FvH4_1g17350

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016735
Physical Location & Seq
Reverse (-)
10031147 .. 10033700
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17350.t1

Sequence Viewer

Length: 984 bp
ATGCCAGCAAGCAGGCAATTTTCTCGGATAGACACTTCAGAACTGAAAGATCAGATTGTGAGGAGGGTTGGGGGCCCAAAAGCGGATAAATATTTCAATCTTCTCACAAGATACTTGAGTCTCAAGATTCACAAACATGATTTTGACAGGCTCTGCATTGAAACAATAGGGAAAGAAAATGTCTGTCTTCATAATCATCTCATCCGTTCCATACTGAGAAATGCAAGCCTCTCAAAGACTCCCCCATCAAGAAAAAGCAGCTTTGGTTCTCTTAATGTAAAAGTGGCAAATGGATATCAAAAAAGTAGTCTTCAATTGTTAGGCAGAGACTTCCCCAGATCGCCTAAAAAAGAGAGGACTCCAAATCTCCGTGATCGGAGGGCAAAGAATCGCTTAACCAGTTCTGAGGCTCCTATTGCGAAGATTCAAGTACAAGAAAGGGCAACTGAGCTGCTTTCTTTGGGTGGCAGGCCCCCAGGCTCAGACGAAGACGGGGAAGAGGTTGATCAGGCTGCTGACAGTCCAAGCATCCACTGTATAAGACCTCTTTCTGCTCCTCTTGGAATCCCACTAAACACCGGAAGGGCAAAAAAACTGTTAATAAAAGGATCAGCCCCTGCTAGTTACAACGAGACTTGTCTGGACAGCGGTGAGTTACCTGATACTAGTTCTTTAAGGAAGAGGTTGAAGCAAAAGCTGGAAATGGAGGGAATGGAAATGTCCGAGGATTGTGCCAACTTGTTGAATAATGGTCTTGATGCTTTCTTAAAGAGATTAATAAAGCCTTGTTTGGAATTAGCTGGTTCAAGGTGTCCGGACAAACACATAGATAGAGAACATAGCCATGACATGAGAAACTTACAAAGACCAAGCAGGCCTTATTCAGCATCTGTACTAGACTTCCGGACTGCACTTGATTTGAACCCTCAATTACTTGGAGAAGATTGGCCAACAAAACTTGAGAAGGTATGCTTGCATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

328

Amino Acids

36.64

Weight (kDa)

9.41

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 6 - 266 2.9e-54 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016735)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17350 FvH4_1g17350
prunus_persica Prupe.6G223300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107521
rosa_laevigata RLG00000017588
rosa_multiflora Rmu_sc0001065.1_g000016
rosa_roxburghii Rroxscaffold_2G00136220
rosa_rugosa Rorug02G0144600 Rorug02G0144700
rosa_samantha Rh2AG194500 Rh2BG207200 Rh2CG199700 Rh2DG201800
rosa_wichuraiana Rw2G015410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 814, 903
AciI CCGC 2 cut(s) 83, 648
AclWI GGATC 1 cut(s) 616
AcoI YGGCCR 1 cut(s) 947
AcuI CTGAAG 1 cut(s) 21
AfaI GTAC 2 cut(s) 432, 894
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 8 cut(s) 97, 161, 314, 428, 688, 745, 807, 922
AhlI ACTAGT 1 cut(s) 665
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 4 cut(s) 261, 451, 697, 800
AluI AGCT 4 cut(s) 261, 451, 697, 800
Alw26I GTCTC 3 cut(s) 125, 321, 626
AlwI GGATC 1 cut(s) 616
AlwNI CAGNNNCTG 3 cut(s) 153, 617, 890
Aor13HI TCCGGA 2 cut(s) 814, 903
AoxI GGCC 4 cut(s) 73, 470, 875, 947
ApaI GGGCCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 258, 451, 512
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AseI ATTAAT 1 cut(s) 776
AspS9I GGNCC 3 cut(s) 73, 74, 471
AsuHPI GGTGA 1 cut(s) 662
BaeGI GKGCMC 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
BalI TGGCCA 1 cut(s) 949
BanII GRGCYC 1 cut(s) 77
BbsI GAAGAC 3 cut(s) 179, 302, 495
BbvI GCAGC 3 cut(s) 270, 438, 499
BccI CCATC 1 cut(s) 253
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 713, 747
BciT130I CCWGG 1 cut(s) 477
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 3 cut(s) 125, 321, 626
BcuI ACTAGT 1 cut(s) 665
BfaI CTAG 3 cut(s) 621, 666, 896
BisI GCNGC 3 cut(s) 259, 452, 513
BlsI GCNGC 3 cut(s) 260, 453, 514
Bme1390I CCNGG 1 cut(s) 477
BmgT120I GGNCC 3 cut(s) 73, 74, 471
BmiI GGNNCC 4 cut(s) 74, 75, 411, 473
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 3 cut(s) 537, 748, 896
BpiI GAAGAC 3 cut(s) 179, 302, 495
BpuEI CTTGAG 3 cut(s) 107, 136, 980
BsaJI CCNNGG 2 cut(s) 475, 723
BsaWI WCCGGW 3 cut(s) 578, 814, 903
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 399
BseAI TCCGGA 2 cut(s) 814, 903
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 475, 723
BseGI GGATG 2 cut(s) 201, 528
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 4 cut(s) 206, 396, 438, 495
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 2 cut(s) 76, 546
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 3 cut(s) 270, 438, 499
BsgI GTGCAG 1 cut(s) 894
BshFI GGCC 4 cut(s) 75, 472, 877, 949
BsiSI CCGG 3 cut(s) 579, 815, 904
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 3 cut(s) 125, 321, 626
BsnI GGCC 4 cut(s) 75, 472, 877, 949
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 77
Bsp13I TCCGGA 2 cut(s) 814, 903
Bsp143I GATC 5 cut(s) 49, 338, 373, 505, 608
BspACI CCGC 2 cut(s) 83, 648
BspANI GGCC 4 cut(s) 75, 472, 877, 949
BspCNI CTCAG 4 cut(s) 207, 397, 439, 494
BspEI TCCGGA 2 cut(s) 814, 903
BspLI GGNNCC 4 cut(s) 74, 75, 411, 473
BspPI GGATC 1 cut(s) 616
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 2 cut(s) 475, 723
BssMI GATC 5 cut(s) 49, 338, 373, 505, 608
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 3 cut(s) 521, 536, 597
Bst6I CTCTTC 2 cut(s) 492, 674
BstC8I GCNNGC 8 cut(s) 6, 10, 14, 226, 470, 875, 974, 978
BstDEI CTNAG 4 cut(s) 215, 405, 447, 481
BstF5I GGATG 2 cut(s) 201, 528
BstKTI GATC 5 cut(s) 52, 341, 376, 508, 611
BstMAI GTCTC 3 cut(s) 125, 321, 626
BstMBI GATC 5 cut(s) 49, 338, 373, 505, 608
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 270, 438, 499
BstV2I GAAGAC 3 cut(s) 179, 302, 495
BsuRI GGCC 4 cut(s) 75, 472, 877, 949
BtsCI GGATG 2 cut(s) 201, 528
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 8 cut(s) 6, 10, 14, 226, 470, 875, 974, 978
CaiI CAGNNNCTG 3 cut(s) 153, 617, 890
Cfr13I GGNCC 3 cut(s) 73, 74, 471
Csp6I GTAC 2 cut(s) 431, 893
CviAII CATG 4 cut(s) 137, 845, 850, 977
CviQI GTAC 2 cut(s) 431, 893
DdeI CTNAG 4 cut(s) 215, 405, 447, 481
DpnI GATC 5 cut(s) 51, 340, 375, 507, 610
DpnII GATC 5 cut(s) 49, 338, 373, 505, 608
EaeI YGGCCR 1 cut(s) 947
Eam1104I CTCTTC 2 cut(s) 492, 674
EarI CTCTTC 2 cut(s) 492, 674
Eco147I AGGCCT 1 cut(s) 877
Eco24I GRGCYC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 21
EcoO109I RGGNCCY 2 cut(s) 73, 471
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 982
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 4 cut(s) 140, 848, 853, 980
FalI AAGNNNNNCTT 5 cut(s) 377, 409, 862, 894, 956
FatI CATG 4 cut(s) 136, 844, 849, 976
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 3 cut(s) 259, 452, 513
FokI GGATG 2 cut(s) 188, 515
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 259, 452, 513
FspBI CTAG 3 cut(s) 621, 666, 896
GluI GCNGC 3 cut(s) 259, 452, 513
HaeIII GGCC 4 cut(s) 75, 472, 877, 949
HapII CCGG 3 cut(s) 579, 815, 904
Hin1II CATG 4 cut(s) 140, 848, 853, 980
HinfI GANTC 7 cut(s) 118, 127, 238, 358, 388, 424, 564
HpaII CCGG 3 cut(s) 579, 815, 904
HphI GGTGA 1 cut(s) 662
Hpy188I TCNGA 7 cut(s) 27, 40, 54, 378, 406, 484, 724
Hpy188III TCNNGA 6 cut(s) 124, 249, 641, 755, 815, 904
HpyAV CCTTC 2 cut(s) 576, 958
HpyCH4III ACNGT 3 cut(s) 521, 536, 597
HpyCH4V TGCA 5 cut(s) 156, 224, 911, 976, 980
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 4 cut(s) 215, 405, 447, 481
Hsp92II CATG 4 cut(s) 140, 848, 853, 980
Kpn2I TCCGGA 2 cut(s) 814, 903
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 5 cut(s) 49, 338, 373, 505, 608
LmnI GCTCC 2 cut(s) 415, 559
Lsp1109I GCAGC 3 cut(s) 270, 438, 499
LweI GCATC 3 cut(s) 537, 748, 896
MaeI CTAG 3 cut(s) 621, 666, 896
MaeIII GTNAC 2 cut(s) 623, 654
MalI GATC 5 cut(s) 51, 340, 375, 507, 610
MboI GATC 5 cut(s) 49, 338, 373, 505, 608
MboII GAAGA 8 cut(s) 92, 179, 302, 433, 500, 509, 691, 953
MfeI CAATTG 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 949
MluCI AATT 4 cut(s) 17, 314, 794, 929
MluNI TGGCCA 1 cut(s) 949
MlyI GAGTC 3 cut(s) 127, 232, 352
Mox20I TGGCCA 1 cut(s) 949
Mph1103I ATGCAT 1 cut(s) 982
MroI TCCGGA 2 cut(s) 814, 903
MscI TGGCCA 1 cut(s) 949
MseI TTAA 6 cut(s) 273, 395, 599, 674, 767, 776
MslI CAYNNNNRTG 2 cut(s) 135, 843
Msp20I TGGCCA 1 cut(s) 949
MspA1I CMGCKG 1 cut(s) 648
MspI CCGG 3 cut(s) 579, 815, 904
MspR9I CCNGG 1 cut(s) 477
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 416
NdeII GATC 5 cut(s) 49, 338, 373, 505, 608
NlaIII CATG 4 cut(s) 140, 848, 853, 980
NlaIV GGNNCC 4 cut(s) 74, 75, 411, 473
NsiI ATGCAT 1 cut(s) 982
NspI RCATGY 1 cut(s) 980
PaeI GCATGC 1 cut(s) 980
PceI AGGCCT 1 cut(s) 877
PfeI GAWTC 4 cut(s) 127, 388, 424, 564
PkrI GCNGC 3 cut(s) 260, 453, 514
PleI GAGTC 3 cut(s) 126, 232, 352
PpsI GAGTC 3 cut(s) 126, 232, 352
PshBI ATTAAT 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 4 cut(s) 74, 75, 411, 473
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 3 cut(s) 73, 74, 471
PstNI CAGNNNCTG 3 cut(s) 153, 617, 890
RsaI GTAC 2 cut(s) 432, 894
RsaNI GTAC 2 cut(s) 431, 893
RseI CAYNNNNRTG 2 cut(s) 135, 843
SaqAI TTAA 6 cut(s) 273, 395, 599, 674, 767, 776
SatI GCNGC 3 cut(s) 259, 452, 513
Sau3AI GATC 5 cut(s) 49, 338, 373, 505, 608
Sau96I GGNCC 3 cut(s) 73, 74, 471
SchI GAGTC 3 cut(s) 127, 232, 352
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 3 cut(s) 537, 748, 896
SmiMI CAYNNNNRTG 2 cut(s) 135, 843
SmlI CTYRAG 3 cut(s) 115, 122, 959
SmoI CTYRAG 3 cut(s) 115, 122, 959
SpeI ACTAGT 1 cut(s) 665
SphI GCATGC 1 cut(s) 980
Sse9I AATT 4 cut(s) 17, 314, 794, 929
SseBI AGGCCT 1 cut(s) 877
SsiI CCGC 2 cut(s) 83, 648
SspI AATATT 1 cut(s) 92
SspMI CTAG 3 cut(s) 621, 666, 896
StuI AGGCCT 1 cut(s) 877
StyD4I CCNGG 1 cut(s) 475
TaaI ACNGT 3 cut(s) 521, 536, 597
TasI AATT 4 cut(s) 17, 314, 794, 929
TatI WGTACW 2 cut(s) 430, 892
TfiI GAWTC 4 cut(s) 127, 388, 424, 564
Tru1I TTAA 6 cut(s) 273, 395, 599, 674, 767, 776
Tru9I TTAA 6 cut(s) 273, 395, 599, 674, 767, 776
TscAI CASTG 1 cut(s) 539
TseI GCWGC 3 cut(s) 258, 451, 512
TspDTI ATGAA 1 cut(s) 179
TspGWI ACGGA 2 cut(s) 194, 359
TspRI CASTG 1 cut(s) 539
VspI ATTAAT 1 cut(s) 776
XceI RCATGY 1 cut(s) 980
XspI CTAG 3 cut(s) 621, 666, 896
Zsp2I ATGCAT 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.