RLG00000017588

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016735
Physical Location & Seq
Reverse (-)
18554634 .. 18557091
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017588

Sequence Viewer

Length: 1092 bp
ATGTCAACTCATTGCATGATGTCCGTAGTGTATGAATTAAAGGAAGAAACGGAAGTGAAATTGTGTTTCACAGTATCAAAATTAAGTCAGGAATTTGAAACCAGAATGCCAGCAAGTAGGCAATTTTCTCGGATAGACACGTCAGAACTAAAAGATCAGATTGAGAGGAAGGTTGGGAGCCTGAAGGCAGAAAAGTATTTCAGTCTTCTCACAGGATACTTGAGTCTCAAGATTCGCAAATCCGATTTTGATAGGCTCTGCATTGAAACAATAGGGAAAGAAAATGTCTGTCTTCATAATCATCTTATCCGTTCCATACTGAGAAATGCAAGCCTTTCGAAGACTCCCCCGTCGAGCAAAAGCAGCTTTGCAGGTTCTCTTAGTGTAAAAGTGGCAAATGGATATCAAAAAAGTAGTCTTCAATTGTTATGCAGAGATTTCCCCAAATCACCTAAGAAAGAGAGGACTCCCAATCTTCGTGATCGAAGGGCAAGGAATCGTTTGACCTATTCTGAGGCTCCTATTGCAAAACTTCAAGTACAAGAAAGGGCAACCGAGCTGCTTTCTTTGGGGGGCAGACCCCCCGGCTCAGATGAAGATGGGGAAGAGGTTGATCAGGCTGCTGAATGTCCAAGCATCCACAGTATAAGACCTCTTTGTGCTCCTCTCGGAATCCCAATATGCACTGGAAGGACAAAAAAACAGTTAATCAAAGGATCAGCACCTGCTATTTACAACGAGACTTGTCTGAACAGTGGGGGGTTACCTGATACTAGTTCTTTAAGAAAGAGATTGAAGCAAAAGTTGGAGATGGAGGGAATGGAACTGTCCGAGGATTGTGCCAACTTGTTGAATAATGGACTTGATGTTTTCTTAAAGAGATTAATAAAGCCCTGTTTGGATTTAGCTGGTTCAAGGTCTAAGGACAGACACATAGATAGAGAACACAGCGATGATATGAGAATCGAACAAAGACCAAGCAGGCCTTATTCAGCATCTGTACTAGACTTTCGGGCTGCGATGGATTTGAACCCTCAAATACTTGGAGAAGATTGGCCAACAAAACTTGAGAAGGTTTGCTTGCACGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

364

Amino Acids

40.81

Weight (kDa)

8.98

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 41 - 303 3.3e-51 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016735)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17350 FvH4_1g17350
prunus_persica Prupe.6G223300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0107521
rosa_laevigata RLG00000017588
rosa_multiflora Rmu_sc0001065.1_g000016
rosa_roxburghii Rroxscaffold_2G00136220
rosa_rugosa Rorug02G0144600 Rorug02G0144700
rosa_samantha Rh2AG194500 Rh2BG207200 Rh2CG199700 Rh2DG201800
rosa_wichuraiana Rw2G015410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 733
AasI GACNNNNNNGTC 1 cut(s) 349
Acc36I ACCTGC 2 cut(s) 362, 733
AclWI GGATC 1 cut(s) 724
AcoI YGGCCR 1 cut(s) 1055
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 540, 1002
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 8 cut(s) 98, 266, 422, 536, 796, 853, 915, 1030
AhlI ACTAGT 1 cut(s) 773
AjiI CACGTC 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 3 cut(s) 366, 559, 908
AluI AGCT 3 cut(s) 366, 559, 908
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 2 cut(s) 230, 734
AlwI GGATC 1 cut(s) 724
AlwNI CAGNNNCTG 2 cut(s) 725, 998
AoxI GGCC 2 cut(s) 983, 1055
ApeKI GCWGC 4 cut(s) 363, 559, 620, 1016
ApoI RAATTY 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AseI ATTAAT 1 cut(s) 884
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 1 cut(s) 441
AsuII TTCGAA 1 cut(s) 338
BaeI ACNNNNGTAYC 2 cut(s) 208, 241
BalI TGGCCA 1 cut(s) 1057
BbsI GAAGAC 4 cut(s) 197, 284, 347, 410
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 4 cut(s) 375, 546, 607, 1003
BccI CCATC 3 cut(s) 593, 805, 1015
BcgI CGANNNNNNTGC 6 cut(s) 110, 144, 318, 352, 821, 855
BciVI GTATCC 1 cut(s) 209
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 2 cut(s) 230, 734
BcuI ACTAGT 1 cut(s) 773
BfaI CTAG 2 cut(s) 774, 1004
BfuAI ACCTGC 2 cut(s) 362, 733
BfuI GTATCC 1 cut(s) 209
BisI GCNGC 4 cut(s) 364, 560, 621, 1017
BlsI GCNGC 4 cut(s) 365, 561, 622, 1018
Bme1390I CCNGG 1 cut(s) 585
BmgBI CACGTC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 179, 519
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 2 cut(s) 645, 1004
BpiI GAAGAC 4 cut(s) 197, 284, 347, 410
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 3 cut(s) 212, 241, 1088
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 2 cut(s) 583, 831
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 583, 831
BseGI GGATG 1 cut(s) 636
BseMI GCAATG 1 cut(s) 10
BseMII CTCAG 3 cut(s) 311, 504, 603
BseNI ACTGG 1 cut(s) 691
BseRI GAGGAG 1 cut(s) 654
BseXI GCAGC 4 cut(s) 375, 546, 607, 1003
BshFI GGCC 2 cut(s) 985, 1057
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 1 cut(s) 585
BsmAI GTCTC 2 cut(s) 230, 734
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 2 cut(s) 985, 1057
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 4 cut(s) 154, 481, 613, 716
BspANI GGCC 2 cut(s) 985, 1057
BspCNI CTCAG 3 cut(s) 312, 505, 602
BspLI GGNNCC 2 cut(s) 179, 519
BspMI ACCTGC 2 cut(s) 362, 733
BspPI GGATC 1 cut(s) 724
BspT104I TTCGAA 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 583, 831
BssMI GATC 4 cut(s) 154, 481, 613, 716
Bst4CI ACNGT 5 cut(s) 73, 644, 705, 755, 828
Bst6I CTCTTC 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 5 cut(s) 111, 331, 983, 1082, 1086
BstDEI CTNAG 6 cut(s) 320, 380, 453, 513, 589, 921
BstEII GGTNACC 1 cut(s) 762
BstF5I GGATG 1 cut(s) 636
BstKTI GATC 4 cut(s) 157, 484, 616, 719
BstMAI GTCTC 2 cut(s) 230, 734
BstMBI GATC 4 cut(s) 154, 481, 613, 716
BstMWI GCNNNNNNNGC 2 cut(s) 363, 524
BstPI GGTNACC 1 cut(s) 762
BstSCI CCNGG 1 cut(s) 583
BstV1I GCAGC 4 cut(s) 375, 546, 607, 1003
BstV2I GAAGAC 4 cut(s) 197, 284, 347, 410
BsuI GTATCC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 985, 1057
BtgZI GCGATG 2 cut(s) 966, 1034
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 684, 760
BveI ACCTGC 2 cut(s) 362, 733
Cac8I GCNNGC 5 cut(s) 111, 331, 983, 1082, 1086
CaiI CAGNNNCTG 2 cut(s) 725, 998
Csp6I GTAC 2 cut(s) 539, 1001
CviAII CATG 1 cut(s) 16
CviQI GTAC 2 cut(s) 539, 1001
DdeI CTNAG 6 cut(s) 320, 380, 453, 513, 589, 921
DpnI GATC 4 cut(s) 156, 483, 615, 718
DpnII GATC 4 cut(s) 154, 481, 613, 716
DrdI GACNNNNNNGTC 1 cut(s) 349
DseDI GACNNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 1055
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 985
Eco32I GATATC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 762
EcoO65I GGTNACC 1 cut(s) 762
EcoRV GATATC 1 cut(s) 404
FaeI CATG 1 cut(s) 19
FalI AAGNNNNNCTT 3 cut(s) 970, 1002, 1064
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 4 cut(s) 364, 560, 621, 1017
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 4 cut(s) 364, 560, 621, 1017
FspBI CTAG 2 cut(s) 774, 1004
GluI GCNGC 4 cut(s) 364, 560, 621, 1017
HaeIII GGCC 2 cut(s) 985, 1057
HapII CCGG 1 cut(s) 585
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 7 cut(s) 223, 232, 343, 466, 496, 672, 963
HpaII CCGG 1 cut(s) 585
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 9 cut(s) 132, 145, 159, 244, 514, 592, 671, 750, 832
Hpy188III TCNNGA 3 cut(s) 89, 229, 479
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 355
HpyAV CCTTC 5 cut(s) 163, 178, 480, 684, 1066
HpyCH4III ACNGT 5 cut(s) 73, 644, 705, 755, 828
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 8 cut(s) 15, 261, 329, 371, 432, 527, 684, 1084
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 524
HpyF3I CTNAG 6 cut(s) 320, 380, 453, 513, 589, 921
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 4 cut(s) 154, 481, 613, 716
LmnI GCTCC 3 cut(s) 177, 523, 667
Lsp1109I GCAGC 4 cut(s) 375, 546, 607, 1003
LweI GCATC 2 cut(s) 645, 1004
MaeI CTAG 2 cut(s) 774, 1004
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 762
MalI GATC 4 cut(s) 156, 483, 615, 718
MboI GATC 4 cut(s) 154, 481, 613, 716
MboII GAAGA 9 cut(s) 56, 197, 284, 352, 410, 467, 608, 617, 1061
MfeI CAATTG 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 1 cut(s) 1057
MluCI AATT 6 cut(s) 35, 59, 80, 92, 122, 422
MluNI TGGCCA 1 cut(s) 1057
MlyI GAGTC 3 cut(s) 232, 337, 460
MmeI TCCRAC 1 cut(s) 786
MnlI CCTC 9 cut(s) 159, 456, 508, 601, 663, 675, 808, 826, 1044
Mox20I TGGCCA 1 cut(s) 1057
MscI TGGCCA 1 cut(s) 1057
MseI TTAA 6 cut(s) 38, 83, 707, 782, 875, 884
MslI CAYNNNNRTG 1 cut(s) 951
Msp20I TGGCCA 1 cut(s) 1057
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 1 cut(s) 585
MunI CAATTG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 363, 524
NciI CCSGG 1 cut(s) 585
NdeII GATC 4 cut(s) 154, 481, 613, 716
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 179, 519
NspV TTCGAA 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 733
PceI AGGCCT 1 cut(s) 985
PctI GAATGC 1 cut(s) 111
PfeI GAWTC 4 cut(s) 232, 496, 672, 963
PkrI GCNGC 4 cut(s) 365, 561, 622, 1018
PleI GAGTC 3 cut(s) 231, 337, 460
PpsI GAGTC 3 cut(s) 231, 337, 460
PshBI ATTAAT 1 cut(s) 884
PspEI GGTNACC 1 cut(s) 762
PspN4I GGNNCC 2 cut(s) 179, 519
PstNI CAGNNNCTG 2 cut(s) 725, 998
RsaI GTAC 2 cut(s) 540, 1002
RsaNI GTAC 2 cut(s) 539, 1001
RseI CAYNNNNRTG 1 cut(s) 951
SaqAI TTAA 6 cut(s) 38, 83, 707, 782, 875, 884
SatI GCNGC 4 cut(s) 364, 560, 621, 1017
Sau3AI GATC 4 cut(s) 154, 481, 613, 716
SchI GAGTC 3 cut(s) 232, 337, 460
ScrFI CCNGG 1 cut(s) 585
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 2 cut(s) 645, 1004
SfuI TTCGAA 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 3 cut(s) 220, 227, 1067
SmoI CTYRAG 3 cut(s) 220, 227, 1067
SpeI ACTAGT 1 cut(s) 773
Sse9I AATT 6 cut(s) 35, 59, 80, 92, 122, 422
SseBI AGGCCT 1 cut(s) 985
SspMI CTAG 2 cut(s) 774, 1004
StuI AGGCCT 1 cut(s) 985
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 5 cut(s) 73, 644, 705, 755, 828
TaiI ACGT 1 cut(s) 143
TaqI TCGA 4 cut(s) 338, 353, 484, 966
TasI AATT 6 cut(s) 35, 59, 80, 92, 122, 422
TatI WGTACW 2 cut(s) 538, 1000
TfiI GAWTC 4 cut(s) 232, 496, 672, 963
Tru1I TTAA 6 cut(s) 38, 83, 707, 782, 875, 884
Tru9I TTAA 6 cut(s) 38, 83, 707, 782, 875, 884
TscAI CASTG 2 cut(s) 691, 760
TseI GCWGC 4 cut(s) 363, 559, 620, 1016
TspDTI ATGAA 3 cut(s) 48, 284, 609
TspGWI ACGGA 3 cut(s) 13, 65, 299
TspRI CASTG 2 cut(s) 691, 760
VspI ATTAAT 1 cut(s) 884
XapI RAATTY 1 cut(s) 92
XspI CTAG 2 cut(s) 774, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.