RLG00000017366

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017576
Physical Location & Seq
Reverse (-)
15775363 .. 15776349
987 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017366

Sequence Viewer

Length: 987 bp
ATGGAGTCATCATATGATGAGTCAAGATCACCCCACTTGAAGTACAAACCGAGCAAGTGGGACGAAAGCCAAGACAAGCCATTGGGGTCTAAGATGGCAGAACTGATCAAAACCAAGGCAGAGCTCAAGAAAGCTAGAGAGAGCACCATGCAGCTATGGCTAGACTCCAAGCCTCTCATCGACGAGCTTGAAATGCTGAAATCTGGCCTTGCAAGAGCTGAAAACCAGTGTGCCACGCCCAATACTATGATCTCCGAGCTGAAATCACAGCTCGATGCAACCCACGCATCCATCAAGGCCAAAAAGGAGGACGAACTAAACGCGAGAAACATGATCAATGAAACAAATCAGGCTTTGGATCAAACACGTCGAGAGATTGTAAGCATCAACTTGGAGACAAATGAAGAACGGAAAGCAATAGCAAGAATGACACAAGACATGCAACTGAGGAGACAGACTCTACGAACGCTGCATCTTACACTTCGAGCTGTAAGAATCGAAAAGGATGCTATTGCCGCATCAGCAGCAGAAGCTCTTCAGTACATGAACTATTCAGAAATGGATAATTCTACAGTCAACATCAGCCACGAAGAGTACCCTGGCTTGATGAAAAGAGCTCAAGATGAAAACTCTCTTTCAGACTGGCGTATTGTGGTTTGTACAGAACAGAAGCTTACAGCTGAGGCAAGCCGAGACAAAGCTTCGGCAAAACTGAACGAACTGTACTCTCAGCTAACATTAAGAGTAGGAGAAATCAAAGAAGAAGAATATTATGGAGGTGGGCAGACCCCGAGAATTGAGGACGAAGGCCAAATGATCACATCGGAGAATCAGAGGAGAGTATTGCCAAAGCCAACTCCAAGACATCCAAGACAACAGCGGAGAATAAGGCGTGAGAACTACATGAAGCTGGCTGCAAAAGTGAAACCATCTTATTTGCAACAAATAAAACTCTTTTTCGGAGGTGTTTGCCTCAGACCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

329

Amino Acids

37.8

Weight (kDa)

9.0

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 18 - 249 4.2e-13 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017576)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15570
prunus_persica Prupe.7G137300_v2.0.a1
pyrus_communis pycom02g13480
rosa_laevigata RLG00000017366
rosa_multiflora Rmu_sc0003419.1_g000005
rosa_roxburghii Rroxscaffold_2G00138690
rosa_rugosa Rorug02G0123800
rosa_samantha Rh2AG174000 Rh2BG181600 Rh2CG178900 Rh2DG180300
rosa_wichuraiana Rw2G013690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 323
AciI CCGC 2 cut(s) 516, 880
AclWI GGATC 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 5 cut(s) 44, 542, 596, 661, 725
AflIII ACRYGT 1 cut(s) 365
AgsI TTSAA 2 cut(s) 40, 191
AjiI CACGTC 1 cut(s) 368
AjnI CCWGG 1 cut(s) 598
Alw21I GWGCWC 3 cut(s) 126, 146, 619
Alw26I GTCTC 3 cut(s) 389, 445, 687
AlwI GGATC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 790
AoxI GGCC 3 cut(s) 205, 297, 808
ApeKI GCWGC 4 cut(s) 151, 469, 524, 914
Asp700I GAANNNNTTC 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 21
AvaI CYCGRG 1 cut(s) 790
BanII GRGCYC 2 cut(s) 126, 619
Bbv12I GWGCWC 3 cut(s) 126, 146, 619
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 4 cut(s) 163, 456, 536, 901
BccI CCATC 3 cut(s) 88, 299, 937
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BciT130I CCWGG 1 cut(s) 600
BclI TGATCA 3 cut(s) 105, 333, 816
BcoDI GTCTC 3 cut(s) 389, 445, 687
BfaI CTAG 2 cut(s) 135, 161
BfmI CTRYAG 1 cut(s) 570
BisI GCNGC 5 cut(s) 152, 470, 516, 525, 915
BlsI GCNGC 5 cut(s) 153, 471, 517, 526, 916
Bme1390I CCNGG 1 cut(s) 600
BmeT110I CYCGRG 1 cut(s) 790
BmgBI CACGTC 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 600
BmsI GCATC 6 cut(s) 265, 296, 393, 481, 496, 527
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu10I CCTNAGC 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 110, 603
BsaJI CCNNGG 2 cut(s) 114, 598
Bse1I ACTGG 2 cut(s) 226, 647
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 2 cut(s) 114, 598
BseGI GGATG 3 cut(s) 287, 511, 865
BseMII CTCAG 3 cut(s) 437, 672, 743
BseNI ACTGG 2 cut(s) 226, 647
BseRI GAGGAG 2 cut(s) 463, 850
BseXI GCAGC 4 cut(s) 163, 456, 536, 901
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 3 cut(s) 207, 299, 810
BsiHKAI GWGCWC 3 cut(s) 126, 146, 619
BsiHKCI CYCGRG 1 cut(s) 790
BslFI GGGAC 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 389, 445, 687
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 3 cut(s) 207, 299, 810
BsoBI CYCGRG 1 cut(s) 790
Bsp1286I GDGCHC 3 cut(s) 126, 146, 619
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 6 cut(s) 26, 105, 249, 333, 358, 816
BspACI CCGC 2 cut(s) 516, 880
BspANI GGCC 3 cut(s) 207, 299, 810
BspCNI CTCAG 4 cut(s) 438, 673, 742, 987
BspFNI CGCG 1 cut(s) 323
BspPI GGATC 1 cut(s) 366
BspQI GCTCTTC 1 cut(s) 540
BsrGI TGTACA 1 cut(s) 659
BsrI ACTGG 2 cut(s) 226, 647
BssECI CCNNGG 2 cut(s) 114, 598
BssMI GATC 6 cut(s) 26, 105, 249, 333, 358, 816
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 2 cut(s) 574, 723
Bst6I CTCTTC 2 cut(s) 540, 585
BstAUI TGTACA 1 cut(s) 659
BstC8I GCNNGC 2 cut(s) 688, 912
BstDEI CTNAG 5 cut(s) 90, 446, 681, 729, 974
BstF5I GGATG 3 cut(s) 287, 511, 865
BstFNI CGCG 1 cut(s) 323
BstKTI GATC 6 cut(s) 29, 108, 252, 336, 361, 819
BstMAI GTCTC 3 cut(s) 389, 445, 687
BstMBI GATC 6 cut(s) 26, 105, 249, 333, 358, 816
BstMWI GCNNNNNNNGC 7 cut(s) 157, 193, 284, 515, 521, 524, 530
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 598
BstSFI CTRYAG 1 cut(s) 570
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 4 cut(s) 163, 456, 536, 901
BsuRI GGCC 3 cut(s) 207, 299, 810
BtrI CACGTC 1 cut(s) 368
BtsCI GGATG 3 cut(s) 287, 511, 865
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 688, 912
Csp6I GTAC 5 cut(s) 43, 541, 595, 660, 724
CviAII CATG 5 cut(s) 148, 331, 439, 544, 904
CviQI GTAC 5 cut(s) 43, 541, 595, 660, 724
DdeI CTNAG 5 cut(s) 90, 446, 681, 729, 974
DpnI GATC 6 cut(s) 28, 107, 251, 335, 360, 818
DpnII GATC 6 cut(s) 26, 105, 249, 333, 358, 816
Eam1104I CTCTTC 2 cut(s) 540, 585
EarI CTCTTC 2 cut(s) 540, 585
Ecl136II GAGCTC 2 cut(s) 124, 617
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 126, 619
Eco53kI GAGCTC 2 cut(s) 124, 617
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 790
EcoICRI GAGCTC 2 cut(s) 124, 617
EcoRII CCWGG 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 126, 619
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 151, 334, 442, 547, 907
FaqI GGGAC 1 cut(s) 74
FatI CATG 5 cut(s) 147, 330, 438, 543, 903
FauNDI CATATG 1 cut(s) 13
FbaI TGATCA 3 cut(s) 105, 333, 816
Fnu4HI GCNGC 5 cut(s) 152, 470, 516, 525, 915
FokI GGATG 3 cut(s) 274, 518, 852
FriOI GRGCYC 2 cut(s) 126, 619
Fsp4HI GCNGC 5 cut(s) 152, 470, 516, 525, 915
FspBI CTAG 2 cut(s) 135, 161
GluI GCNGC 5 cut(s) 152, 470, 516, 525, 915
HaeIII GGCC 3 cut(s) 207, 299, 810
Hin1II CATG 5 cut(s) 151, 334, 442, 547, 907
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 2 cut(s) 671, 699
HinfI GANTC 6 cut(s) 5, 20, 164, 457, 495, 829
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 7 cut(s) 256, 556, 640, 826, 834, 962, 977
Hpy188III TCNNGA 4 cut(s) 24, 127, 371, 620
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 2 cut(s) 185, 372
HpyAV CCTTC 1 cut(s) 800
HpyCH4III ACNGT 2 cut(s) 574, 723
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 7 cut(s) 151, 212, 278, 442, 472, 917, 940
HpyF10VI GCNNNNNNNGC 7 cut(s) 157, 193, 284, 515, 521, 524, 530
HpyF3I CTNAG 5 cut(s) 90, 446, 681, 729, 974
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 5 cut(s) 151, 334, 442, 547, 907
Ksp22I TGATCA 3 cut(s) 105, 333, 816
Kzo9I GATC 6 cut(s) 26, 105, 249, 333, 358, 816
LguI GCTCTTC 1 cut(s) 540
LpnPI CCDG 7 cut(s) 189, 239, 335, 585, 612, 628, 896
Lsp1109I GCAGC 4 cut(s) 163, 456, 536, 901
LweI GCATC 6 cut(s) 265, 296, 393, 481, 496, 527
MaeI CTAG 2 cut(s) 135, 161
MaeII ACGT 1 cut(s) 367
MalI GATC 6 cut(s) 28, 107, 251, 335, 360, 818
MboI GATC 6 cut(s) 26, 105, 249, 333, 358, 816
MboII GAAGA 5 cut(s) 416, 527, 602, 773, 776
MhlI GDGCHC 3 cut(s) 126, 146, 619
MluCI AATT 2 cut(s) 565, 795
MlyI GAGTC 4 cut(s) 14, 29, 158, 451
MnlI CCTC 9 cut(s) 183, 301, 441, 676, 770, 793, 828, 956, 983
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 1 cut(s) 740
MspA1I CMGCKG 2 cut(s) 680, 880
MspR9I CCNGG 1 cut(s) 600
MvaI CCWGG 1 cut(s) 600
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 7 cut(s) 157, 193, 284, 515, 521, 524, 530
NdeI CATATG 1 cut(s) 13
NdeII GATC 6 cut(s) 26, 105, 249, 333, 358, 816
NlaIII CATG 5 cut(s) 151, 334, 442, 547, 907
NmeAIII GCCGAG 1 cut(s) 716
NspI RCATGY 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 495, 829
PkrI GCNGC 5 cut(s) 153, 471, 517, 526, 916
PleI GAGTC 4 cut(s) 13, 28, 158, 451
PpsI GAGTC 4 cut(s) 13, 28, 158, 451
Psp124BI GAGCTC 2 cut(s) 126, 619
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PsrI GAACNNNNNNTAC 2 cut(s) 707, 739
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 5 cut(s) 44, 542, 596, 661, 725
RsaNI GTAC 5 cut(s) 43, 541, 595, 660, 724
SacI GAGCTC 2 cut(s) 126, 619
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 1 cut(s) 740
SatI GCNGC 5 cut(s) 152, 470, 516, 525, 915
Sau3AI GATC 6 cut(s) 26, 105, 249, 333, 358, 816
SchI GAGTC 4 cut(s) 14, 29, 158, 451
ScrFI CCNGG 1 cut(s) 600
SduI GDGCHC 3 cut(s) 126, 146, 619
SfaNI GCATC 6 cut(s) 265, 296, 393, 481, 496, 527
SfcI CTRYAG 1 cut(s) 570
SmlI CTYRAG 2 cut(s) 125, 618
SmoI CTYRAG 2 cut(s) 125, 618
Sse9I AATT 2 cut(s) 565, 795
SsiI CCGC 2 cut(s) 516, 880
SspI AATATT 1 cut(s) 770
SspMI CTAG 2 cut(s) 135, 161
SstI GAGCTC 2 cut(s) 126, 619
StyD4I CCNGG 1 cut(s) 598
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 574, 723
TaiI ACGT 1 cut(s) 370
TaqI TCGA 5 cut(s) 180, 273, 370, 484, 498
TasI AATT 2 cut(s) 565, 795
TatI WGTACW 4 cut(s) 42, 540, 659, 723
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 2 cut(s) 495, 829
Tru1I TTAA 1 cut(s) 740
Tru9I TTAA 1 cut(s) 740
TscAI CASTG 1 cut(s) 233
TseI GCWGC 4 cut(s) 151, 469, 524, 914
TspDTI ATGAA 6 cut(s) 354, 417, 560, 623, 639, 920
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 1 cut(s) 233
XceI RCATGY 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 2 cut(s) 135, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.