FvH4_1g15570

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017576
Physical Location & Seq
Reverse (-)
8839272 .. 8840261
990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15570.t1

Sequence Viewer

Length: 990 bp
ATGGAGTCATCATATGATGAGTCCAGATCACCCCACCTGAAGTACAAACCGAGTAAGTGGGATGAAAGCCAAGACAATCCAGTTGGGTCTAAGATGGCAGAACTGATCAAAACCAAGGAGGAGCTGAAGAAAGCTAGAGAGAGCACCATGCAGCTATGGCTAGACTCCAAGCCTCTCATCGACGAGCTAGAAAGGCTGAAATCGAACCTTGCAAGTGCTCAAAACCGGAGCGCCACGCCCATTACTAAGATCTCCGAGCTGAAAGAACAGCTTGATGCAACCCACGCATCCATCAAGGCCAAAAAAGATGAAGAACTAAAGGCGAGAAACATGATCGATGAAACAAATCAGGCTTTGGATCAAACACCTCGTGAGATTGTAAGCATCAACTTGGAGACAGAAGAAGAACATAAAGCAATGGGACGAATGATGCGAGGCATGCGGCTGAGGAGACAGACTCTACGAACGCTGCATCTAACACTTCGAGCTGTAAGAATTGAAAAGGATGCCATTGCAGCATCAGCAGCAGAAGCACTTCAGTACATGAACTATGCAGAAATGGATCATTCTACAGTCACCATCAGCCATGAAGACTACCCGGGCTTGATGAAAAGAGCTCAGGATGAAAATTCTCTATCAGACTGGCGTGTTTTGGTTTGTACAGAACAGAAGCTTACAGCTGAGGCAAACCGCGACAAAGCTTCAGCAAGACTGGATGAACTGTACGCCCAGTTAAAAGCAAGAGCAGGAGAGATCAAAGAAGAAGAATATTATGGAGGTGGACAGACCCCGAGAAGTGAGAATGAAGGCCAATTGACCACAGTGGAGAATCAGAGAAGAGTTTTACCGATGCCAACTCCAAGATATCCAAGAGAACAGCGAAGAATAAGACGTGAGGACTACATGAAGCTGGCTGCAAAAGTGAAACCATCTTATCTGAAACAAATAAAACACTTTCTTGGAGGTGCCTGCCTTAGACCCCAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

330

Amino Acids

37.93

Weight (kDa)

8.92

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 18 - 253 1.3e-14 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15570
prunus_persica Prupe.7G137300_v2.0.a1
pyrus_communis pycom02g13480
rosa_laevigata RLG00000017366
rosa_multiflora Rmu_sc0003419.1_g000005
rosa_roxburghii Rroxscaffold_2G00138690
rosa_rugosa Rorug02G0123800
rosa_samantha Rh2AG174000 Rh2BG181600 Rh2CG178900 Rh2DG180300
rosa_wichuraiana Rw2G013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 965
AccII CGCG 1 cut(s) 693
AciI CCGC 2 cut(s) 442, 691
AclWI GGATC 2 cut(s) 366, 570
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 4 cut(s) 59, 146, 521, 687
AdeI CACNNNGTG 1 cut(s) 371
AfaI GTAC 4 cut(s) 44, 542, 661, 725
AgsI TTSAA 1 cut(s) 500
AjiI CACGTC 1 cut(s) 893
Alw21I GWGCWC 3 cut(s) 146, 220, 619
Alw26I GTCTC 2 cut(s) 389, 445
AlwI GGATC 2 cut(s) 366, 570
Ama87I CYCGRG 2 cut(s) 598, 790
AoxI GGCC 2 cut(s) 297, 808
ApeKI GCWGC 5 cut(s) 151, 469, 515, 524, 914
ApoI RAATTY 1 cut(s) 628
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 233
AsuC2I CCSGG 2 cut(s) 599, 600
AsuHPI GGTGA 2 cut(s) 21, 568
AvaI CYCGRG 2 cut(s) 598, 790
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 1 cut(s) 619
BauI CACGAG 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 3 cut(s) 146, 220, 619
BbvCI CCTCAGC 2 cut(s) 446, 681
BbvI GCAGC 5 cut(s) 163, 456, 527, 536, 901
BccI CCATC 4 cut(s) 88, 299, 587, 937
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 2 cut(s) 599, 600
BcoDI GTCTC 2 cut(s) 389, 445
BfaI CTAG 3 cut(s) 135, 161, 188
BfmI CTRYAG 1 cut(s) 570
BfoI RGCGCY 1 cut(s) 234
BglII AGATCT 1 cut(s) 249
BisI GCNGC 6 cut(s) 152, 443, 470, 516, 525, 915
BlsI GCNGC 6 cut(s) 153, 444, 471, 517, 526, 916
Bme1390I CCNGG 2 cut(s) 599, 600
BmeT110I CYCGRG 2 cut(s) 598, 790
BmgBI CACGTC 1 cut(s) 893
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 2 cut(s) 599, 600
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 8 cut(s) 265, 296, 393, 420, 481, 496, 527, 840
BmuI ACTGGG 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 597
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 3 cut(s) 446, 618, 681
BpuMI CCSGG 2 cut(s) 599, 600
Bsa29I ATCGAT 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 114, 598
BsaWI WCCGGW 1 cut(s) 225
Bse1I ACTGG 4 cut(s) 80, 647, 717, 730
Bse3DI GCAATG 2 cut(s) 423, 510
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 114, 598
BseGI GGATG 5 cut(s) 67, 287, 511, 628, 721
BseMI GCAATG 2 cut(s) 423, 510
BseMII CTCAG 3 cut(s) 437, 632, 672
BseNI ACTGG 4 cut(s) 80, 647, 717, 730
BseRI GAGGAG 2 cut(s) 134, 463
BseXI GCAGC 5 cut(s) 163, 456, 527, 536, 901
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 2 cut(s) 299, 810
BshNI GGYRCC 1 cut(s) 965
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 3 cut(s) 146, 220, 619
BsiHKCI CYCGRG 2 cut(s) 598, 790
BsiSI CCGG 2 cut(s) 226, 599
BslFI GGGAC 1 cut(s) 435
BsmAI GTCTC 2 cut(s) 389, 445
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 2 cut(s) 299, 810
BsoBI CYCGRG 2 cut(s) 598, 790
Bsp1286I GDGCHC 3 cut(s) 146, 220, 619
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
BspACI CCGC 2 cut(s) 442, 691
BspANI GGCC 2 cut(s) 299, 810
BspCNI CTCAG 3 cut(s) 438, 631, 673
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 1 cut(s) 967
BspPI GGATC 2 cut(s) 366, 570
BspT107I GGYRCC 1 cut(s) 965
BsrDI GCAATG 2 cut(s) 423, 510
BsrGI TGTACA 1 cut(s) 659
BsrI ACTGG 4 cut(s) 80, 647, 717, 730
BssECI CCNNGG 2 cut(s) 114, 598
BssMI GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 369
Bst4CI ACNGT 3 cut(s) 574, 723, 823
Bst6I CTCTTC 1 cut(s) 832
BstAUI TGTACA 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 440, 912, 970
BstDEI CTNAG 6 cut(s) 90, 246, 446, 618, 681, 974
BstF5I GGATG 5 cut(s) 67, 287, 511, 628, 721
BstFNI CGCG 1 cut(s) 693
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 7 cut(s) 29, 108, 252, 336, 361, 565, 756
BstMAI GTCTC 2 cut(s) 389, 445
BstMBI GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
BstMWI GCNNNNNNNGC 8 cut(s) 157, 193, 284, 439, 515, 521, 524, 530
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 597, 598
BstSFI CTRYAG 1 cut(s) 570
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 5 cut(s) 163, 456, 527, 536, 901
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 2 cut(s) 299, 810
BsuTUI ATCGAT 1 cut(s) 336
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 5 cut(s) 67, 287, 511, 628, 721
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 3 cut(s) 440, 912, 970
CfoI GCGC 1 cut(s) 233
Cfr9I CCCGGG 1 cut(s) 598
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 4 cut(s) 43, 541, 660, 724
CviAII CATG 6 cut(s) 148, 331, 439, 544, 587, 904
CviQI GTAC 4 cut(s) 43, 541, 660, 724
DdeI CTNAG 6 cut(s) 90, 246, 446, 618, 681, 974
DpnI GATC 7 cut(s) 28, 107, 251, 335, 360, 564, 755
DpnII GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
DraIII CACNNNGTG 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Ecl136II GAGCTC 1 cut(s) 617
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 619
Eco32I GATATC 1 cut(s) 866
Eco53kI GAGCTC 1 cut(s) 617
Eco57I CTGAAG 4 cut(s) 59, 146, 521, 687
Eco88I CYCGRG 2 cut(s) 598, 790
EcoICRI GAGCTC 1 cut(s) 617
EcoRV GATATC 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 151, 334, 442, 547, 590, 907
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 435
FatI CATG 6 cut(s) 147, 330, 438, 543, 586, 903
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 6 cut(s) 152, 443, 470, 516, 525, 915
FokI GGATG 5 cut(s) 74, 274, 518, 635, 728
FriOI GRGCYC 1 cut(s) 619
Fsp4HI GCNGC 6 cut(s) 152, 443, 470, 516, 525, 915
FspBI CTAG 3 cut(s) 135, 161, 188
GlaI GCGC 1 cut(s) 232
GluI GCNGC 6 cut(s) 152, 443, 470, 516, 525, 915
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 299, 810
HapII CCGG 2 cut(s) 226, 599
HhaI GCGC 1 cut(s) 233
Hin1II CATG 6 cut(s) 151, 334, 442, 547, 590, 907
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 2 cut(s) 671, 699
HinfI GANTC 5 cut(s) 5, 20, 164, 457, 829
HpaII CCGG 2 cut(s) 226, 599
HphI GGTGA 2 cut(s) 21, 568
Hpy166II GTNNAC 1 cut(s) 782
Hpy188I TCNGA 4 cut(s) 256, 640, 834, 939
Hpy188III TCNNGA 3 cut(s) 24, 371, 620
Hpy8I GTNNAC 1 cut(s) 782
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 800
HpyCH4III ACNGT 3 cut(s) 574, 723, 823
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 7 cut(s) 151, 212, 278, 472, 515, 554, 917
HpyF10VI GCNNNNNNNGC 8 cut(s) 157, 193, 284, 439, 515, 521, 524, 530
HpyF3I CTNAG 6 cut(s) 90, 246, 446, 618, 681, 974
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 6 cut(s) 151, 334, 442, 547, 590, 907
HspAI GCGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
LmnI GCTCC 2 cut(s) 121, 228
Lsp1109I GCAGC 5 cut(s) 163, 456, 527, 536, 901
LweI GCATC 8 cut(s) 265, 296, 393, 420, 481, 496, 527, 840
MaeI CTAG 3 cut(s) 135, 161, 188
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 1 cut(s) 574
MalI GATC 7 cut(s) 28, 107, 251, 335, 360, 564, 755
MboI GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
MboII GAAGA 9 cut(s) 139, 323, 413, 416, 602, 773, 776, 849, 894
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 1 cut(s) 249
MhlI GDGCHC 3 cut(s) 146, 220, 619
MluCI AATT 3 cut(s) 495, 628, 812
MlyI GAGTC 4 cut(s) 14, 29, 158, 451
MnlI CCTC 9 cut(s) 112, 183, 378, 428, 441, 676, 770, 889, 956
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 2 cut(s) 226, 599
MspR9I CCNGG 2 cut(s) 599, 600
MunI CAATTG 1 cut(s) 812
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 8 cut(s) 157, 193, 284, 439, 515, 521, 524, 530
NciI CCSGG 2 cut(s) 599, 600
NdeI CATATG 1 cut(s) 13
NdeII GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
NlaIII CATG 6 cut(s) 151, 334, 442, 547, 590, 907
NlaIV GGNNCC 1 cut(s) 967
NmuCI GTSAC 1 cut(s) 574
NspI RCATGY 1 cut(s) 442
PaeI GCATGC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 829
PkrI GCNGC 6 cut(s) 153, 444, 471, 517, 526, 916
PleI GAGTC 4 cut(s) 13, 28, 158, 451
PpsI GAGTC 4 cut(s) 13, 28, 158, 451
Psp124BI GAGCTC 1 cut(s) 619
PspN4I GGNNCC 1 cut(s) 967
PsuI RGATCY 1 cut(s) 249
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 4 cut(s) 44, 542, 661, 725
RsaNI GTAC 4 cut(s) 43, 541, 660, 724
SacI GAGCTC 1 cut(s) 619
SaqAI TTAA 1 cut(s) 734
SatI GCNGC 6 cut(s) 152, 443, 470, 516, 525, 915
Sau3AI GATC 7 cut(s) 26, 105, 249, 333, 358, 562, 753
SchI GAGTC 4 cut(s) 14, 29, 158, 451
ScrFI CCNGG 2 cut(s) 599, 600
SduI GDGCHC 3 cut(s) 146, 220, 619
SfaNI GCATC 8 cut(s) 265, 296, 393, 420, 481, 496, 527, 840
SfcI CTRYAG 1 cut(s) 570
SmaI CCCGGG 1 cut(s) 600
SphI GCATGC 1 cut(s) 442
Sse9I AATT 3 cut(s) 495, 628, 812
SsiI CCGC 2 cut(s) 442, 691
SspI AATATT 1 cut(s) 770
SspMI CTAG 3 cut(s) 135, 161, 188
SstI GAGCTC 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 597, 598
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 574, 723, 823
TaiI ACGT 1 cut(s) 895
TaqI TCGA 4 cut(s) 180, 203, 336, 484
TasI AATT 3 cut(s) 495, 628, 812
TatI WGTACW 3 cut(s) 42, 540, 659
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 1 cut(s) 829
Tru1I TTAA 1 cut(s) 734
Tru9I TTAA 1 cut(s) 734
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 5 cut(s) 151, 469, 515, 524, 914
Tsp45I GTSAC 1 cut(s) 574
TspMI CCCGGG 1 cut(s) 598
TspRI CASTG 1 cut(s) 828
XapI RAATTY 1 cut(s) 628
XceI RCATGY 1 cut(s) 442
XmaI CCCGGG 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 3 cut(s) 135, 161, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.