FvH4_1g17480

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017223
Physical Location & Seq
Reverse (-)
10135316 .. 10137082
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g17480.t2

Sequence Viewer

Length: 345 bp
ATGCACCGCCATGTACAGAGTGACTATGGTCCTGCAATACTAACCAGAAAGGGGGCTTTTATCGTGTTTGTTGTAGCAGAGGCAATGACCCTGATTTTGTCGATTTTTTCTTGCTTTCTTGCCTTTCTTTGCTGGAGGAACGTAAAGAGGAATGGAGCTTTGAGAAAGGCACAGAAGCTGGCTATGTTGTATTACTCAGTTACCGTGTTGGTCCTGATTGGAATGCATCTTGTCTACATCTCAAGCAACTATGTGTTACACGGTATGAAACTTCTTACAATGTTTCAAATGTTTCAAATGGTAGCATTTTGGTGTTTCTGGTGCTTTGCTATCACGTTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

115

Amino Acids

13.2

Weight (kDa)

9.75

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 17 - 124 1.2e-07 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17480 FvH4_1g17480 FvH4_1g17480
rosa_chinensis RchiOBHm_Chr2g0107701
rosa_laevigata RLG00000017598
rosa_roxburghii Rroxscaffold_2G00136020
rosa_rugosa Rorug02G0146900 Rorug02G0147000
rosa_samantha Rh2AG196500 Rh2BG209200 Rh2CG201400 Rh2DG204400
rosa_wichuraiana Rw2G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AciI CCGC 1 cut(s) 7
AfaI GTAC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 287, 296
AluBI AGCT 2 cut(s) 158, 178
AluI AGCT 2 cut(s) 158, 178
AlwNI CAGNNNCTG 1 cut(s) 178
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
AspS9I GGNCC 2 cut(s) 29, 211
AvaII GGWCC 2 cut(s) 29, 211
Bme18I GGWCC 2 cut(s) 29, 211
BmgT120I GGNCC 2 cut(s) 29, 211
BmsI GCATC 1 cut(s) 235
BoxI GACNNNNGTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 51
BsmI GAATGC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 13
BspACI CCGC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 205, 263
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 196
BstPAI GACNNNNGTC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 29, 211
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 11, 342
CviJI RGCY 4 cut(s) 56, 158, 178, 182
CviKI_1 RGCY 4 cut(s) 56, 158, 178, 182
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 29, 211
EcoT22I ATGCAT 1 cut(s) 228
FaeI CATG 2 cut(s) 14, 345
FaiI YATR 6 cut(s) 12, 27, 185, 252, 266, 343
FatI CATG 2 cut(s) 10, 341
FblI GTMKAC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 154
Hin1II CATG 2 cut(s) 14, 345
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
Hpy166II GTNNAC 2 cut(s) 235, 339
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 235, 339
HpyCH4III ACNGT 2 cut(s) 205, 263
HpyCH4IV ACGT 2 cut(s) 141, 335
HpyCH4V TGCA 3 cut(s) 4, 35, 226
HpyF3I CTNAG 1 cut(s) 196
HpySE526I ACGT 2 cut(s) 141, 335
Hsp92II CATG 2 cut(s) 14, 345
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 7 cut(s) 45, 58, 104, 118, 164, 227, 304
LweI GCATC 1 cut(s) 235
MaeII ACGT 2 cut(s) 141, 335
MaeIII GTNAC 3 cut(s) 20, 199, 255
MnlI CCTC 3 cut(s) 73, 129, 141
Mph1103I ATGCAT 1 cut(s) 228
MslI CAYNNNNRTG 2 cut(s) 9, 310
Mva1269I GAATGC 1 cut(s) 228
NlaIII CATG 2 cut(s) 14, 345
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 228
PctI GAATGC 1 cut(s) 228
PshAI GACNNNNGTC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 29, 211
PstNI CAGNNNCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 9, 310
Sau96I GGNCC 2 cut(s) 29, 211
SetI ASST 4 cut(s) 144, 160, 180, 338
SfaNI GCATC 1 cut(s) 235
SinI GGWCC 2 cut(s) 29, 211
SmiMI CAYNNNNRTG 2 cut(s) 9, 310
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
SsiI CCGC 1 cut(s) 7
TaaI ACNGT 2 cut(s) 205, 263
TaiI ACGT 2 cut(s) 144, 338
TaqI TCGA 1 cut(s) 101
TatI WGTACW 1 cut(s) 13
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 29, 211
XmiI GTMKAC 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.