FvH4_1g07160
NAC Family

inactive protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005833
Physical Location & Seq
Forward (+)
3783971 .. 3789055
5085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07160.t6

Sequence Viewer

Length: 1731 bp
ATGAAGGAGAGGAGGAATTCACTGGTGACTGGGAAAGTTGTGGTGGTTGCTGTTAAGGCTTTGAAGGAGATTCCAAACACAGCTCTGGTGTGGGCTTTAACTCATGTTGTGCAACCTGGAGATTACATTAAGCTTTTGGCAGTTGTTCCTTCACATACATCAAGTAATAGGATATGGGACTTTGCACGATTCACCAGTGATTGCACCAGAAGTCACCATTTGGCTCTCACAGGAACCATTTCAGATCAGAGGGATGAGATAGTGAACTCATGCTCTCAGATGGTGCAACAGCTCCAAGATGTTTATGATCCAGAGAAGATTAAGATCAGGATAAAAATCCTCTCTGGCTCACCATCTGGTGTTGTGGCTGCCGAAGCGAAGAAAGCTGAATCAAACTGGGTTATATTGGACAAACAATTGAAATATGAAAAGAAACACTGCATGGAACAACTGCAGTGCAATGTTGTGATTATGAAACGATCTGGGCCCAAGGTTCTTCGCTTGAATCTGGTTAACTCTACAAACAAGGAACCTGACGTGGCTTGCCCTTCATTGTATAACTTAGAATCATCACCAGAACGCCTAAAGAACAAGTTTGCACAGTGGAATATAAGTGGAGGGCCACCTGTGACTCCTACTGGTAGTTTTGACCATGAGTCACCACTGACGGCAACTGATATGGGATCATCGTCCATATCAAGCTCAGATATGGGGATTGAATCGTTACATTCTGGAATTGTCCGGAGATTGAAGCAAGAGTTTTCACATACCAGTGAAGGTAATGAGAATTTGAATGAATCTGACAATGAGATAAACAATGAAAAGACAAGTGCTTATTTAACGAGTTCATATTGCCAGCCCTGGATGGCAGATTATCTTAGTCCTGATGGCGAATTTTCTAGATATGGGGCTGGAGGTCCAGAGAGTTTTTATGATAAATCTATCATTTCAGCATATGGAGCCTTGCTAGATAAGTTCTCTAATTTAAATCGAGAGCCAGATGTTGGAGTCCTGAACTATAGGCTCGATTTGAACTTGAGTAGAAGTGTACGTGAAGCAATTTCCTTACCTAGAAATAGAAATTTACCTTCTATACCTCCTCCGTTGTGCTCTGTATGTCAGCACAAGGCACCTGTCTTTGGCAGTCCTCCGAGGTGGTTCACATATGCTGAGTTAGAACTTGCTACATGTGGTTTTTCAAAAGCCAACTTCTTGGCTGAAGGTGGGTTTGGCTCCGTACATAGAGGTGTCTTACCACATGGTCAGGTAGTTGCTGTCAAGCAGTATAAATTGGCTAGTTCTCAAGGAGATCAGGAATTCTGCTCAGAAGTTGAAGTGTTAAGCTGTGCACAGCATCGCAATGTTGTGATGCTAATTGGATTCTGTGTGGAGGATGGAAAGAGGTTGCTAGTATATGAATATATCTGCAATGGTTCTTTGGGTTCTCATCTATATGGGAAGGACCAACCTTCATTAAAATGGTTTGCACGACAAAGAATTGCAGTTGGAGCAGCTAGAGGATTGAGATACCTTCATGAAGAGTGTAGAGTAGGTTGCATTGTACACCGTGATTTACGACCTAACAATATCCTTCTGACCCATGATTTTGAACCATTGGTTGGAGATTTTGGACTAGCAAGGTGGCAACCTGACGGAGATATTGGGATGCAAACAAGAGTAATTGGAACATTTGGAATATGCTCAAAGTGGAGAAATTACGGAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

577

Amino Acids

64.04

Weight (kDa)

7.84

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 309 - 573 3.3e-40 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 310 - 575 5.8e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1129
AccB7I CCANNNNNTGG 2 cut(s) 1004, 1619
AccIII TCCGGA 1 cut(s) 741
AclWI GGATC 2 cut(s) 302, 691
AcsI RAATTY 5 cut(s) 16, 787, 893, 1081, 1316
AcuI CTGAAG 1 cut(s) 1239
AfaI GTAC 3 cut(s) 1050, 1239, 1563
AfiI CCNNNNNNNGG 3 cut(s) 1004, 1139, 1619
AflIII ACRYGT 1 cut(s) 1187
AhdI GACNNNNNGTC 1 cut(s) 655
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 2 cut(s) 115, 860
AjuI GAANNNNNNNTTGG 4 cut(s) 1212, 1244, 1602, 1634
AluBI AGCT 7 cut(s) 83, 133, 292, 386, 702, 1344, 1514
AluI AGCT 7 cut(s) 83, 133, 292, 386, 702, 1344, 1514
Alw21I GWGCWC 2 cut(s) 1112, 1351
Alw44I GTGCAC 1 cut(s) 1347
AlwI GGATC 2 cut(s) 302, 691
Aor13HI TCCGGA 1 cut(s) 741
AoxI GGCC 2 cut(s) 485, 620
ApaI GGGCCC 1 cut(s) 489
ApaLI GTGCAC 1 cut(s) 1347
ApeKI GCWGC 2 cut(s) 368, 1511
ApoI RAATTY 5 cut(s) 16, 787, 893, 1081, 1316
Asp700I GAANNNNTTC 1 cut(s) 238
AspS9I GGNCC 5 cut(s) 485, 486, 620, 917, 1462
AsuHPI GGTGA 6 cut(s) 37, 184, 206, 342, 564, 651
AvaII GGWCC 2 cut(s) 917, 1462
BaeGI GKGCMC 2 cut(s) 489, 1351
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 489
Bbv12I GWGCWC 2 cut(s) 1112, 1351
BbvI GCAGC 2 cut(s) 355, 1523
BccI CCATC 5 cut(s) 274, 361, 859, 881, 1388
BceAI ACGGC 1 cut(s) 684
BciT130I CCWGG 2 cut(s) 117, 862
BfaI CTAG 7 cut(s) 900, 968, 1071, 1296, 1409, 1515, 1634
BfmI CTRYAG 2 cut(s) 452, 1018
BisI GCNGC 2 cut(s) 369, 1512
BlsI GCNGC 2 cut(s) 370, 1513
Bme1390I CCNGG 2 cut(s) 117, 862
Bme18I GGWCC 2 cut(s) 917, 1462
BmeRI GACNNNNNGTC 1 cut(s) 655
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 5 cut(s) 485, 486, 620, 917, 1462
BmiI GGNNCC 6 cut(s) 235, 487, 531, 961, 1131, 1234
BmrFI CCNGG 2 cut(s) 117, 862
BmrI ACTGGG 2 cut(s) 39, 406
BmsI GCATC 3 cut(s) 1359, 1363, 1656
BmuI ACTGGG 2 cut(s) 39, 406
BpmI CTGGAG 2 cut(s) 138, 933
BpuEI CTTGAG 2 cut(s) 1057, 1287
BsaAI YACGTR 1 cut(s) 1052
BsaBI GATNNNNATC 2 cut(s) 323, 335
BsaJI CCNNGG 3 cut(s) 489, 860, 1151
BsaWI WCCGGW 1 cut(s) 741
Bsc4I CCNNNNNNNGG 3 cut(s) 1004, 1139, 1619
Bse1I ACTGG 6 cut(s) 27, 34, 195, 401, 643, 771
Bse3DI GCAATG 3 cut(s) 466, 1366, 1435
Bse8I GATNNNNATC 2 cut(s) 323, 335
BseAI TCCGGA 1 cut(s) 741
BseBI CCWGG 2 cut(s) 117, 862
BseDI CCNNGG 3 cut(s) 489, 860, 1151
BseGI GGATG 4 cut(s) 259, 870, 1399, 1671
BseJI GATNNNNATC 2 cut(s) 323, 335
BseLI CCNNNNNNNGG 3 cut(s) 1004, 1139, 1619
BseMI GCAATG 3 cut(s) 466, 1366, 1435
BseMII CTCAG 4 cut(s) 290, 717, 1161, 1338
BseNI ACTGG 6 cut(s) 27, 34, 195, 401, 643, 771
BseRI GAGGAG 2 cut(s) 25, 1089
BseSI GKGCMC 2 cut(s) 489, 1351
BseXI GCAGC 2 cut(s) 355, 1523
BshFI GGCC 2 cut(s) 487, 622
BshNI GGYRCC 1 cut(s) 1129
BsiHKAI GWGCWC 2 cut(s) 1112, 1351
BsiSI CCGG 1 cut(s) 742
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 3 cut(s) 1004, 1139, 1619
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 2 cut(s) 487, 622
Bsp120I GGGCCC 1 cut(s) 485
Bsp1286I GDGCHC 3 cut(s) 489, 1112, 1351
Bsp13I TCCGGA 1 cut(s) 741
Bsp1407I TGTACA 1 cut(s) 1561
Bsp143I GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
BspANI GGCC 2 cut(s) 487, 622
BspCNI CTCAG 4 cut(s) 289, 716, 1162, 1337
BspEI TCCGGA 1 cut(s) 741
BspHI TCATGA 1 cut(s) 1534
BspLI GGNNCC 6 cut(s) 235, 487, 531, 961, 1131, 1234
BspMAI CTGCAG 1 cut(s) 456
BspPI GGATC 2 cut(s) 302, 691
BspT107I GGYRCC 1 cut(s) 1129
BsrDI GCAATG 3 cut(s) 466, 1366, 1435
BsrGI TGTACA 1 cut(s) 1561
BsrI ACTGG 6 cut(s) 27, 34, 195, 401, 643, 771
BssECI CCNNGG 3 cut(s) 489, 860, 1151
BssMI GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 2 cut(s) 117, 862
Bst4CI ACNGT 2 cut(s) 603, 1568
Bst6I CTCTTC 1 cut(s) 1533
BstAUI TGTACA 1 cut(s) 1561
BstBAI YACGTR 1 cut(s) 1052
BstC8I GCNNGC 2 cut(s) 544, 857
BstDEI CTNAG 6 cut(s) 276, 562, 703, 878, 1170, 1324
BstF5I GGATG 4 cut(s) 259, 870, 1399, 1671
BstKTI GATC 6 cut(s) 247, 310, 327, 482, 686, 1312
BstMBI GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
BstMWI GCNNNNNNNGC 5 cut(s) 56, 374, 383, 959, 1508
BstNI CCWGG 2 cut(s) 117, 862
BstNSI RCATGY 1 cut(s) 1191
BstSCI CCNGG 2 cut(s) 115, 860
BstSFI CTRYAG 2 cut(s) 452, 1018
BstSLI GKGCMC 2 cut(s) 489, 1351
BstV1I GCAGC 2 cut(s) 355, 1523
BstXI CCANNNNNNTGG 1 cut(s) 1213
BsuRI GGCC 2 cut(s) 487, 622
BtgZI GCGATG 1 cut(s) 1340
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 4 cut(s) 259, 870, 1399, 1671
BtsI GCAGTG 2 cut(s) 436, 461
BtsIMutI CAGTG 7 cut(s) 20, 202, 436, 461, 608, 662, 778
Cac8I GCNNGC 2 cut(s) 544, 857
CciI TCATGA 1 cut(s) 1534
Cfr13I GGNCC 5 cut(s) 485, 486, 620, 917, 1462
Csp6I GTAC 3 cut(s) 1049, 1238, 1562
CviAII CATG 8 cut(s) 104, 270, 442, 653, 1188, 1259, 1535, 1601
CviQI GTAC 3 cut(s) 1049, 1238, 1562
DdeI CTNAG 6 cut(s) 276, 562, 703, 878, 1170, 1324
DpnI GATC 6 cut(s) 246, 309, 326, 481, 685, 1311
DpnII GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
DraI TTTAAA 1 cut(s) 987
DriI GACNNNNNGTC 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 1533
Eam1105I GACNNNNNGTC 1 cut(s) 655
EarI CTCTTC 1 cut(s) 1533
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 917, 1462
Eco57I CTGAAG 1 cut(s) 1239
EcoRI GAATTC 2 cut(s) 16, 1316
EcoRII CCWGG 2 cut(s) 115, 860
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 8 cut(s) 107, 273, 445, 656, 1191, 1262, 1538, 1604
FaqI GGGAC 1 cut(s) 191
FatI CATG 8 cut(s) 103, 269, 441, 652, 1187, 1258, 1534, 1600
FauNDI CATATG 2 cut(s) 955, 1165
Fnu4HI GCNGC 2 cut(s) 369, 1512
FokI GGATG 4 cut(s) 266, 877, 1406, 1678
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 2 cut(s) 369, 1512
FspBI CTAG 7 cut(s) 900, 968, 1071, 1296, 1409, 1515, 1634
GluI GCNGC 2 cut(s) 369, 1512
GsuI CTGGAG 2 cut(s) 138, 933
HaeIII GGCC 2 cut(s) 487, 622
HapII CCGG 1 cut(s) 742
Hin1II CATG 8 cut(s) 107, 273, 445, 656, 1191, 1262, 1538, 1604
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 131
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 1 cut(s) 742
HphI GGTGA 6 cut(s) 37, 184, 206, 342, 564, 651
Hpy166II GTNNAC 6 cut(s) 265, 514, 1049, 1161, 1349, 1564
Hpy188I TCNGA 8 cut(s) 244, 249, 279, 706, 802, 1152, 1327, 1596
Hpy8I GTNNAC 6 cut(s) 265, 514, 1049, 1161, 1349, 1564
HpyCH4III ACNGT 2 cut(s) 603, 1568
HpyCH4IV ACGT 2 cut(s) 537, 1051
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 374, 383, 959, 1508
HpyF3I CTNAG 6 cut(s) 276, 562, 703, 878, 1170, 1324
HpySE526I ACGT 2 cut(s) 537, 1051
Hsp92II CATG 8 cut(s) 107, 273, 445, 656, 1191, 1262, 1538, 1604
Kpn2I TCCGGA 1 cut(s) 741
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
LmnI GCTCC 4 cut(s) 297, 959, 1238, 1508
Lsp1109I GCAGC 2 cut(s) 355, 1523
LweI GCATC 3 cut(s) 1359, 1363, 1656
MaeI CTAG 7 cut(s) 900, 968, 1071, 1296, 1409, 1515, 1634
MaeII ACGT 2 cut(s) 537, 1051
MaeIII GTNAC 5 cut(s) 25, 212, 628, 657, 723
MalI GATC 6 cut(s) 246, 309, 326, 481, 685, 1311
MboI GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
MboII GAAGA 4 cut(s) 328, 391, 488, 1550
MfeI CAATTG 1 cut(s) 416
MhlI GDGCHC 3 cut(s) 489, 1112, 1351
MlyI GAGTC 3 cut(s) 625, 665, 1017
MmeI TCCRAC 3 cut(s) 985, 1486, 1600
MroI TCCGGA 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 238
MseI TTAA 9 cut(s) 54, 98, 129, 321, 513, 839, 986, 1340, 1475
MslI CAYNNNNRTG 5 cut(s) 771, 1245, 1359, 1452, 1477
MspI CCGG 1 cut(s) 742
MspR9I CCNGG 2 cut(s) 117, 862
MunI CAATTG 1 cut(s) 416
MvaI CCWGG 2 cut(s) 117, 862
MwoI GCNNNNNNNGC 5 cut(s) 56, 374, 383, 959, 1508
NdeI CATATG 2 cut(s) 955, 1165
NdeII GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
NlaIII CATG 8 cut(s) 107, 273, 445, 656, 1191, 1262, 1538, 1604
NlaIV GGNNCC 6 cut(s) 235, 487, 531, 961, 1131, 1234
NmuCI GTSAC 4 cut(s) 25, 212, 628, 657
NspI RCATGY 1 cut(s) 1191
PagI TCATGA 1 cut(s) 1534
PciI ACATGT 1 cut(s) 1187
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 8 cut(s) 70, 189, 389, 505, 566, 719, 797, 1380
PflMI CCANNNNNTGG 2 cut(s) 1004, 1619
PkrI GCNGC 2 cut(s) 370, 1513
PleI GAGTC 3 cut(s) 625, 664, 1016
PpsI GAGTC 3 cut(s) 625, 664, 1016
Ppu21I YACGTR 1 cut(s) 1052
PscI ACATGT 1 cut(s) 1187
Psp6I CCWGG 2 cut(s) 115, 860
PspGI CCWGG 2 cut(s) 115, 860
PspN4I GGNNCC 6 cut(s) 235, 487, 531, 961, 1131, 1234
PspOMI GGGCCC 1 cut(s) 485
PspPI GGNCC 5 cut(s) 485, 486, 620, 917, 1462
PstI CTGCAG 1 cut(s) 456
RsaI GTAC 3 cut(s) 1050, 1239, 1563
RsaNI GTAC 3 cut(s) 1049, 1238, 1562
RseI CAYNNNNRTG 5 cut(s) 771, 1245, 1359, 1452, 1477
SaqAI TTAA 9 cut(s) 54, 98, 129, 321, 513, 839, 986, 1340, 1475
SatI GCNGC 2 cut(s) 369, 1512
Sau3AI GATC 6 cut(s) 244, 307, 324, 479, 683, 1309
Sau96I GGNCC 5 cut(s) 485, 486, 620, 917, 1462
SchI GAGTC 3 cut(s) 625, 665, 1017
ScrFI CCNGG 2 cut(s) 117, 862
SduI GDGCHC 3 cut(s) 489, 1112, 1351
SfaNI GCATC 3 cut(s) 1359, 1363, 1656
SfcI CTRYAG 2 cut(s) 452, 1018
SinI GGWCC 2 cut(s) 917, 1462
SmiI ATTTAAAT 1 cut(s) 987
SmiMI CAYNNNNRTG 5 cut(s) 771, 1245, 1359, 1452, 1477
SmlI CTYRAG 2 cut(s) 1036, 1302
SmoI CTYRAG 2 cut(s) 1036, 1302
SspMI CTAG 7 cut(s) 900, 968, 1071, 1296, 1409, 1515, 1634
StyD4I CCNGG 2 cut(s) 115, 860
StyI CCWWGG 1 cut(s) 489
SwaI ATTTAAAT 1 cut(s) 987
TaaI ACNGT 2 cut(s) 603, 1568
TaiI ACGT 2 cut(s) 540, 1054
TaqI TCGA 2 cut(s) 991, 1026
TatI WGTACW 1 cut(s) 1561
TfiI GAWTC 8 cut(s) 70, 189, 389, 505, 566, 719, 797, 1380
Tru1I TTAA 9 cut(s) 54, 98, 129, 321, 513, 839, 986, 1340, 1475
Tru9I TTAA 9 cut(s) 54, 98, 129, 321, 513, 839, 986, 1340, 1475
TscAI CASTG 7 cut(s) 27, 202, 443, 461, 608, 669, 778
TseFI GTSAC 4 cut(s) 25, 212, 628, 657
TseI GCWGC 2 cut(s) 368, 1511
Tsp45I GTSAC 4 cut(s) 25, 212, 628, 657
TspGWI ACGGA 3 cut(s) 1092, 1225, 1668
TspRI CASTG 7 cut(s) 27, 202, 443, 461, 608, 669, 778
Van91I CCANNNNNTGG 2 cut(s) 1004, 1619
VneI GTGCAC 1 cut(s) 1347
VpaK11BI GGWCC 2 cut(s) 917, 1462
XapI RAATTY 5 cut(s) 16, 787, 893, 1081, 1316
XbaI TCTAGA 1 cut(s) 899
XceI RCATGY 1 cut(s) 1191
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 7 cut(s) 900, 968, 1071, 1296, 1409, 1515, 1634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.