Rh2DG180300

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017576
Physical Location & Seq
Reverse (-)
15904555 .. 15905567
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG180300.1

Sequence Viewer

Length: 1005 bp
ATGCAAAGAAAAATGGAATCATCATATGATGAGTCAAGATCACCCCACTTGAAGTACAAACCGAGCAAGTGGGACGAAAGCCAAGACAAGCCAGTGGGGTCTAAGATGGCAGAACTGATCAAAACCAAGGCAGAGCTCAAGAAAGCTAGAGAGAGCACCATGCAGCTATGGCTAGACTCCAAGCCTCTCATCGACGAGCTTGAAATGCTGAAATCTGGCCTTGCAAGAGCTGAAAACCAGTGCGCCACGCCCAATACTACTATGATCTCCGAGCTGAAATCACAGCTGGATGAAACCCACGCATCCATCAAGGCCAAAAAGGAGGACGAACTAAAGGCGGGAAACATGATCGATGAAACAAATCAGGCTTTGGATCAAACACGTCGAGAGATTGTAAGCATCAACTTGGAGACAGATGAAGAACGGAAAGCAATAGCAAGAATGACACAAGACATGCAGCTGAGGAGACAGACTCTACGAACGCTGCATCTTACACTTCGAGCTGTAAGAATCGAAAAGGATGCTATTGCCGCATCAGCAGCAGAAGCTCTTCAGTACATGAACTATTCAGAAATGGATAATTCTAGAGTCAACATCAGCCACGAAGAGTACCCTGGCTTGATGAAAAGAGCTCAAGACGAAAACTCTCTTTCAGACTGGCGTATTGTGGTTTGTACAGAACAGAAGCTTACAGCTGAGGCAAGCCGAGACAAAGCTTCGGCAAAACTGAACGAATTGTACTCTCAGCTAACATTAAGAGTAGGAGAAATCAAAGAAGAAGAATATTATGGAGGTGGGCAGACCCCGAGAATTGAGAACGAAGACCAAATGATCACAACGGAGAATCAGCGAAGAGTATTACCAAAGCCAACTCCAAGACATCCAAGACAACAGCGGAGAATAAGGCGTGAGAACTACATGAAGCTGGCTGCAAAAGTGAAACCATCTTATTTGCAACAAATAAAACTCTTTTTTGGAGGTGTTTGCCTCAGACCCAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

334

Amino Acids

38.65

Weight (kDa)

8.98

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 18 - 254 6e-12 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15570
prunus_persica Prupe.7G137300_v2.0.a1
pyrus_communis pycom02g13480
rosa_laevigata RLG00000017366
rosa_multiflora Rmu_sc0003419.1_g000005
rosa_roxburghii Rroxscaffold_2G00138690
rosa_rugosa Rorug02G0123800
rosa_samantha Rh2AG174000 Rh2BG181600 Rh2CG178900 Rh2DG180300
rosa_wichuraiana Rw2G013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 338, 531, 895
AclWI GGATC 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 536
AfaI GTAC 5 cut(s) 56, 557, 611, 676, 740
AflIII ACRYGT 1 cut(s) 380
AgsI TTSAA 2 cut(s) 52, 203
AjiI CACGTC 1 cut(s) 383
AjnI CCWGG 1 cut(s) 613
Alw21I GWGCWC 3 cut(s) 138, 158, 634
Alw26I GTCTC 3 cut(s) 404, 460, 702
AlwI GGATC 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 805
AoxI GGCC 2 cut(s) 217, 312
ApeKI GCWGC 5 cut(s) 163, 457, 484, 539, 929
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 805
BanII GRGCYC 2 cut(s) 138, 634
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 3 cut(s) 138, 158, 634
BbvCI CCTCAGC 2 cut(s) 461, 696
BbvI GCAGC 5 cut(s) 175, 469, 471, 551, 916
BccI CCATC 3 cut(s) 100, 314, 952
BcgI CGANNNNNNTGC 2 cut(s) 503, 537
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 2 cut(s) 117, 831
BcoDI GTCTC 3 cut(s) 404, 460, 702
BfaI CTAG 3 cut(s) 147, 173, 585
BisI GCNGC 6 cut(s) 164, 458, 485, 531, 540, 930
BlsI GCNGC 6 cut(s) 165, 459, 486, 532, 541, 931
Bme1390I CCNGG 1 cut(s) 615
BmeT110I CYCGRG 1 cut(s) 805
BmgBI CACGTC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 5 cut(s) 311, 408, 496, 511, 542
BpiI GAAGAC 1 cut(s) 828
BplI GAGNNNNNCTC 2 cut(s) 457, 489
Bpu10I CCTNAGC 2 cut(s) 461, 696
BpuEI CTTGAG 2 cut(s) 122, 618
Bsa29I ATCGAT 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 126, 613
Bse1I ACTGG 3 cut(s) 92, 238, 662
BseBI CCWGG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 126, 613
BseGI GGATG 4 cut(s) 295, 302, 526, 880
BseMII CTCAG 4 cut(s) 452, 687, 758, 1003
BseNI ACTGG 3 cut(s) 92, 238, 662
BseRI GAGGAG 1 cut(s) 478
BseXI GCAGC 5 cut(s) 175, 469, 471, 551, 916
BshFI GGCC 2 cut(s) 219, 314
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 3 cut(s) 138, 158, 634
BsiHKCI CYCGRG 1 cut(s) 805
BslFI GGGAC 1 cut(s) 86
BsmAI GTCTC 3 cut(s) 404, 460, 702
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 219, 314
BsoBI CYCGRG 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 138, 158, 634
Bsp1407I TGTACA 1 cut(s) 674
Bsp143I GATC 6 cut(s) 38, 117, 264, 348, 373, 831
BspACI CCGC 3 cut(s) 338, 531, 895
BspANI GGCC 2 cut(s) 219, 314
BspCNI CTCAG 4 cut(s) 453, 688, 757, 1002
BspDI ATCGAT 1 cut(s) 351
BspPI GGATC 1 cut(s) 381
BspQI GCTCTTC 1 cut(s) 555
BsrGI TGTACA 1 cut(s) 674
BsrI ACTGG 3 cut(s) 92, 238, 662
BssECI CCNNGG 2 cut(s) 126, 613
BssMI GATC 6 cut(s) 38, 117, 264, 348, 373, 831
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 615
Bst6I CTCTTC 3 cut(s) 555, 600, 847
BstAUI TGTACA 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 703, 927
BstDEI CTNAG 5 cut(s) 102, 461, 696, 744, 989
BstF5I GGATG 4 cut(s) 295, 302, 526, 880
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 6 cut(s) 41, 120, 267, 351, 376, 834
BstMAI GTCTC 3 cut(s) 404, 460, 702
BstMBI GATC 6 cut(s) 38, 117, 264, 348, 373, 831
BstMWI GCNNNNNNNGC 6 cut(s) 169, 205, 530, 536, 539, 545
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 613
BstV1I GCAGC 5 cut(s) 175, 469, 471, 551, 916
BstV2I GAAGAC 1 cut(s) 828
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 2 cut(s) 219, 314
BsuTUI ATCGAT 1 cut(s) 351
BtrI CACGTC 1 cut(s) 383
BtsCI GGATG 4 cut(s) 295, 302, 526, 880
BtsIMutI CAGTG 2 cut(s) 99, 245
Cac8I GCNNGC 2 cut(s) 703, 927
CfoI GCGC 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 5 cut(s) 55, 556, 610, 675, 739
CviAII CATG 5 cut(s) 160, 346, 454, 559, 919
CviQI GTAC 5 cut(s) 55, 556, 610, 675, 739
DdeI CTNAG 5 cut(s) 102, 461, 696, 744, 989
DpnI GATC 6 cut(s) 40, 119, 266, 350, 375, 833
DpnII GATC 6 cut(s) 38, 117, 264, 348, 373, 831
Eam1104I CTCTTC 3 cut(s) 555, 600, 847
EarI CTCTTC 3 cut(s) 555, 600, 847
Ecl136II GAGCTC 2 cut(s) 136, 632
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 2 cut(s) 138, 634
Eco53kI GAGCTC 2 cut(s) 136, 632
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 805
EcoICRI GAGCTC 2 cut(s) 136, 632
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 2 cut(s) 138, 634
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 5 cut(s) 163, 349, 457, 562, 922
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 159, 345, 453, 558, 918
FauI CCCGC 1 cut(s) 331
FauNDI CATATG 1 cut(s) 25
FbaI TGATCA 2 cut(s) 117, 831
Fnu4HI GCNGC 6 cut(s) 164, 458, 485, 531, 540, 930
FokI GGATG 4 cut(s) 289, 302, 533, 867
FriOI GRGCYC 2 cut(s) 138, 634
Fsp4HI GCNGC 6 cut(s) 164, 458, 485, 531, 540, 930
FspBI CTAG 3 cut(s) 147, 173, 585
GlaI GCGC 1 cut(s) 244
GluI GCNGC 6 cut(s) 164, 458, 485, 531, 540, 930
HaeIII GGCC 2 cut(s) 219, 314
HhaI GCGC 1 cut(s) 245
Hin1II CATG 5 cut(s) 163, 349, 457, 562, 922
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 2 cut(s) 686, 714
HinfI GANTC 7 cut(s) 17, 32, 176, 472, 510, 588, 844
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 4 cut(s) 271, 571, 655, 992
Hpy188III TCNNGA 5 cut(s) 36, 139, 386, 585, 635
Hpy8I GTNNAC 1 cut(s) 592
Hpy99I CGWCG 2 cut(s) 197, 387
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 7 cut(s) 4, 163, 224, 457, 487, 932, 955
HpyF10VI GCNNNNNNNGC 6 cut(s) 169, 205, 530, 536, 539, 545
HpyF3I CTNAG 5 cut(s) 102, 461, 696, 744, 989
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 5 cut(s) 163, 349, 457, 562, 922
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 2 cut(s) 117, 831
Kzo9I GATC 6 cut(s) 38, 117, 264, 348, 373, 831
LguI GCTCTTC 1 cut(s) 555
LpnPI CCDG 9 cut(s) 105, 201, 251, 272, 350, 600, 627, 643, 911
Lsp1109I GCAGC 5 cut(s) 175, 469, 471, 551, 916
LweI GCATC 5 cut(s) 311, 408, 496, 511, 542
MaeI CTAG 3 cut(s) 147, 173, 585
MaeII ACGT 1 cut(s) 382
MalI GATC 6 cut(s) 40, 119, 266, 350, 375, 833
MboI GATC 6 cut(s) 38, 117, 264, 348, 373, 831
MboII GAAGA 7 cut(s) 431, 542, 617, 788, 791, 833, 864
MhlI GDGCHC 3 cut(s) 138, 158, 634
MluCI AATT 3 cut(s) 580, 734, 810
MlyI GAGTC 4 cut(s) 41, 170, 466, 597
MnlI CCTC 7 cut(s) 195, 316, 456, 691, 785, 971, 998
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 1 cut(s) 755
MspA1I CMGCKG 4 cut(s) 286, 460, 695, 895
MspR9I CCNGG 1 cut(s) 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 6 cut(s) 169, 205, 530, 536, 539, 545
NdeI CATATG 1 cut(s) 25
NdeII GATC 6 cut(s) 38, 117, 264, 348, 373, 831
NlaIII CATG 5 cut(s) 163, 349, 457, 562, 922
NmeAIII GCCGAG 1 cut(s) 731
NspI RCATGY 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 3 cut(s) 17, 510, 844
PkrI GCNGC 6 cut(s) 165, 459, 486, 532, 541, 931
PleI GAGTC 4 cut(s) 40, 170, 466, 596
PpsI GAGTC 4 cut(s) 40, 170, 466, 596
Psp124BI GAGCTC 2 cut(s) 138, 634
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PsrI GAACNNNNNNTAC 2 cut(s) 722, 754
PvuII CAGCTG 3 cut(s) 286, 460, 695
RsaI GTAC 5 cut(s) 56, 557, 611, 676, 740
RsaNI GTAC 5 cut(s) 55, 556, 610, 675, 739
SacI GAGCTC 2 cut(s) 138, 634
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 1 cut(s) 755
SatI GCNGC 6 cut(s) 164, 458, 485, 531, 540, 930
Sau3AI GATC 6 cut(s) 38, 117, 264, 348, 373, 831
SchI GAGTC 4 cut(s) 41, 170, 466, 597
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 3 cut(s) 138, 158, 634
SfaNI GCATC 5 cut(s) 311, 408, 496, 511, 542
SmlI CTYRAG 2 cut(s) 137, 633
SmoI CTYRAG 2 cut(s) 137, 633
Sse9I AATT 3 cut(s) 580, 734, 810
SsiI CCGC 3 cut(s) 338, 531, 895
SspI AATATT 1 cut(s) 785
SspMI CTAG 3 cut(s) 147, 173, 585
SstI GAGCTC 2 cut(s) 138, 634
StyD4I CCNGG 1 cut(s) 613
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 1 cut(s) 385
TaqI TCGA 5 cut(s) 192, 351, 385, 499, 513
TasI AATT 3 cut(s) 580, 734, 810
TatI WGTACW 4 cut(s) 54, 555, 674, 738
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 3 cut(s) 17, 510, 844
Tru1I TTAA 1 cut(s) 755
Tru9I TTAA 1 cut(s) 755
TscAI CASTG 2 cut(s) 99, 245
TseI GCWGC 5 cut(s) 163, 457, 484, 539, 929
TspDTI ATGAA 6 cut(s) 306, 369, 432, 575, 638, 935
TspGWI ACGGA 2 cut(s) 439, 854
TspRI CASTG 2 cut(s) 99, 245
XbaI TCTAGA 1 cut(s) 584
XceI RCATGY 1 cut(s) 457
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 3 cut(s) 147, 173, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.