Rh2CG178900

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017576
Physical Location & Seq
Reverse (-)
16407368 .. 16408386
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG178900.1

Sequence Viewer

Length: 993 bp
ATGGAATCATCATATGATGAGTCAAGATCACCCCACTTGAAGTACAAACCGAGCAAGTGGGACGAAAGCCAAGACAAGCCAGTGGGGTCTAAGATGGCAGAACTGATCAAAACCAAGGCAGAGCTCAAGAAAGCTAGAGAGAGCACCATGCAGCTATGGCTAGACTCCAAGCCTCTCATCGACGAGCTTGAAATGCTGAAATCTGGCCTTGCAAGAGCTGAAAACCAGTGCGCCACGCCCAATACTACTATGATCTCCGAGCTGAAATCACAGCTGGATGAAACCCACGCATCCATCAAGGCCAAAAAGGAGGACGAACTAAAGGCGGGAAACATGATCGATGAAACAAATCAGGCTTTGGATCAAACACGTCGAGAGATTGTAAGCATCAACTTGGAGACAGATGAAGAACGGAAAGCAATAGCAAGAATGACACAAGACATGCAGCTGAGGAGACAGACTCTACGAACGCTGCATCTTACACTTCGAGCTGTAAGAATCGAAAAGGATGCTATTGCCGCATCAGCAGCAGAAGCTCTTCAGTACATGAACTATTCAGAAATGGATAATTCTAGAGTCAACATCAGCCACGAAGAGTACCCTGGCTTGATGAAAAGAGCTCAAGACGAAAACTCTCTTTCAGACTGGCGTATTGTGGTTTGTACAGAACAGAAGCTTACAGCTGAGGCAAGCCGAGACAAAGCTTCGGCAAAACTAAACGAATTGTACTCTCAGCTAACATTAAGAGTAGGAGAAATCAAAGAAGAAGAATATTATGGAGGTGGGCAGACCCCGAGAATTGAGAACGAAGACCAGATGATCACAACGGAGAATCAGCGAAGAGTATTACCAAAGCCAACTCCAAGACATCCAAGACAACAGCGGAGAATAAGGCGTGAGAACTACATGAAGCTGGCTGCAAAAGTGAAACCATCTTATTTGCAACAAATAAAACTCTTTTTTGGAGGCGTTTGCCTCAGACCCAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

330

Amino Acids

38.1

Weight (kDa)

8.73

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 18 - 250 4e-12 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15570
prunus_persica Prupe.7G137300_v2.0.a1
pyrus_communis pycom02g13480
rosa_laevigata RLG00000017366
rosa_multiflora Rmu_sc0003419.1_g000005
rosa_roxburghii Rroxscaffold_2G00138690
rosa_rugosa Rorug02G0123800
rosa_samantha Rh2AG174000 Rh2BG181600 Rh2CG178900 Rh2DG180300
rosa_wichuraiana Rw2G013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 326, 519, 883
AclWI GGATC 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 5 cut(s) 44, 545, 599, 664, 728
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 2 cut(s) 40, 191
AjiI CACGTC 1 cut(s) 371
AjnI CCWGG 1 cut(s) 601
Alw21I GWGCWC 3 cut(s) 126, 146, 622
Alw26I GTCTC 3 cut(s) 392, 448, 690
AlwI GGATC 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 793
AoxI GGCC 2 cut(s) 205, 300
ApeKI GCWGC 5 cut(s) 151, 445, 472, 527, 917
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 793
BanII GRGCYC 2 cut(s) 126, 622
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 3 cut(s) 126, 146, 622
BbvCI CCTCAGC 2 cut(s) 449, 684
BbvI GCAGC 5 cut(s) 163, 457, 459, 539, 904
BccI CCATC 3 cut(s) 88, 302, 940
BcgI CGANNNNNNTGC 2 cut(s) 491, 525
BciT130I CCWGG 1 cut(s) 603
BclI TGATCA 2 cut(s) 105, 819
BcoDI GTCTC 3 cut(s) 392, 448, 690
BfaI CTAG 3 cut(s) 135, 161, 573
BisI GCNGC 6 cut(s) 152, 446, 473, 519, 528, 918
BlsI GCNGC 6 cut(s) 153, 447, 474, 520, 529, 919
Bme1390I CCNGG 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 793
BmgBI CACGTC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 5 cut(s) 299, 396, 484, 499, 530
BpiI GAAGAC 1 cut(s) 816
BplI GAGNNNNNCTC 2 cut(s) 445, 477
Bpu10I CCTNAGC 2 cut(s) 449, 684
BpuEI CTTGAG 2 cut(s) 110, 606
Bsa29I ATCGAT 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 114, 601
Bse1I ACTGG 3 cut(s) 80, 226, 650
BseBI CCWGG 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 114, 601
BseGI GGATG 4 cut(s) 283, 290, 514, 868
BseMII CTCAG 4 cut(s) 440, 675, 746, 991
BseNI ACTGG 3 cut(s) 80, 226, 650
BseRI GAGGAG 1 cut(s) 466
BseXI GCAGC 5 cut(s) 163, 457, 459, 539, 904
BshFI GGCC 2 cut(s) 207, 302
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 3 cut(s) 126, 146, 622
BsiHKCI CYCGRG 1 cut(s) 793
BslFI GGGAC 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 392, 448, 690
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 207, 302
BsoBI CYCGRG 1 cut(s) 793
Bsp1286I GDGCHC 3 cut(s) 126, 146, 622
Bsp1407I TGTACA 1 cut(s) 662
Bsp143I GATC 6 cut(s) 26, 105, 252, 336, 361, 819
BspACI CCGC 3 cut(s) 326, 519, 883
BspANI GGCC 2 cut(s) 207, 302
BspCNI CTCAG 4 cut(s) 441, 676, 745, 990
BspDI ATCGAT 1 cut(s) 339
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 543
BsrGI TGTACA 1 cut(s) 662
BsrI ACTGG 3 cut(s) 80, 226, 650
BssECI CCNNGG 2 cut(s) 114, 601
BssMI GATC 6 cut(s) 26, 105, 252, 336, 361, 819
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 3 cut(s) 543, 588, 835
BstAUI TGTACA 1 cut(s) 662
BstC8I GCNNGC 2 cut(s) 691, 915
BstDEI CTNAG 5 cut(s) 90, 449, 684, 732, 977
BstF5I GGATG 4 cut(s) 283, 290, 514, 868
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 6 cut(s) 29, 108, 255, 339, 364, 822
BstMAI GTCTC 3 cut(s) 392, 448, 690
BstMBI GATC 6 cut(s) 26, 105, 252, 336, 361, 819
BstMWI GCNNNNNNNGC 6 cut(s) 157, 193, 518, 524, 527, 533
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 601
BstV1I GCAGC 5 cut(s) 163, 457, 459, 539, 904
BstV2I GAAGAC 1 cut(s) 816
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 2 cut(s) 207, 302
BsuTUI ATCGAT 1 cut(s) 339
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 4 cut(s) 283, 290, 514, 868
BtsIMutI CAGTG 2 cut(s) 87, 233
Cac8I GCNNGC 2 cut(s) 691, 915
CfoI GCGC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 5 cut(s) 43, 544, 598, 663, 727
CviAII CATG 5 cut(s) 148, 334, 442, 547, 907
CviQI GTAC 5 cut(s) 43, 544, 598, 663, 727
DdeI CTNAG 5 cut(s) 90, 449, 684, 732, 977
DpnI GATC 6 cut(s) 28, 107, 254, 338, 363, 821
DpnII GATC 6 cut(s) 26, 105, 252, 336, 361, 819
Eam1104I CTCTTC 3 cut(s) 543, 588, 835
EarI CTCTTC 3 cut(s) 543, 588, 835
Ecl136II GAGCTC 2 cut(s) 124, 620
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 126, 622
Eco53kI GAGCTC 2 cut(s) 124, 620
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 1 cut(s) 793
EcoICRI GAGCTC 2 cut(s) 124, 620
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 126, 622
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 151, 337, 445, 550, 910
FaqI GGGAC 1 cut(s) 74
FatI CATG 5 cut(s) 147, 333, 441, 546, 906
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 2 cut(s) 105, 819
Fnu4HI GCNGC 6 cut(s) 152, 446, 473, 519, 528, 918
FokI GGATG 4 cut(s) 277, 290, 521, 855
FriOI GRGCYC 2 cut(s) 126, 622
Fsp4HI GCNGC 6 cut(s) 152, 446, 473, 519, 528, 918
FspBI CTAG 3 cut(s) 135, 161, 573
GlaI GCGC 1 cut(s) 232
GluI GCNGC 6 cut(s) 152, 446, 473, 519, 528, 918
HaeIII GGCC 2 cut(s) 207, 302
HhaI GCGC 1 cut(s) 233
Hin1II CATG 5 cut(s) 151, 337, 445, 550, 910
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 2 cut(s) 674, 702
HinfI GANTC 7 cut(s) 5, 20, 164, 460, 498, 576, 832
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 580
Hpy188I TCNGA 4 cut(s) 259, 559, 643, 980
Hpy188III TCNNGA 5 cut(s) 24, 127, 374, 573, 623
Hpy8I GTNNAC 1 cut(s) 580
Hpy99I CGWCG 2 cut(s) 185, 375
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 6 cut(s) 151, 212, 445, 475, 920, 943
HpyF10VI GCNNNNNNNGC 6 cut(s) 157, 193, 518, 524, 527, 533
HpyF3I CTNAG 5 cut(s) 90, 449, 684, 732, 977
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 5 cut(s) 151, 337, 445, 550, 910
HspAI GCGC 1 cut(s) 231
Ksp22I TGATCA 2 cut(s) 105, 819
Kzo9I GATC 6 cut(s) 26, 105, 252, 336, 361, 819
LguI GCTCTTC 1 cut(s) 543
Lsp1109I GCAGC 5 cut(s) 163, 457, 459, 539, 904
LweI GCATC 5 cut(s) 299, 396, 484, 499, 530
MaeI CTAG 3 cut(s) 135, 161, 573
MaeII ACGT 1 cut(s) 370
MalI GATC 6 cut(s) 28, 107, 254, 338, 363, 821
MboI GATC 6 cut(s) 26, 105, 252, 336, 361, 819
MboII GAAGA 7 cut(s) 419, 530, 605, 776, 779, 821, 852
MhlI GDGCHC 3 cut(s) 126, 146, 622
MluCI AATT 3 cut(s) 568, 722, 798
MlyI GAGTC 4 cut(s) 29, 158, 454, 585
MnlI CCTC 7 cut(s) 183, 304, 444, 679, 773, 959, 986
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 1 cut(s) 743
MspA1I CMGCKG 4 cut(s) 274, 448, 683, 883
MspR9I CCNGG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 6 cut(s) 157, 193, 518, 524, 527, 533
NdeI CATATG 1 cut(s) 13
NdeII GATC 6 cut(s) 26, 105, 252, 336, 361, 819
NlaIII CATG 5 cut(s) 151, 337, 445, 550, 910
NmeAIII GCCGAG 1 cut(s) 719
NspI RCATGY 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 543
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 5, 498, 832
PkrI GCNGC 6 cut(s) 153, 447, 474, 520, 529, 919
PleI GAGTC 4 cut(s) 28, 158, 454, 584
PpsI GAGTC 4 cut(s) 28, 158, 454, 584
Psp124BI GAGCTC 2 cut(s) 126, 622
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PvuII CAGCTG 3 cut(s) 274, 448, 683
RsaI GTAC 5 cut(s) 44, 545, 599, 664, 728
RsaNI GTAC 5 cut(s) 43, 544, 598, 663, 727
SacI GAGCTC 2 cut(s) 126, 622
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 6 cut(s) 152, 446, 473, 519, 528, 918
Sau3AI GATC 6 cut(s) 26, 105, 252, 336, 361, 819
SchI GAGTC 4 cut(s) 29, 158, 454, 585
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 3 cut(s) 126, 146, 622
SfaNI GCATC 5 cut(s) 299, 396, 484, 499, 530
SmlI CTYRAG 2 cut(s) 125, 621
SmoI CTYRAG 2 cut(s) 125, 621
Sse9I AATT 3 cut(s) 568, 722, 798
SsiI CCGC 3 cut(s) 326, 519, 883
SspI AATATT 1 cut(s) 773
SspMI CTAG 3 cut(s) 135, 161, 573
SstI GAGCTC 2 cut(s) 126, 622
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 373
TaqI TCGA 5 cut(s) 180, 339, 373, 487, 501
TasI AATT 3 cut(s) 568, 722, 798
TatI WGTACW 4 cut(s) 42, 543, 662, 726
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 3 cut(s) 5, 498, 832
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 2 cut(s) 87, 233
TseI GCWGC 5 cut(s) 151, 445, 472, 527, 917
TspDTI ATGAA 6 cut(s) 294, 357, 420, 563, 626, 923
TspGWI ACGGA 2 cut(s) 427, 842
TspRI CASTG 2 cut(s) 87, 233
XbaI TCTAGA 1 cut(s) 572
XceI RCATGY 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 3 cut(s) 135, 161, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.