(s) | 683 |
| PsuI | RGATCY | 3 cut(s) | 390, 874, 1285 |
| PsyI | GACNNNGTC | 1 cut(s) | 1375 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1113 |
| SaqAI | TTAA | 5 cut(s) | 396, 834, 1325, 1398, 1498 |
| SatI | GCNGC | 5 cut(s) | 100, 208, 777, 986, 1277 |
| SchI | GAGTC | 2 cut(s) | 218, 1428 |
| ScrFI | CCNGG | 3 cut(s) | 95, 1058, 1229 |
| SexAI | ACCWGGT | 1 cut(s) | 1227 |
| SfaNI | GCATC | 2 cut(s) | 533, 1395 |
| SfcI | CTRYAG | 1 cut(s) | 918 |
| SfuI | TTCGAA | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1113 |
| SmlI | CTYRAG | 4 cut(s) | 76, 395, 412, 1477 |
| SmoI | CTYRAG | 4 cut(s) | 76, 395, 412, 1477 |
| SseBI | AGGCCT | 1 cut(s) | 264 |
| SsiI | CCGC | 6 cut(s) | 208, 236, 299, 311, 490, 777 |
| SspMI | CTAG | 4 cut(s) | 576, 888, 927, 1101 |
| StuI | AGGCCT | 1 cut(s) | 264 |
| StyD4I | CCNGG | 3 cut(s) | 93, 1056, 1227 |
| StyI | CCWWGG | 1 cut(s) | 575 |
| TaaI | ACNGT | 2 cut(s) | 1115, 1246 |
| TaqI | TCGA | 1 cut(s) | 363 |
| TauI | GCSGC | 2 cut(s) | 210, 779 |
| TfiI | GAWTC | 5 cut(s) | 372, 533, 680, 698, 1172 |
| Tru1I | TTAA | 5 cut(s) | 396, 834, 1325, 1398, 1498 |
| Tru9I | TTAA | 5 cut(s) | 396, 834, 1325, 1398, 1498 |
| TscAI | CASTG | 1 cut(s) | 768 |
| TseFI | GTSAC | 2 cut(s) | 86, 1070 |
| TseI | GCWGC | 3 cut(s) | 99, 985, 1276 |
| Tsp45I | GTSAC | 2 cut(s) | 86, 1070 |
| TspRI | CASTG | 1 cut(s) | 768 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1375 |
| Vha464I | CTTAAG | 1 cut(s) | 395 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 269 |
| XapI | RAATTY | 4 cut(s) | 633, 1063, 1122, 1313 |
| XmaJI | CCTAGG | 1 cut(s) | 575 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1122 |
| XspI | CTAG | 4 cut(s) | 576, 888, 927, 1101 |