RLG00000017598

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017223
Physical Location & Seq
Forward (+)
18902284 .. 18903408
1125 bp
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UTR
Exon/CDS
Intron
RLM00000017598

Sequence Viewer

Length: 453 bp
ATGGAGTCTGCTGCAAAAAAAGGCAATGAAGATAAGGAGATGGCAACAAAGACTTATGCTACCTTTTTCATAGTGGCTGCGCTTCTAGCTACCACAACCTTGTATGCAGGTTTCACCATGCTCCGCCATGTACAGAGTGACTATGGTCCTGCAATTCTAACAAGAAAGGCGGCTTTCATCACGTTTGTTGTAGCATATGCAATAACCCTGATTTCGTCGATTTTTTCTTCCTTCATTGCCTTTCTTTGCTGGATGAATCTAAAAAGGAATGGAGCTTTGAAAAAGTCACAGAAGATGGCTATGTTGTATTACTCGGCTACCAAGTTGGCCCTGACTGCAATGCTTCTTGTCCACATTTCCAGCACCTATGTGTTGTACGGTATCAAACTTCTAGGAGTGGTCGAAATGGTAGCATTTTACTTTTTCTGTTGCTTTGCTATCACGTTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

151

Amino Acids

16.68

Weight (kDa)

9.49

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 16 - 124 1.2e-08 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17480 FvH4_1g17480 FvH4_1g17480
rosa_chinensis RchiOBHm_Chr2g0107701
rosa_laevigata RLG00000017598
rosa_roxburghii Rroxscaffold_2G00136020
rosa_rugosa Rorug02G0146900 Rorug02G0147000
rosa_samantha Rh2AG196500 Rh2BG209200 Rh2CG201400 Rh2DG204400
rosa_wichuraiana Rw2G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AciI CCGC 2 cut(s) 124, 170
AfaI GTAC 2 cut(s) 132, 377
AgsI TTSAA 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 2 cut(s) 89, 275
AluI AGCT 2 cut(s) 89, 275
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 2 cut(s) 11, 77
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 146, 328
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 34, 289
BfaI CTAG 2 cut(s) 86, 392
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 3 cut(s) 12, 78, 171
BlsI GCNGC 3 cut(s) 13, 79, 172
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 146, 328
BoxI GACNNNNGTC 1 cut(s) 144
Bse3DI GCAATG 3 cut(s) 31, 234, 345
BseGI GGATG 1 cut(s) 258
BseMI GCAATG 3 cut(s) 31, 234, 345
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 329
BsnI GGCC 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 130
BspACI CCGC 2 cut(s) 124, 170
BspANI GGCC 1 cut(s) 329
BspMI ACCTGC 1 cut(s) 98
BsrDI GCAATG 3 cut(s) 31, 234, 345
BsrGI TGTACA 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 130
BstF5I GGATG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 86, 335
BstPAI GACNNNNGTC 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 98
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 146, 328
Csp6I GTAC 2 cut(s) 131, 376
CviAII CATG 3 cut(s) 118, 128, 450
CviJI RGCY 7 cut(s) 77, 89, 173, 275, 299, 317, 329
CviKI_1 RGCY 7 cut(s) 77, 89, 173, 275, 299, 317, 329
CviQI GTAC 2 cut(s) 131, 376
EciI GGCGGA 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 146
FaeI CATG 3 cut(s) 121, 131, 453
FatI CATG 3 cut(s) 117, 127, 449
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 12, 78, 171
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 12, 78, 171
FspBI CTAG 2 cut(s) 86, 392
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 12, 78, 171
HaeIII GGCC 1 cut(s) 329
HhaI GCGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 121, 131, 453
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 2 cut(s) 5, 256
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 352, 447
Hpy8I GTNNAC 2 cut(s) 352, 447
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 2 cut(s) 182, 443
HpyCH4V TGCA 5 cut(s) 14, 107, 152, 200, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 335
HpySE526I ACGT 2 cut(s) 182, 443
Hsp92II CATG 3 cut(s) 121, 131, 453
HspAI GCGC 1 cut(s) 80
LmnI GCTCC 2 cut(s) 126, 272
LpnPI CCDG 6 cut(s) 93, 162, 221, 235, 344, 373
Lsp1109I GCAGC 1 cut(s) 64
MaeI CTAG 2 cut(s) 86, 392
MaeII ACGT 2 cut(s) 182, 443
MaeIII GTNAC 2 cut(s) 137, 285
MboII GAAGA 3 cut(s) 41, 219, 304
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 86, 335
NdeI CATATG 1 cut(s) 196
NlaIII CATG 3 cut(s) 121, 131, 453
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 137, 285
OliI CACNNNNGTG 1 cut(s) 368
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 3 cut(s) 13, 79, 172
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 146, 328
RsaI GTAC 2 cut(s) 132, 377
RsaNI GTAC 2 cut(s) 131, 376
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 3 cut(s) 12, 78, 171
Sau96I GGNCC 2 cut(s) 146, 328
SchI GAGTC 1 cut(s) 14
SetI ASST 8 cut(s) 65, 91, 101, 112, 185, 277, 368, 446
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 1 cut(s) 153
SsiI CCGC 2 cut(s) 124, 170
SspMI CTAG 2 cut(s) 86, 392
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 2 cut(s) 185, 446
TaqI TCGA 2 cut(s) 218, 402
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 130
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 256
TseFI GTSAC 2 cut(s) 137, 285
TseI GCWGC 2 cut(s) 11, 77
Tsp45I GTSAC 2 cut(s) 137, 285
TspDTI ATGAA 5 cut(s) 42, 58, 166, 223, 269
VpaK11BI GGWCC 1 cut(s) 146
XspI CTAG 2 cut(s) 86, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.