Transcriptional regulator of RNA polII, SAGA, subunit
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g17350 FvH4_1g17350 |
| prunus_persica | Prupe.6G223300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0107521 |
| rosa_laevigata | RLG00000017588 |
| rosa_multiflora | Rmu_sc0001065.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00136220 |
| rosa_rugosa | Rorug02G0144600 Rorug02G0144700 |
| rosa_samantha | Rh2AG194500 Rh2BG207200 Rh2CG199700 Rh2DG201800 |
| rosa_wichuraiana | Rw2G015410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 962 |
| Acc36I | ACCTGC | 2 cut(s) | 372, 661 |
| AccII | CGCG | 1 cut(s) | 375 |
| AciI | CCGC | 2 cut(s) | 83, 402 |
| AclWI | GGATC | 1 cut(s) | 652 |
| AcoI | YGGCCR | 2 cut(s) | 399, 1004 |
| AcsI | RAATTY | 1 cut(s) | 610 |
| AfaI | GTAC | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 82, 353, 408 |
| AgsI | TTSAA | 9 cut(s) | 210, 234, 317, 464, 781, 843, 891, 979, 1019 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 512 |
| AhlI | ACTAGT | 1 cut(s) | 701 |
| AjnI | CCWGG | 2 cut(s) | 929, 960 |
| AleI | CACNNNNGTG | 1 cut(s) | 432 |
| AluBI | AGCT | 6 cut(s) | 50, 487, 590, 631, 691, 836 |
| AluI | AGCT | 6 cut(s) | 50, 487, 590, 631, 691, 836 |
| Alw26I | GTCTC | 3 cut(s) | 520, 852, 916 |
| AlwI | GGATC | 1 cut(s) | 652 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 653 |
| AoxI | GGCC | 5 cut(s) | 399, 410, 787, 932, 1004 |
| ApeKI | GCWGC | 2 cut(s) | 487, 548 |
| ApoI | RAATTY | 1 cut(s) | 610 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 295, 327 |
| AseI | ATTAAT | 1 cut(s) | 812 |
| AsiSI | GCGATCGC | 1 cut(s) | 379 |
| AspS9I | GGNCC | 3 cut(s) | 446, 650, 933 |
| AsuHPI | GGTGA | 1 cut(s) | 698 |
| AvaII | GGWCC | 2 cut(s) | 446, 650 |
| AxyI | CCTNAGG | 1 cut(s) | 414 |
| BalI | TGGCCA | 1 cut(s) | 1006 |
| BanII | GRGCYC | 1 cut(s) | 581 |
| BbsI | GAAGAC | 2 cut(s) | 179, 305 |
| BbvI | GCAGC | 2 cut(s) | 474, 535 |
| BccI | CCATC | 3 cut(s) | 386, 521, 733 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5, 39 |
| BciT130I | CCWGG | 2 cut(s) | 931, 962 |
| BclI | TGATCA | 1 cut(s) | 541 |
| BcoDI | GTCTC | 3 cut(s) | 520, 852, 916 |
| BcuI | ACTAGT | 1 cut(s) | 701 |
| BfaI | CTAG | 1 cut(s) | 702 |
| BfuAI | ACCTGC | 2 cut(s) | 372, 661 |
| BisI | GCNGC | 3 cut(s) | 402, 488, 549 |
| BlsI | GCNGC | 3 cut(s) | 403, 489, 550 |
| BmcAI | AGTACT | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 2 cut(s) | 931, 962 |
| Bme18I | GGWCC | 2 cut(s) | 446, 650 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 512 |
| BmgT120I | GGNCC | 3 cut(s) | 446, 650, 933 |
| BmiI | GGNNCC | 2 cut(s) | 74, 447 |
| BmrFI | CCNGG | 2 cut(s) | 931, 962 |
| BmrI | ACTGGG | 1 cut(s) | 930 |
| BmsI | GCATC | 3 cut(s) | 609, 888, 953 |
| BmuI | ACTGGG | 1 cut(s) | 930 |
| BoxI | GACNNNNGTC | 1 cut(s) | 672 |
| BpiI | GAAGAC | 2 cut(s) | 179, 305 |
| BpuEI | CTTGAG | 1 cut(s) | 812 |
| BsaI | GGTCTC | 2 cut(s) | 852, 916 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 716, 746 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 82, 353, 408 |
| Bse1I | ACTGG | 2 cut(s) | 905, 936 |
| Bse21I | CCTNAGG | 1 cut(s) | 414 |
| Bse3DI | GCAATG | 3 cut(s) | 156, 261, 975 |
| BseBI | CCWGG | 2 cut(s) | 931, 962 |
| BseGI | GGATG | 3 cut(s) | 201, 302, 903 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 82, 353, 408 |
| BseMI | GCAATG | 3 cut(s) | 156, 261, 975 |
| BseMII | CTCAG | 4 cut(s) | 65, 266, 428, 771 |
| BseNI | ACTGG | 2 cut(s) | 905, 936 |
| BseRI | GAGGAG | 1 cut(s) | 582 |
| BseXI | GCAGC | 2 cut(s) | 474, 535 |
| Bsh1236I | CGCG | 1 cut(s) | 375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 379 |
| BshFI | GGCC | 5 cut(s) | 401, 412, 789, 934, 1006 |
| BsiEI | CGRYCG | 1 cut(s) | 379 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 82, 353, 408 |
| BsmAI | GTCTC | 3 cut(s) | 520, 852, 916 |
| BsmI | GAATGC | 1 cut(s) | 564 |
| BsnI | GGCC | 5 cut(s) | 401, 412, 789, 934, 1006 |
| Bso31I | GGTCTC | 2 cut(s) | 852, 916 |
| Bsp1286I | GDGCHC | 1 cut(s) | 581 |
| Bsp143I | GATC | 4 cut(s) | 376, 541, 644, 865 |
| Bsp68I | TCGCGA | 1 cut(s) | 375 |
| BspACI | CCGC | 2 cut(s) | 83, 402 |
| BspANI | GGCC | 5 cut(s) | 401, 412, 789, 934, 1006 |
| BspCNI | CTCAG | 4 cut(s) | 64, 267, 427, 770 |
| BspFNI | CGCG | 1 cut(s) | 375 |
| BspLI | GGNNCC | 2 cut(s) | 74, 447 |
| BspMI | ACCTGC | 2 cut(s) | 372, 661 |
| BspPI | GGATC | 1 cut(s) | 652 |
| BspTNI | GGTCTC | 2 cut(s) | 852, 916 |
| BsrDI | GCAATG | 3 cut(s) | 156, 261, 975 |
| BsrI | ACTGG | 2 cut(s) | 905, 936 |
| BssMI | GATC | 4 cut(s) | 376, 541, 644, 865 |
| Bst2UI | CCWGG | 2 cut(s) | 931, 962 |
| Bst4CI | ACNGT | 2 cut(s) | 321, 431 |
| Bst6I | CTCTTC | 2 cut(s) | 528, 710 |
| BstC8I | GCNNGC | 6 cut(s) | 6, 10, 14, 226, 1031, 1035 |
| BstDEI | CTNAG | 4 cut(s) | 51, 275, 414, 757 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 351 |
| BstF5I | GGATG | 3 cut(s) | 201, 302, 903 |
| BstFNI | CGCG | 1 cut(s) | 375 |
| BstKTI | GATC | 4 cut(s) | 379, 544, 647, 868 |
| BstMAI | GTCTC | 3 cut(s) | 520, 852, 916 |
| BstMBI | GATC | 4 cut(s) | 376, 541, 644, 865 |
| BstMCI | CGRYCG | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 570 |
| BstNI | CCWGG | 2 cut(s) | 931, 962 |
| BstNSI | RCATGY | 3 cut(s) | 228, 441, 1037 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 672 |
| BstSCI | CCNGG | 2 cut(s) | 929, 960 |
| BstUI | CGCG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 2 cut(s) | 474, 535 |
| BstV2I | GAAGAC | 2 cut(s) | 179, 305 |
| Bsu36I | CCTNAGG | 1 cut(s) | 414 |
| BsuRI | GGCC | 5 cut(s) | 401, 412, 789, 934, 1006 |
| BtgZI | GCGATG | 1 cut(s) | 752 |
| BtsCI | GGATG | 3 cut(s) | 201, 302, 903 |
| BtsI | GCAGTG | 1 cut(s) | 688 |
| BtsIMutI | CAGTG | 2 cut(s) | 688, 912 |
| BtuMI | TCGCGA | 1 cut(s) | 375 |
| BveI | ACCTGC | 2 cut(s) | 372, 661 |
| Cac8I | GCNNGC | 6 cut(s) | 6, 10, 14, 226, 1031, 1035 |
| CaiI | CAGNNNCTG | 1 cut(s) | 653 |
| Cfr13I | GGNCC | 3 cut(s) | 446, 650, 933 |
| CseI | GACGC | 1 cut(s) | 890 |
| Csp6I | GTAC | 1 cut(s) | 91 |
| CviAII | CATG | 4 cut(s) | 225, 438, 574, 1034 |
| CviQI | GTAC | 1 cut(s) | 91 |
| DdeI | CTNAG | 4 cut(s) | 51, 275, 414, 757 |
| DpnI | GATC | 4 cut(s) | 378, 543, 646, 867 |
| DpnII | GATC | 4 cut(s) | 376, 541, 644, 865 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 962 |
| DriI | GACNNNNNGTC | 1 cut(s) | 512 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 962 |
| EaeI | YGGCCR | 2 cut(s) | 399, 1004 |
| Eam1104I | CTCTTC | 2 cut(s) | 528, 710 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 512 |
| EarI | CTCTTC | 2 cut(s) | 528, 710 |
| Eco147I | AGGCCT | 1 cut(s) | 412 |
| Eco24I | GRGCYC | 1 cut(s) | 581 |
| Eco31I | GGTCTC | 2 cut(s) | 852, 916 |
| Eco47I | GGWCC | 2 cut(s) | 446, 650 |
| Eco81I | CCTNAGG | 1 cut(s) | 414 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 2 cut(s) | 446, 650 |
| EcoRII | CCWGG | 2 cut(s) | 929, 960 |
| EcoT22I | ATGCAT | 2 cut(s) | 226, 1039 |
| EcoT38I | GRGCYC | 1 cut(s) | 581 |
| FaeI | CATG | 4 cut(s) | 228, 441, 577, 1037 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 1013 |
| FatI | CATG | 4 cut(s) | 224, 437, 573, 1033 |
| FauI | CCCGC | 1 cut(s) | 76 |
| FbaI | TGATCA | 1 cut(s) | 541 |
| Fnu4HI | GCNGC | 3 cut(s) | 402, 488, 549 |
| FokI | GGATG | 3 cut(s) | 188, 309, 910 |
| FriOI | GRGCYC | 1 cut(s) | 581 |
| Fsp4HI | GCNGC | 3 cut(s) | 402, 488, 549 |
| FspBI | CTAG | 1 cut(s) | 702 |
| GluI | GCNGC | 3 cut(s) | 402, 488, 549 |
| HaeIII | GGCC | 5 cut(s) | 401, 412, 789, 934, 1006 |
| HgaI | GACGC | 1 cut(s) | 890 |
| Hin1II | CATG | 4 cut(s) | 228, 441, 577, 1037 |
| HinfI | GANTC | 3 cut(s) | 150, 238, 753 |
| HphI | GGTGA | 1 cut(s) | 698 |
| Hpy188I | TCNGA | 5 cut(s) | 27, 54, 276, 678, 760 |
| Hpy188III | TCNNGA | 6 cut(s) | 124, 374, 464, 615, 648, 851 |
| HpyAV | CCTTC | 1 cut(s) | 612 |
| HpyCH4III | ACNGT | 2 cut(s) | 321, 431 |
| HpyCH4V | TGCA | 8 cut(s) | 156, 161, 224, 266, 327, 437, 1033, 1037 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 570 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 275, 414, 757 |
| Hsp92II | CATG | 4 cut(s) | 228, 441, 577, 1037 |
| Ksp22I | TGATCA | 1 cut(s) | 541 |
| Kzo9I | GATC | 4 cut(s) | 376, 541, 644, 865 |
| LmnI | GCTCC | 3 cut(s) | 72, 595, 724 |
| Lsp1109I | GCAGC | 2 cut(s) | 474, 535 |
| LweI | GCATC | 3 cut(s) | 609, 888, 953 |
| MaeI | CTAG | 1 cut(s) | 702 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MalI | GATC | 4 cut(s) | 378, 543, 646, 867 |
| MboI | GATC | 4 cut(s) | 376, 541, 644, 865 |
| MboII | GAAGA | 9 cut(s) | 73, 76, 179, 305, 362, 536, 545, 727, 1010 |
| MfeI | CAATTG | 1 cut(s) | 165 |
| MhlI | GDGCHC | 1 cut(s) | 581 |
| MlsI | TGGCCA | 1 cut(s) | 1006 |
| MluCI | AATT | 5 cut(s) | 17, 165, 610, 636, 772 |
| MluNI | TGGCCA | 1 cut(s) | 1006 |
| MlyI | GAGTC | 2 cut(s) | 144, 232 |
| MmeI | TCCRAC | 2 cut(s) | 480, 702 |
| Mox20I | TGGCCA | 1 cut(s) | 1006 |
| Mph1103I | ATGCAT | 2 cut(s) | 226, 1039 |
| MscI | TGGCCA | 1 cut(s) | 1006 |
| MseI | TTAA | 7 cut(s) | 96, 282, 386, 635, 639, 710, 812 |
| MslI | CAYNNNNRTG | 1 cut(s) | 432 |
| Msp20I | TGGCCA | 1 cut(s) | 1006 |
| MspR9I | CCNGG | 2 cut(s) | 931, 962 |
| MunI | CAATTG | 1 cut(s) | 165 |
| Mva1269I | GAATGC | 1 cut(s) | 564 |
| MvaI | CCWGG | 2 cut(s) | 931, 962 |
| MvnI | CGCG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 570 |
| NdeII | GATC | 4 cut(s) | 376, 541, 644, 865 |
| NlaIII | CATG | 4 cut(s) | 228, 441, 577, 1037 |
| NlaIV | GGNNCC | 2 cut(s) | 74, 447 |
| NruI | TCGCGA | 1 cut(s) | 375 |
| NsiI | ATGCAT | 2 cut(s) | 226, 1039 |
| NspI | RCATGY | 3 cut(s) | 228, 441, 1037 |
| OliI | CACNNNNGTG | 1 cut(s) | 432 |
| PacI | TTAATTAA | 1 cut(s) | 639 |
| PaeI | GCATGC | 2 cut(s) | 228, 1037 |
| PceI | AGGCCT | 1 cut(s) | 412 |
| PctI | GAATGC | 1 cut(s) | 564 |
| PfeI | GAWTC | 1 cut(s) | 753 |
| PkrI | GCNGC | 3 cut(s) | 403, 489, 550 |
| Ple19I | CGATCG | 1 cut(s) | 379 |
| PleI | GAGTC | 2 cut(s) | 144, 232 |
| PpsI | GAGTC | 2 cut(s) | 144, 232 |
| PpuMI | RGGWCCY | 2 cut(s) | 446, 650 |
| PshAI | GACNNNNGTC | 1 cut(s) | 672 |
| PshBI | ATTAAT | 1 cut(s) | 812 |
| Psp5II | RGGWCCY | 2 cut(s) | 446, 650 |
| Psp6I | CCWGG | 2 cut(s) | 929, 960 |
| PspGI | CCWGG | 2 cut(s) | 929, 960 |
| PspN4I | GGNNCC | 2 cut(s) | 74, 447 |
| PspPI | GGNCC | 3 cut(s) | 446, 650, 933 |
| PspPPI | RGGWCCY | 2 cut(s) | 446, 650 |
| PstNI | CAGNNNCTG | 1 cut(s) | 653 |
| PvuI | CGATCG | 1 cut(s) | 379 |
| RgaI | GCGATCGC | 1 cut(s) | 379 |
| RruI | TCGCGA | 1 cut(s) | 375 |
| RsaI | GTAC | 1 cut(s) | 92 |
| RsaNI | GTAC | 1 cut(s) | 91 |
| RseI | CAYNNNNRTG | 1 cut(s) | 432 |
| SaqAI | TTAA | 7 cut(s) | 96, 282, 386, 635, 639, 710, 812 |
| SatI | GCNGC | 3 cut(s) | 402, 488, 549 |
| Sau3AI | GATC | 4 cut(s) | 376, 541, 644, 865 |
| Sau96I | GGNCC | 3 cut(s) | 446, 650, 933 |
| ScaI | AGTACT | 1 cut(s) | 92 |
| SchI | GAGTC | 2 cut(s) | 144, 232 |
| ScrFI | CCNGG | 2 cut(s) | 931, 962 |
| SduI | GDGCHC | 1 cut(s) | 581 |
| SfaAI | GCGATCGC | 1 cut(s) | 379 |
| SfaNI | GCATC | 3 cut(s) | 609, 888, 953 |
| SgfI | GCGATCGC | 1 cut(s) | 379 |
| SinI | GGWCC | 2 cut(s) | 446, 650 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 432 |
| SmlI | CTYRAG | 1 cut(s) | 791 |
| SmoI | CTYRAG | 1 cut(s) | 791 |
| SpeI | ACTAGT | 1 cut(s) | 701 |
| SphI | GCATGC | 2 cut(s) | 228, 1037 |
| Sse9I | AATT | 5 cut(s) | 17, 165, 610, 636, 772 |
| SseBI | AGGCCT | 1 cut(s) | 412 |
| SsiI | CCGC | 2 cut(s) | 83, 402 |
| SspMI | CTAG | 1 cut(s) | 702 |
| StuI | AGGCCT | 1 cut(s) | 412 |
| StyD4I | CCNGG | 2 cut(s) | 929, 960 |
| TaaI | ACNGT | 2 cut(s) | 321, 431 |
| TaqI | TCGA | 2 cut(s) | 349, 522 |
| TasI | AATT | 5 cut(s) | 17, 165, 610, 636, 772 |
| TatI | WGTACW | 1 cut(s) | 90 |
| TauI | GCSGC | 1 cut(s) | 404 |
| TfiI | GAWTC | 1 cut(s) | 753 |
| Tru1I | TTAA | 7 cut(s) | 96, 282, 386, 635, 639, 710, 812 |
| Tru9I | TTAA | 7 cut(s) | 96, 282, 386, 635, 639, 710, 812 |
| TscAI | CASTG | 2 cut(s) | 688, 912 |
| TseI | GCWGC | 2 cut(s) | 487, 548 |
| TspDTI | ATGAA | 2 cut(s) | 179, 190 |
| TspGWI | ACGGA | 1 cut(s) | 194 |
| TspRI | CASTG | 2 cut(s) | 688, 912 |
| VpaK11BI | GGWCC | 2 cut(s) | 446, 650 |
| VspI | ATTAAT | 1 cut(s) | 812 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 351 |
| XapI | RAATTY | 1 cut(s) | 610 |
| XceI | RCATGY | 3 cut(s) | 228, 441, 1037 |
| XspI | CTAG | 1 cut(s) | 702 |
| ZrmI | AGTACT | 1 cut(s) | 92 |
| Zsp2I | ATGCAT | 2 cut(s) | 226, 1039 |