Rh2BG209200

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017223
Physical Location & Seq
Reverse (-)
19579659 .. 19594294
14636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG209200.1

Sequence Viewer

Length: 687 bp
ATGGAGTCTGCTGCAAAAAAAGGCAATGAAGATAAGGAGATGGCAACAAAGACTTATGCTACCTTTTTCATAGTGGCTGCGCTTCTAGCTACCACAACCTTGTATGCAGGTTTCGCCATGCTTCGCCATGTACAGAGTGACTATGGTCCTGCAATTCTAACAAGAAAGGCGGCTTTCATCACGTTTGTTGTAGCATATGCAATAACCCTGCTTTCGTCGATTTTTTCATCCTTCGTTGCCTTTCTTTGCTGGATGAACCTAAAGAGGAATGGAGCTTTGAAAAAGTCACAGAAGATGGCTATGTTGTATTACTCGGCTACCAAGTTGGCCCTGATTGCAATGCTTCTTGTCCACATTTCCAGCACCTATGTATTGTACGGTATCAAACTTCTAGGAGTGGTGGAAATGTACAAGGAAATTTCTGGAATGCGCCCTGCGGACGGTTTGCCTCTTAACACCGTTAACGGCAGGGGCTATTTGCTTTGGACCAGAACTGGAGCTTATCATGCAGCTAGGAATGGAACTGGGCATCCCTATCTTTTTGATTTACAAAGCTTCTACATCATTGTATATTTGGAAATTTGCACATTCAAAGATCTGGAATTGCAAGCAGCCCCATTGCCTCCTCAATATCAATCCATGTCTCTAGCAGCCACAGCCACAGCTCAGATGAACCAAAGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

228

Amino Acids

25.28

Weight (kDa)

9.48

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 16 - 124 1.2e-07 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017223)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g17480 FvH4_1g17480 FvH4_1g17480
rosa_chinensis RchiOBHm_Chr2g0107701
rosa_laevigata RLG00000017598
rosa_roxburghii Rroxscaffold_2G00136020
rosa_rugosa Rorug02G0146900 Rorug02G0147000
rosa_samantha Rh2AG196500 Rh2BG209200 Rh2CG201400 Rh2DG204400
rosa_wichuraiana Rw2G015530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 98, 672
AciI CCGC 2 cut(s) 170, 437
AcsI RAATTY 2 cut(s) 417, 579
AfaI GTAC 3 cut(s) 132, 377, 410
AfiI CCNNNNNNNGG 1 cut(s) 440
AgsI TTSAA 2 cut(s) 280, 592
AloI GAACNNNNNNTCC 2 cut(s) 514, 546
AluBI AGCT 6 cut(s) 89, 275, 500, 512, 555, 665
AluI AGCT 6 cut(s) 89, 275, 500, 512, 555, 665
Alw26I GTCTC 1 cut(s) 648
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 5 cut(s) 11, 77, 509, 611, 650
ApoI RAATTY 2 cut(s) 417, 579
AspLEI GCGC 2 cut(s) 82, 432
AspS9I GGNCC 3 cut(s) 146, 328, 486
AvaII GGWCC 2 cut(s) 146, 486
BbvI GCAGC 4 cut(s) 64, 521, 623, 662
BccI CCATC 2 cut(s) 34, 289
BceAI ACGGC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 4 cut(s) 86, 392, 513, 647
BfuAI ACCTGC 2 cut(s) 98, 672
BglII AGATCT 1 cut(s) 595
BisI GCNGC 6 cut(s) 12, 78, 171, 510, 612, 651
BlsI GCNGC 6 cut(s) 13, 79, 172, 511, 613, 652
Bme18I GGWCC 2 cut(s) 146, 486
BmgT120I GGNCC 3 cut(s) 146, 328, 486
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 534
BoxI GACNNNNGTC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 516
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 499, 529
Bse3DI GCAATG 3 cut(s) 31, 345, 617
BseGI GGATG 3 cut(s) 227, 258, 529
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 3 cut(s) 31, 345, 617
BseMII CTCAG 1 cut(s) 680
BseNI ACTGG 2 cut(s) 499, 529
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 4 cut(s) 64, 521, 623, 662
BshFI GGCC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 648
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 1 cut(s) 329
Bsp1407I TGTACA 2 cut(s) 130, 408
Bsp143I GATC 1 cut(s) 595
BspACI CCGC 2 cut(s) 170, 437
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 679
BspMI ACCTGC 2 cut(s) 98, 672
BsrDI GCAATG 3 cut(s) 31, 345, 617
BsrGI TGTACA 2 cut(s) 130, 408
BsrI ACTGG 2 cut(s) 499, 529
BssMI GATC 1 cut(s) 595
Bst4CI ACNGT 3 cut(s) 380, 443, 460
BstAUI TGTACA 2 cut(s) 130, 408
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 227, 258, 529
BstHHI GCGC 2 cut(s) 82, 432
BstKTI GATC 1 cut(s) 598
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 1 cut(s) 595
BstMWI GCNNNNNNNGC 5 cut(s) 86, 113, 335, 506, 656
BstPAI GACNNNNGTC 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 64, 521, 623, 662
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 3 cut(s) 227, 258, 529
BveI ACCTGC 2 cut(s) 98, 672
Cac8I GCNNGC 1 cut(s) 609
CfoI GCGC 2 cut(s) 82, 432
Cfr13I GGNCC 3 cut(s) 146, 328, 486
Csp6I GTAC 3 cut(s) 131, 376, 409
CviAII CATG 4 cut(s) 118, 128, 506, 640
CviQI GTAC 3 cut(s) 131, 376, 409
DdeI CTNAG 1 cut(s) 666
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 146, 486
FaeI CATG 4 cut(s) 121, 131, 509, 643
FatI CATG 4 cut(s) 117, 127, 505, 639
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 6 cut(s) 12, 78, 171, 510, 612, 651
FokI GGATG 3 cut(s) 214, 265, 516
Fsp4HI GCNGC 6 cut(s) 12, 78, 171, 510, 612, 651
FspBI CTAG 4 cut(s) 86, 392, 513, 647
GlaI GCGC 2 cut(s) 81, 431
GluI GCNGC 6 cut(s) 12, 78, 171, 510, 612, 651
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 329
HhaI GCGC 2 cut(s) 82, 432
Hin1II CATG 4 cut(s) 121, 131, 509, 643
Hin6I GCGC 2 cut(s) 80, 430
HinP1I GCGC 2 cut(s) 80, 430
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 1 cut(s) 5
HpaI GTTAAC 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 352, 463
Hpy188I TCNGA 1 cut(s) 669
Hpy188III TCNNGA 2 cut(s) 423, 599
Hpy8I GTNNAC 2 cut(s) 352, 463
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 3 cut(s) 380, 443, 460
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 8 cut(s) 14, 107, 152, 200, 338, 509, 585, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 113, 335, 506, 656
HpyF3I CTNAG 1 cut(s) 666
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 4 cut(s) 121, 131, 509, 643
HspAI GCGC 2 cut(s) 80, 430
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 1 cut(s) 595
LmnI GCTCC 2 cut(s) 272, 497
Lsp1109I GCAGC 4 cut(s) 64, 521, 623, 662
LweI GCATC 1 cut(s) 538
MaeI CTAG 4 cut(s) 86, 392, 513, 647
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 137, 285
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 2 cut(s) 41, 304
MflI RGATCY 1 cut(s) 595
MluCI AATT 4 cut(s) 153, 417, 579, 602
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 4 cut(s) 258, 459, 633, 636
MseI TTAA 2 cut(s) 453, 462
Mva1269I GAATGC 1 cut(s) 432
MwoI GCNNNNNNNGC 5 cut(s) 86, 113, 335, 506, 656
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 595
NlaIII CATG 4 cut(s) 121, 131, 509, 643
NmeAIII GCCGAG 1 cut(s) 293
NmuCI GTSAC 2 cut(s) 137, 285
PctI GAATGC 1 cut(s) 432
PkrI GCNGC 6 cut(s) 13, 79, 172, 511, 613, 652
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshAI GACNNNNGTC 1 cut(s) 144
PspPI GGNCC 3 cut(s) 146, 328, 486
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 3 cut(s) 132, 377, 410
RsaNI GTAC 3 cut(s) 131, 376, 409
SaqAI TTAA 2 cut(s) 453, 462
SatI GCNGC 6 cut(s) 12, 78, 171, 510, 612, 651
Sau3AI GATC 1 cut(s) 595
Sau96I GGNCC 3 cut(s) 146, 328, 486
SchI GAGTC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 538
SinI GGWCC 2 cut(s) 146, 486
Sse9I AATT 4 cut(s) 153, 417, 579, 602
SsiI CCGC 2 cut(s) 170, 437
SspMI CTAG 4 cut(s) 86, 392, 513, 647
TaaI ACNGT 3 cut(s) 380, 443, 460
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 218
TasI AATT 4 cut(s) 153, 417, 579, 602
TatI WGTACW 2 cut(s) 130, 408
TauI GCSGC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 453, 462
Tru9I TTAA 2 cut(s) 453, 462
TseFI GTSAC 2 cut(s) 137, 285
TseI GCWGC 5 cut(s) 11, 77, 509, 611, 650
Tsp45I GTSAC 2 cut(s) 137, 285
TspDTI ATGAA 6 cut(s) 42, 58, 166, 216, 269, 686
VpaK11BI GGWCC 2 cut(s) 146, 486
XapI RAATTY 2 cut(s) 417, 579
XspI CTAG 4 cut(s) 86, 392, 513, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.